/*----------------------------------------------------------------
%W% %G%
960210b.out translated Wed Sep 30 17:40:16 1998 by ntscable 2.0
source file syntax: Nevin
output file syntax: CABLE
soma: diameter = 5.00831 um length = 54.1586 um area = 852.134 um2
10 three-D points numbered 1-11
5 primary neurites
21 branches totaling 2045.53 um in length, 10302.6 um2 in area
929 tree points translated to 38 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 2045.53 um.
/*
DIG version 5.19 3-28-89 Rocky Nevin
Comments: Neuron
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[1],\
dend2[1],\
dend3[23],\
dend4[1],\
dend5[11]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
soma connect dend5[0] (0), 0.5
/* neurite geometry*/
for i = 0,0 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,22 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,10 {
dend5[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,0 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,22 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,0 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
for i = 1,10 {
dend5[fscan()] connect dend5[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
10
1.94 0.51 0 10.66
-0.02 0.16 -1.64 11.72
-1.75 0.87 -1.64 11.01
-3.71 1.75 -1.64 9.95
6.72 2.64 -4.29 4.62
-3.06 5.48 -0.67 2.49
-9.79 3.53 -0.3 4.62
-4.36 -3.22 -2.1 2.49
1.07 -5.71 3.89 2.49
1.07 -5.71 2.26 2.49
NEURITE COORDINATES AND DIAMETERS:
1 9
1.72 -7.48 2.78 2.13
1.07 -9.44 6.78 2.13
0.55 -12 6.16 1.78
0.11 -13.07 7.57 1.42
-0.75 -15.02 7.57 1.42
-0.54 -16.44 7.57 1.42
-0.75 -18.93 7.57 1.42
-1.19 -21.59 8.07 1.42
-2.71 -22.48 8.07 1.42
1 9
-4.89 -4.13 -0.3 1.78
-4.45 -5.2 -0.3 1.42
-4.23 -6.62 -1.49 1.42
-3.15 -7.51 -1.49 1.42
-3.15 -9.11 -5.27 1.42
-4.67 -10.53 -4.06 1.42
-5.54 -11.95 -4.06 1.42
-4.23 -12.48 -4.06 1.42
-4.45 -15.15 -5.23 1.42
1 4
-9.83 3.58 -0.3 4.62
-12.44 3.93 -0.3 4.26
-14.39 4.11 -0.3 3.55
-17.44 4.27 0.47 3.55
1 34
-17.44 4.27 0.47 3.55
-19.39 4.09 1.74 2.13
-21.78 3.73 -1.23 1.78
-23.52 3.73 -1.23 1.78
-25.69 3.38 -1.23 1.78
-27.43 3.2 -1.23 1.78
-29.15 3.18 -0.74 2.13
-29.81 3.18 -0.74 2.13
-32.41 4.24 -2.88 1.78
-34.15 4.42 -2.88 1.78
-35.67 4.42 -2.88 1.78
-37.41 4.24 -2.88 1.78
-39.8 4.07 -2.88 1.78
-42.18 4.07 -1.97 1.78
-44.14 4.6 -1.97 1.78
-46.31 5.49 -1.97 1.78
-48.37 4.51 -4.44 1.78
-49.24 3.96 -4.44 2.13
-51.19 3.25 -4.44 2.13
-52.93 3.25 -6.02 2.13
-53.8 3.25 -6.02 2.13
-55.76 3.78 -4.33 2.13
-57.49 3.78 -5.29 2.13
-59.01 3.25 -5.29 2.13
-59.88 2.54 -6.18 2.13
-61.18 2.71 -6.18 2.13
-62.71 3.25 -6.18 1.78
-63.79 3.25 -6.18 1.78
-64.49 2.84 -6.33 1.78
-65.57 2.29 -6.33 1.78
-66.24 1.76 -7.42 2.13
-67.33 1.58 -7.42 2.13
-68.63 1.76 -7.42 2.13
-69.93 1.76 -7.42 2.13
1 22
-69.93 1.76 -7.42 2.13
-71.45 -0.2 -7.42 1.78
-71.89 -0.73 -7.42 1.78
-71.89 -1.8 -7.42 1.78
-72.32 -2.51 -7.42 1.78
-72.97 -3.04 -7.42 1.42
-74.06 -2.33 -7.42 1.42
-74.93 -2.15 -7.42 1.42
-75.8 -2.51 -7.42 1.42
-75.58 -3.22 -7.42 1.42
-75.58 -3.75 -7.42 1.42
-76.88 -5.17 -5.77 1.42
-77.32 -6.06 -5.77 1.42
-78.62 -6.42 -8.1 1.42
-79.49 -6.24 -8.1 1.42
-79.92 -6.95 -9.31 1.42
-79.71 -7.84 -9.31 1.42
-79.27 -8.72 -9.31 1.42
-79.27 -9.44 -9.31 1.42
-79.49 -9.97 -9.31 1.42
-79.71 -11.21 -9.31 1.42
-79.71 -12.46 -9.88 1.42
1 12
-79.71 -12.46 -9.88 1.42
-79.4 -13.44 -9.88 1.07
-79.18 -14.69 -9.88 1.07
-78.53 -15.22 -11.18 1.07
-77.23 -15.75 -11.18 1.07
-76.36 -16.29 -11.18 1.07
-75.06 -16.64 -14.14 1.07
-74.84 -17.17 -14.14 1.07
-74.19 -18.24 -16.02 1.07
-72.67 -18.24 -17.56 1.07
-71.36 -19.31 -19.47 1.07
-71.36 -20.02 -19.47 1.07
1 4
-79.71 -12.46 -9.88 1.42
-81.14 -12.38 -8.32 1.42
-82.66 -12.2 -8.32 1.42
-82.66 -12.2 -5.26 1.42
1 6
-82.66 -12.2 -5.26 1.42
-82.87 -11.49 -5.26 1.42
-83.96 -11.31 -5.11 1.07
-85.48 -11.31 -5.11 1.07
-86.13 -10.6 -5.11 1.07
-85.92 -9.54 -5.11 1.07
1 7
-82.66 -12.2 -5.26 1.42
-82.66 -12.91 -8.98 1.42
-83.31 -13.44 -8.98 1.42
-84.18 -13.62 -8.98 1.42
-85.26 -13.62 -9.75 1.42
-86.13 -13.98 -9.75 1.42
-86.13 -14.15 -9.75 1.42
1 5
-86.13 -14.15 -9.75 1.42
-87.44 -13.62 -9.75 1.07
-88.74 -13.44 -8.31 1.07
-90.26 -13.27 -7.22 1.42
-90.26 -13.47 -7.22 1.78
1 10
-86.13 -14.15 -9.75 1.42
-86.35 -15.6 -10.65 1.42
-86.13 -16.66 -10.65 1.42
-86.35 -17.37 -10.65 1.42
-86.78 -17.91 -10.65 1.42
-87.65 -18.62 -12.19 1.42
-89.39 -18.62 -12.19 1.42
-90.91 -19.51 -12.19 1.42
-92.43 -20.04 -12.19 1.42
-94.38 -19.51 -10.47 1.07
1 10
-69.93 1.76 -7.42 2.13
-70.93 2.7 -10.47 2.13
-72.75 2.8 -10.47 2.13
-73.84 2.42 -10.47 2.13
-76.01 3.67 -10.47 1.78
-77.33 4.38 -10.47 1.78
-78.85 5.09 -10.47 1.78
-80.16 5.26 -10.47 1.78
-81.89 5.8 -11.7 2.13
-83.2 5.98 -10.84 2.49
1 103
-83.2 5.98 -10.84 2.49
-85.37 5.62 -9.85 1.78
-87.11 5.26 -9.85 1.78
-88.63 5.8 -9.85 1.78
-90.37 5.09 -9.85 1.78
-91.89 5.8 -10.81 1.78
-92.98 5.44 -10.81 1.78
-93.85 5.07 -10.81 1.78
-94.93 4.36 -12.69 1.78
-96.24 4 -14.03 1.78
-97.32 4 -14.03 1.78
-98.62 3.65 -14.03 1.78
-99.71 3.47 -15.02 1.78
-101.01 3.29 -15.02 1.78
-103.18 3.82 -15.02 1.78
-104.49 3.65 -15.02 1.42
-105.79 3.11 -14.82 1.42
-107.55 3.2 -15.65 1.42
-108.64 3.91 -15.65 1.42
-110.16 3.38 -15.65 1.42
-111.25 3.91 -15.65 1.42
-112.55 3.71 -15.65 1.42
-113.64 3.71 -15.65 1.42
-114.94 3.53 -15.65 1.42
-116.24 3.71 -15.65 1.42
-116.89 2.82 -18.74 1.42
-117.54 2.29 -18.74 1.42
-118.41 1.93 -18.74 1.42
-119.72 2.47 -20.1 1.42
-121.02 2.64 -20.1 1.42
-122.11 1.93 -20.1 1.42
-122.76 1.4 -20.1 1.42
-123.84 1.22 -22 1.42
-124.92 1.36 -20.86 1.42
-126.44 1.89 -20.86 1.42
-127.09 1.89 -20.86 1.42
-128.83 1.53 -22.65 1.42
-129.92 1.18 -22.65 1.42
-130.78 1.36 -22.65 1.42
-131.44 1.89 -22.65 1.42
-133.17 1.71 -22.65 1.42
-135.34 1.36 -22.65 1.42
-136.21 1.18 -22.65 1.42
-136.86 0.11 -24.46 1.42
-137.52 -0.24 -24.46 1.42
-138.17 -0.24 -24.46 1.42
-139.47 0.47 -26.11 1.42
-140.56 1 -25.28 1.42
-142.08 0.64 -25.28 1.42
-143.34 -0.82 -26.65 1.42
-144.21 -1.71 -26.38 1.42
-145.73 -2.42 -26.38 1.42
-147.03 -1.91 -29.17 1.42
-148.98 -2.98 -29.48 1.42
-150.72 -2.62 -29.48 1.42
-152.24 -2.44 -32.5 1.42
-153.98 -1.73 -32.5 1.42
-155.72 -0.67 -32.5 1.42
-158.32 0.4 -30.9 1.42
-159.84 1.64 -30.9 1.42
-160.92 1.78 -30.9 1.42
-162.22 1.07 -31.78 1.42
-163.74 0.51 -31.78 1.42
-165.48 1.04 -34.07 1.42
-166.78 1.76 -34.07 1.42
-168.52 2.11 -34.07 1.42
-170.04 2.47 -31.84 1.42
-170.91 2.11 -32.27 1.42
-171.13 1.4 -32.27 1.42
-171.78 0.87 -34.05 1.42
-172.65 0.87 -35.36 1.42
-173.95 1.22 -37.37 1.42
-175.25 0.87 -36.75 1.42
-176.77 -0.02 -36.75 1.42
-177.86 -0.2 -39.3 1.42
-178.7 -0.38 -39.3 1.42
-180.01 -0.38 -39.3 1.42
-181.09 0.49 -40.08 1.42
-183.05 0.84 -40.08 1.42
-185.44 1.2 -40.08 1.42
-186.96 1.91 -41.18 1.42
-188.48 2.8 -40.78 1.42
-190.43 3.33 -40.78 1.42
-192.6 3.51 -40.78 1.42
-194.99 3.51 -40.78 1.42
-196.1 4.11 -40.3 1.42
-197.41 4.44 -40.3 1.42
-198.93 4.8 -40.3 1.42
-199.36 5.86 -40.3 1.42
-200.68 5.86 -40.3 1.42
-202.2 5.15 -40.3 1.42
-203.72 4.44 -41.76 1.42
-205.68 4.62 -41.76 1.42
-206.76 4.98 -41.76 1.42
-208.5 6.04 -41.76 1.42
-211.32 6.4 -43.34 1.42
-213.93 6.58 -43.34 1.42
-215.32 5.49 -43.34 1.42
-217.06 5.13 -43.34 1.42
-219.23 5.31 -43.34 1.42
-221.18 5.13 -43.34 1.42
-224.01 6.38 -43.34 1.42
-224.44 8.15 -43.34 1.42
1 45
-224.44 8.15 -43.34 1.42
-225.96 7.62 -47.48 1.42
-227.26 6.73 -47.48 1.42
-228.57 6.73 -49.38 1.42
-229.87 6.2 -49.38 1.42
-230.52 7.27 -49.38 1.42
-231.17 7.62 -49.38 1.42
-232.04 7.62 -48.66 1.42
-233.1 7.22 -48.82 1.42
-234.62 7.4 -48.82 1.42
-237.66 7.58 -51.62 1.42
-240.05 8.29 -51.62 1.42
-241.36 8.82 -51.62 1.42
-242.66 8.47 -53.53 1.42
-245.05 8.47 -56.86 1.42
-245.48 9.53 -56.86 1.42
-247.22 9.89 -56.86 1.42
-248.74 10.42 -59.29 1.42
-250.91 10.24 -61.06 1.42
-252.54 10.73 -61.06 1.42
-254.27 10.53 -61.06 1.42
-254.93 11.07 -61.06 1.42
-256.66 10.53 -61.06 1.42
-258.62 11.42 -61.06 1.42
-260.14 11.42 -61.06 1.42
-261.66 10.18 -63.81 1.42
-263.61 10.18 -63.81 1.42
-265.57 10.53 -63.81 1.42
-268.61 10.53 -65.86 1.42
-270.35 11.49 -65.86 1.42
-271.87 11.84 -65.86 1.42
-273.83 12.38 -65.86 1.42
-275.78 13.09 -69.8 1.42
-277.74 13.24 -66.13 1.42
-280.34 13.78 -66.13 1.42
-281.43 13.78 -66.13 1.42
-281.86 14.66 -66.13 1.42
-282.3 16.08 -68.39 1.42
-283.6 17.15 -68.39 1.42
-285.99 16.62 -67.99 1.42
-288.62 16.96 -67.99 1.42
-290.36 17.47 -69.94 1.42
-291.66 18 -69.94 1.42
-293.18 18 -69.94 1.42
-293.84 18.89 -69.94 1.42
1 23
-293.84 18.89 -69.94 1.42
-295.79 19.24 -71.93 1.42
-298.18 19.6 -75.07 1.42
-300.35 20.31 -75.07 1.42
-302.52 20.31 -75.07 1.42
-304.69 19.95 -75.07 1.42
-306.79 20.18 -75.07 1.42
-308.09 20 -77.1 1.42
-309.61 19.98 -77.1 1.07
-312.22 20.51 -77.1 1.07
-315.04 21.4 -79.28 1.07
-317.65 21.93 -79.28 1.07
-320.25 22.46 -79.34 1.07
-322.86 21.4 -80.58 1.07
-324.99 21.93 -80.58 1.07
-326.51 21.93 -80.58 1.07
-329.33 21.93 -80.58 1.07
-330.2 22.64 -80.58 1.07
-332.37 22.64 -80.78 1.07
-334.11 22.29 -80.78 1.07
-335.63 22.11 -80.78 1.07
-337.8 21.93 -80.83 1.07
-339.11 22.29 -80.94 1.07
1 17
-293.84 18.89 -69.94 1.42
-294.49 20.38 -75.18 1.42
-295.79 21.8 -75.18 1.42
-294.92 22.51 -75.18 1.42
-295.57 23.4 -75.18 1.42
-295.14 24.82 -77.14 1.42
-295.79 25.53 -78.54 1.42
-297.09 25.35 -81.06 1.42
-296.87 27.13 -86.17 1.42
-297.09 28.19 -88.68 1.42
-297.09 29.08 -89.56 1.42
-297.53 29.61 -89.56 1.42
-297.96 29.97 -91.47 1.42
-298.18 30.68 -91.54 1.42
-298.83 31.21 -91.54 1.78
-298.83 31.39 -91.54 1.78
-299.26 32.28 -91.54 1.78
1 10
-299.26 32.28 -91.54 1.78
-300.57 32.1 -91.79 1.42
-301.87 31.92 -93.3 1.42
-303.17 31.92 -102.08 1.42
-304.04 33.35 -99.24 1.42
-305.34 35.18 -99.52 1.42
-305.34 36.42 -99.52 1.42
-307.07 38.37 -99.52 1.42
-307.07 39.06 -93.28 1.42
-308.1 39.2 -101.21 1.42
1 7
-299.26 32.28 -91.54 1.78
-299.63 34.05 -93.46 1.42
-299.2 34.94 -93.46 1.42
-299.2 36.36 -93.46 1.42
-299.2 37.78 -93.46 1.42
-299.42 39.02 -93.46 1.42
-300.28 39.56 -91.38 1.42
1 25
-224.44 8.15 -43.34 1.42
-224.23 9.24 -45.18 1.42
-224.67 10.66 -45.18 1.42
-225.54 12.26 -45.18 1.42
-226.84 13.15 -42.02 1.42
-228.79 14.57 -39.76 1.42
-230.53 15.28 -39.76 1.42
-231.4 16.35 -39.76 1.42
-231.62 17.42 -38.94 1.42
-233.36 18.3 -36.33 1.42
-234.44 18.84 -36.33 1.42
-235.31 19.72 -37.85 1.42
-235.31 21.15 -33.9 1.42
-235.09 23.1 -33.9 1.42
-235.25 24.44 -31.92 1.42
-235.69 26.22 -31.92 1.42
-235.69 28.51 -29.42 1.42
-236.12 29.75 -29.42 1.42
-236.55 31.35 -27.61 1.42
-238.31 32.24 -25.37 1.42
-239.18 33.66 -28.53 1.78
-240.92 34.9 -25.72 1.78
-242.65 35.97 -25.72 1.78
-243.3 38.28 -25.72 1.78
-243.87 39.24 -25.65 1.78
1 98
-83.2 5.98 -10.84 2.49
-84.34 7.93 -13.12 2.13
-86.51 8.62 -15.09 1.78
-87.81 8.98 -15.09 1.78
-89.33 10.57 -16.91 1.78
-90.64 12.17 -16.91 1.78
-92.81 13.42 -16.91 1.78
-94.33 14.3 -16.91 1.78
-95.63 15.19 -16.91 1.78
-97.15 16.26 -16.91 1.78
-98.67 16.79 -16.91 1.78
-99.97 17.68 -16.91 1.78
-100.84 18.57 -15.91 1.78
-102.79 18.78 -15.91 1.78
-104.53 18.4 -17.23 1.78
-106.26 18.76 -17.23 1.78
-107.78 19.29 -17.23 1.78
-109.3 19.64 -19.86 1.78
-111.04 20.18 -19.86 1.78
-112.56 20.35 -21.04 1.78
-114.3 20.71 -22.82 1.78
-116.25 21.42 -22.82 1.78
-117.12 22.31 -24.66 1.78
-119.29 22.49 -24.91 1.78
-120.54 22.4 -24.91 1.78
-121.62 23.29 -26.3 1.78
-122.27 24.53 -26.3 1.78
-123.36 25.4 -26.3 1.78
-125.53 26.46 -28.35 1.78
-126.62 27.35 -28.35 1.78
-127.7 28.42 -30.09 1.78
-128.57 28.95 -30.09 1.78
-129.44 30.19 -30.09 1.78
-130.96 31.26 -30.09 1.78
-132.7 32.15 -30.09 1.78
-133.57 31.97 -32.47 1.78
-135.09 33.21 -33.04 1.78
-136.61 34.1 -33.04 1.78
-137.74 35.09 -33.04 1.78
-139.47 36.15 -33.04 1.78
-140.56 36.51 -33.04 1.78
-142.08 36.86 -34.51 1.78
-143.82 37.04 -34.51 1.78
-144.69 38.29 -35.96 1.78
-145.99 39.71 -37.26 1.78
-148.16 41.31 -38.61 1.78
-150.55 41.66 -38.61 1.78
-151.64 41.66 -39.58 1.78
-152.94 42.02 -41.26 1.78
-154.89 42.02 -42.7 1.78
-155.7 41.11 -42.7 1.78
-157.01 41.09 -43.07 1.78
-158.53 41.44 -44.3 1.78
-160.7 43.04 -44.3 1.78
-162 43.58 -45.28 1.78
-163.52 44.11 -45.28 1.78
-165.26 45.35 -45.28 1.78
-166.13 45.89 -44.91 1.78
-167.86 47.31 -44.91 1.42
-169.38 48.37 -44.91 1.42
-170.47 49.44 -47.21 1.42
-171.56 50.86 -49.46 1.78
-172.64 51.39 -49.46 1.78
-174.57 53.35 -49.46 1.78
-175.66 54.04 -49.46 1.78
-176.74 54.93 -49.46 1.78
-177.83 54.93 -49.46 1.78
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1 11
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1 12
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1 59
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1 15
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1 24
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1 5
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1 6
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1 165
29.76 8.09 -19.73 2.13
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1 15
262.87 133.02 -140.18 1.78
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1 13
262.87 133.02 -140.18 1.78
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1 4
253.25 144.02 -148.51 1.42
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1 5
253.25 144.02 -148.51 1.42
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249.55 142.58 -150.89 1.42
247.16 141.69 -150.89 1.42
245.21 141.34 -149.7 1.07
CONNECTIONS:
0 1
1 1
2 1
2 1
4 1
4 1
6 1
6 1
1 1
9 1
10 1
11 1
11 1
13 1
13 1
10 1
9 1
17 1
17 1
0 1
20 1
20 1
0 1
1 1
1 1
3 1
3 1
0 1
6 1
6 1
8 1
8 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}