/*---------------------------------------------------------------- %W% %G% 960217e.out translated Wed Sep 30 17:41:02 1998 by ntscable 2.0 source file syntax: Nevin output file syntax: CABLE soma: diameter = 3.23726 um length = 56.3954 um area = 573.549 um2 7 three-D points numbered 1-7 4 primary neurites 25 branches totaling 4034.39 um in length, 14405.2 um2 in area 1223 tree points translated to 47 segments (1 requested) Neurites divided into segments of equal dx between adjacent digitized branch points. Segment length constrained to be < 4034.39 um. /* DIG version 5.19 3-28-89 Rocky Nevin Comments: Neuron ----------------------------------------------------------------*/ /* create sections */ create soma,\ dend1[15],\ dend2[9],\ dend3[15],\ dend4[7] /*----------------------------------------------------------------*/ proc geometry() { local i, j /* soma geometry */ soma { nseg = 1 pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } /* connect primary neurites */ soma connect dend1[0] (0), 0.5 soma connect dend2[0] (0), 0.5 soma connect dend3[0] (0), 0.5 soma connect dend4[0] (0), 0.5 /* neurite geometry*/ for i = 0,14 { dend1[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,8 { dend2[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,14 { dend3[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,6 { dend4[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } /* branching topology*/ for i = 1,14 { dend1[fscan()] connect dend1[i] (0), fscan() } for i = 1,8 { dend2[fscan()] connect dend2[i] (0), fscan() } for i = 1,14 { dend3[fscan()] connect dend3[i] (0), fscan() } for i = 1,6 { dend4[fscan()] connect dend4[i] (0), fscan() } } geometry() SOMA COORDINATES AND DIAMETERS: 7 0.2 -0.2 0 13.86 -0.45 1.4 0 12.44 0.62 6.02 5.06 2.49 -3.07 7.26 -10.57 2.49 -5.03 5.31 -8.55 2.13 4.74 -4.29 9.22 2.13 5.39 -5.35 3.59 2.13 NEURITE COORDINATES AND DIAMETERS: 1 2 6.05 -5.17 7.61 2.13 7.57 -6.95 11.58 2.13 1 7 7.57 -6.95 11.58 2.13 8.87 -8.55 6.39 1.78 10.39 -10.33 6.39 1.78 10.39 -13.88 10.27 1.78 10.17 -17.08 10.42 1.78 11.47 -19.31 10.66 1.78 12.34 -21.46 16.78 1.78 1 22 12.34 -21.46 16.78 1.78 12.34 -23.77 15.12 1.42 11.47 -27.33 21.5 1.42 10.6 -29.64 19.74 1.42 12.99 -30.17 19.74 1.42 12.77 -31.06 19.74 1.07 13.64 -31.59 15.4 1.07 13.78 -33.04 16.9 1.07 12.05 -34.64 16.9 1.07 13.13 -35.89 16.9 1.07 13.78 -39.44 19.61 1.07 15.3 -39.08 19.61 1.07 14.87 -41.39 19.26 1.07 15.74 -43.35 21.26 1.07 14.43 -44.95 25.89 1.07 16.39 -45.68 25.89 1.07 17.69 -47.1 25.89 1.07 19.1 -48.67 26.79 1.07 16.93 -50.26 27.74 1.07 19.54 -52.22 32.93 1.07 17.15 -53.64 34.06 1.07 16.93 -54 38.08 1.07 1 12 12.34 -21.46 16.78 1.78 13.46 -22.04 8.3 1.42 14.25 -23.42 8.3 1.42 14.45 -25.38 6.62 1.42 15.1 -28.42 6.62 1.42 15.32 -31.62 6.2 1.42 16.84 -34.28 3.64 1.42 17.49 -38.19 3.64 1.42 19.12 -41.73 1.08 1.42 19.34 -45.46 1.08 1.42 19.34 -48.66 0.29 1.42 19.12 -48.66 0.29 1.42 1 41 19.12 -48.66 0.29 1.42 18.89 -49.9 -2.91 1.07 19.1 -50.97 -2.91 1.07 20.19 -52.21 -2.91 1.07 20.19 -53.81 -2.91 1.07 19.53 -56.26 -3.17 1.07 19.1 -57.33 0.3 1.07 21.7 -60.71 0.3 1.07 23.22 -63.02 -0.34 1.07 23.87 -66.21 -0.34 1.07 23.87 -67.99 4.65 1.07 24.23 -68.93 4.65 1.07 26.17 -69.47 4.65 1.07 26.61 -74.8 4.65 1.07 26.17 -76.04 4.5 1.07 27.26 -78.02 4.5 1.42 28.34 -78.9 4.5 1.07 27.91 -82.46 7.21 1.07 30.08 -84.77 8.14 1.07 30.18 -86.38 9.78 1.07 29.75 -91.53 9.78 1.07 32.79 -94.73 5.37 1.07 35.61 -97.57 5.37 1.07 39.52 -100.23 1.93 1.07 41.09 -104.62 1.96 1.07 43.04 -105.86 -2.87 1.07 43.91 -110.33 -2.87 1.07 43.69 -112.28 -6.07 1.07 46.52 -114.41 -3.7 1.07 47.17 -115.66 -3.7 1.42 46.95 -119.31 -3.7 1.07 47.17 -120.55 -3.7 1.42 47.38 -122.71 -3.7 1.07 49.77 -125.9 -3.63 1.07 51.29 -126.61 -3.63 1.07 52.59 -128.21 -6.98 1.07 53.68 -131.41 -6.98 1.07 54 -135.2 -8 1.07 54 -138.22 -8 1.07 52.26 -139.46 -8 1.07 52.26 -139.46 -8 1.07 1 10 19.12 -48.66 0.29 1.42 20.05 -49.31 -4.89 1.42 21.57 -51.11 -4.89 1.07 21.57 -53.06 -1.14 1.07 23.09 -55.02 -1.78 1.07 24.39 -57.33 -1.78 1.07 28.74 -60.17 -2.65 1.07 30.48 -61.59 -2.65 1.42 31.13 -61.77 -2.65 1.42 32.65 -61.77 -16.43 1.42 1 4 32.65 -61.77 -16.43 1.42 34.38 -62.83 -20.75 1.07 34.38 -64.43 -20.75 1.07 36.54 -66.33 -27.11 1.07 1 17 36.54 -66.33 -27.11 1.07 36.1 -68.31 -24.33 1.07 35.23 -70.08 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115.04 -86.71 1.07 19.75 117.51 -86.71 1.07 20.4 121.77 -86.71 1.07 18.88 123.19 -88.93 1.07 17.36 125.15 -88.93 1.07 17.58 126.92 -88.93 1.07 17.78 128.75 -88.6 1.07 16.26 132.84 -88.6 1.07 15.39 135.5 -93.9 1.07 16.48 137.64 -93.9 1.07 14.53 138.88 -93.9 1.07 15.83 143.68 -93.9 1.07 15.35 144.29 -92.89 1.07 12.53 146.42 -92.89 1.07 11.22 149.26 -92.89 1.07 10.14 151.93 -92.89 1.07 10.35 155.48 -92.89 1.07 10.57 158.5 -99.29 1.07 10.57 162.31 -93.7 1.07 9.05 167.28 -93.7 1.07 9.68 168.35 -93.7 1.07 8.38 170.84 -93.7 1.07 7.94 172.61 -93.7 1.07 9.25 174.03 -93.7 1.07 8.95 175.58 -93.7 1.07 7.21 179.13 -91.07 1.07 6.13 181.97 -91.07 1.07 4.61 183.04 -91.07 1.07 5.26 187.66 -95.09 1.07 5.91 188.19 -95.09 1.07 3.14 190.15 -95.09 1.07 4.23 194.77 -95.09 1.07 4.23 195.28 -94.36 1.07 2.71 196.17 -94.36 1.07 3.14 200.26 -95.2 1.07 1.41 201.68 -95.2 1.07 0.97 204.88 -95.2 1.07 -0.55 206.58 -96.74 1.07 -0.99 211.71 -96.74 1.07 -0.12 215.08 -96.74 1.07 -0.55 217.21 -96.74 1.07 -0.99 218.99 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46.88 21.54 1.07 -27.25 48 21.54 1.07 -30.53 47.64 21.54 1.07 -33.13 50.49 26.02 1.07 -33.78 52.44 26.02 1.07 -35.3 53.51 32.26 1.07 -37.48 53.15 32.26 1.07 -39 55.82 32.72 1.07 -39.42 55.93 20.48 1.07 1 90 -6.64 31.41 1.88 1.78 -6.2 32.82 1.88 1.78 -7.5 36.37 1.88 1.78 -8.15 37.97 0.76 1.42 -7.94 40.28 -4.06 1.42 -8.37 43.3 -4.06 1.42 -7.72 45.97 -4.06 1.42 -7.38 47.78 -4.94 1.42 -8.25 49.91 -4.94 1.42 -8.03 51.66 -4.94 1.42 -8.25 53.26 -4.94 1.42 -8.03 54.5 -4.94 1.42 -7.62 56.64 -4.94 1.42 -8.49 58.95 -4.94 1.42 -10.44 62.32 -4.23 1.42 -12.81 65.75 -4.23 1.42 -12.39 67.17 -4.23 1.42 -12.39 68.6 -4.23 1.42 -10.22 69.31 -4.23 1.42 -9.78 71.62 -4.23 1.42 -9.78 74.46 -4.23 1.07 -8.91 75.7 -8.23 1.07 -9.13 77.66 -8.23 1.07 -8.35 78.82 -8.23 1.07 -7.26 80.24 -8.23 1.07 -6.63 84.15 -8.23 1.07 -6.19 85.22 -8.23 1.07 -5.33 86.46 -8.23 1.07 -4.24 86.64 -8.23 1.07 -4.46 87.53 -8.23 1.07 -4.67 87.88 -8.23 1.07 -5.54 88.59 -8.23 1.07 -6.41 89.66 -8.23 1.07 -6.41 91.61 -8.23 1.07 -6.85 93.74 -8.23 1.07 -5.95 97.15 -8.23 1.07 -5.31 99.11 -8.23 1.07 -4.88 100 -8.23 1.07 -4.88 101.59 -8.23 1.07 -4.01 103.55 -8.23 1.07 -4.45 104.61 -8.23 1.07 -4.45 104.97 -8.23 1.07 -4.01 105.32 -8.23 1.07 -5.1 106.75 -8.23 1.07 -5.97 108.52 -8.23 1.07 -5.38 110.73 -8.23 1.07 -2.99 112.13 -8.23 1.07 -3.65 114.97 -8.23 1.07 -4.3 116.75 -8.23 1.07 -3.21 117.99 -8.23 1.07 -2.78 119.06 -8.23 1.07 -3.21 119.95 -8.23 1.07 -3.86 121.72 -5.23 1.07 -3.65 124.57 -5.23 1.07 -4.27 128.13 -5.23 1.07 -4.49 128.49 -5.23 1.07 -3.62 132.93 -5.23 1.07 -3.62 133.82 -5.23 1.07 -5.79 135.95 -5.23 1.07 -6.01 137.37 -5.23 1.07 -6.44 138.79 -5.23 1.07 -7.3 139.31 -5.23 1.07 -5.57 143.57 -5.23 1.07 -6.87 145.88 -5.23 1.07 -8.61 147.3 -5.23 1.07 -8.82 149.61 -5.23 1.07 -9.47 151.39 -5.23 1.07 -10.13 152.63 -5.23 1.07 -9.26 154.23 -5.23 1.07 -9.03 157.38 -3.66 1.07 -8.82 158.97 -3.66 1.07 -9.03 160.04 -3.66 1.42 -10.34 161.99 -3.66 1.42 -11.21 163.24 -3.66 1.42 -9.25 167.15 -3.66 1.42 -11.64 173.01 -3.66 1.42 -11.2 173.69 -5.19 1.42 -10.33 177.24 -5.19 1.42 -10.77 178.84 -5.19 1.42 -9.68 181.33 -5.19 1.42 -11.42 183.46 -5.19 1.42 -8.81 186.48 -5.19 1.42 -10.33 189.85 -5.19 1.42 -10.2 191.91 -5.19 1.42 -9.78 193.86 -3.6 1.42 -9.35 196.71 -3.6 1.42 -11.52 198.66 -6.1 1.42 -12.61 203.81 -6.1 1.42 -14.13 205.23 -7.14 1.42 -15.97 206.27 -7.14 1.42 1 34 -15.97 206.27 -7.14 1.42 -18.36 206.42 -11.18 1.07 -19.45 205.89 -11.18 1.07 -20.1 205.89 -11.18 1.07 -22.05 204.47 -11.18 1.07 -23.36 204.11 -12.07 1.07 -24.01 205.36 -12.07 1.07 -27.05 204.11 -12.07 1.07 -30.52 203.76 -12.07 1.07 -31.17 205 -17.73 1.07 -37.25 206.07 -17.73 1.07 -42.43 208.11 -22.04 1.07 -48.51 211.13 -22.04 1.07 -52.85 214.33 -22.19 1.07 -54.81 214.68 -22.19 1.07 -57.19 215.84 -22.19 1.07 -59.14 216.53 -22.19 1.07 -61.97 217.78 -22.19 1.07 -63.7 218.66 -20.98 1.07 -66.74 219.02 -20.98 1.07 -68.92 221.15 -20.98 1.07 -72.61 222.57 -20.98 1.07 -76.07 222.22 -20.98 1.07 -77.38 222.58 -20.98 1.07 -78.9 221.51 -20.98 1.07 -80.65 222.22 -20.98 1.07 -82.39 221.33 -20.98 1.07 -85 220.98 -19.02 1.07 -86.08 220.8 -19.02 1.07 -88.91 220.27 -19.02 1.07 -91.51 220.27 -19.02 1.07 -95.74 219.49 -19.02 1.07 -97.92 218.78 -23.2 1.07 -97.92 218.78 -23.2 1.07 1 34 -15.97 206.27 -7.14 1.42 -17.32 207.78 -7.14 1.42 -21.01 208.66 -7.14 1.42 -22.1 208.66 -7.14 1.42 -22.97 210.8 -7.14 1.42 -24.05 210.09 -7.14 1.42 -26.01 209.91 -7.14 1.42 -27.96 210.97 -7.14 1.42 -31 213.64 -7.14 1.42 -34.48 215.06 -7.14 1.42 -38.31 217.82 -4.5 1.42 -40.7 219.24 -11.78 1.42 -41.57 221.2 -11.78 1.42 -43.3 221.73 -11.78 1.42 -45.69 221.02 -11.78 1.42 -47.65 222.08 -11.78 1.42 -50.27 224.75 -11.78 1.07 -52.88 226.35 -11.78 1.07 -54.32 228.35 -11.78 1.07 -56.51 227.62 -11.78 1.07 -58.68 231 -11.78 1.07 -59.55 232.06 -11.78 1.07 -65.85 236.5 -14.47 1.07 -66.93 238.1 -14.47 1.07 -67.37 239.7 -14.47 1.07 -67.8 241.66 -14.47 1.07 -69.77 242.51 -14.47 1.07 -70.21 244.11 -14.47 1.07 -75.85 246.6 -14.47 1.07 -77.16 248.17 -15.04 1.07 -79.11 251.73 -15.04 1.07 -82.37 252.61 -15.04 1.07 -84.11 253.68 -15.04 1.07 -85.41 255.99 -15.04 1.07 1 23 -85.41 255.99 -15.04 1.07 -86.5 257.09 -14.51 1.07 -89.98 258.86 -14.51 1.07 -92.37 261 -14.51 1.07 -96.71 262.24 -15.16 1.07 -99.53 262.6 -15.16 1.07 -101.49 261.35 -15.16 1.07 -104.96 259.93 -15.53 1.07 -107.39 261.07 -17.38 1.07 -108.26 261.07 -12.68 1.07 -109.56 261.42 -12.68 1.07 -111.73 261.95 -12.68 1.07 -113.04 263.02 -12.68 1.07 -114.99 264.62 -12.68 1.07 -117.6 266.75 -12.68 1.07 -121.51 267.46 -12.68 1.07 -125.2 267.46 -12.68 1.07 -128.02 267.04 -6.29 1.07 -132.37 270.78 -6.29 1.07 -138.23 270.95 -6.29 1.07 -139.75 270.78 -10.34 1.07 -139.77 270.95 -10.34 1.07 -139.55 270.95 -10.34 1.07 1 18 -85.41 255.99 -15.04 1.07 -85.41 258.48 -21.14 1.42 -86.06 261.32 -21.14 1.42 -86.28 263.45 -21.14 1.42 -85.84 264.16 -24.38 1.07 -82.58 265.58 -24.38 1.07 -82.8 266.47 -27.63 1.07 -83.24 267.36 -38.29 1.07 -85.19 266.83 -30.25 1.07 -83.67 268.43 -30.25 1.07 -83.89 268.96 -36.63 1.07 -85.63 268.43 -36.63 1.07 -86.49 268.96 -48.14 1.07 -86.28 269.31 -48.14 1.07 -86.06 270.73 -26.45 1.07 -83.92 274.57 -26.45 1.07 -83.92 276.7 -26.45 1.07 -83.71 276.7 -56.99 1.07 CONNECTIONS: 0 1 1 1 1 1 3 1 3 1 5 1 6 1 6 1 8 1 8 1 5 1 11 1 11 1 0 1 0 1 1 1 1 1 3 1 4 1 4 1 3 1 0 1 0 1 1 1 1 1 3 1 4 1 5 1 5 1 4 1 3 1 9 1 9 1 0 1 12 1 12 1 0 1 0 1 2 1 2 1 4 1 4 1 /*----------------------------------------------------------------*/ proc geometry() { /* NULL geometry procedure: keeps the user from calling the geometry procedure in isolation. */ printf("\nYou must re-read the entire geometry\n") printf("file to execute geometry().\n\n") }