/*---------------------------------------------------------------- modified by pv 5/10/98 %W% %G% 960427a.out translated Wed Sep 30 17:41:49 1998 by ntscable 2.0 source file syntax: Nevin output file syntax: CABLE soma: diameter = 0 um length = 0 um area = 0 um2 0 three-D points 1 primary neurites 20 branches totaling 3054.36 um in length, 16000.4 um2 in area 1134 tree points translated to 40 segments (1 requested) Neurites divided into segments of equal dx between adjacent digitized branch points. Segment length constrained to be < 3054.36 um. /* DIG version 5.19 3-28-89 Rocky Nevin Comments: Neuron ----------------------------------------------------------------*/ sommax = 3 /* create sections */ create soma[sommax+1],\ dend1[39] /*----------------------------------------------------------------*/ proc geometry() { local i, j /* soma geometry */ soma[0] { nseg = 1 pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } for i = 1,sommax { /* somatic moiety*/ soma[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = sommax,38 { /* neurite geometry*/ dend1[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } /* branching topology*/ for i = 1,38 { alpha = fscan() beta = fscan() if (alpha > sommax && i>sommax) { dend1[alpha] connect dend1[i] (0), beta } if (alpha > sommax && i<sommax+1) { dend1[alpha] connect soma[i] (0), beta } if (alpha < sommax+1 && i>sommax) { soma[alpha] connect dend1[i] (0), beta } if (alpha < sommax+1 && i<sommax+1) { soma[alpha] connect soma[i] (0), beta } } for i = 0,sommax dend1[i] delete_section() } geometry() SOMA COORDINATES AND DIAMETERS: 2 -1.97 0.13 -1.61 16.34 -1.97 0.13 -1.62 16.34 NEURITE COORDINATES AND DIAMETERS: 1 2 -1.97 0.13 -1.6 16.34 3.67 0.13 7.11 14.57 1 2 3.67 0.13 7.11 14.57 9.54 1.55 5.55 3.2 1 2 9.54 1.55 5.55 3.2 4.98 2.44 8.28 3.2 1 2 4.98 2.44 8.28 3.2 -5.66 3.51 -8.78 3.2 1 2 -5.66 3.51 -8.78 3.2 -10.66 -2 0.38 3.55 1 2 -10.66 -2 0.38 3.55 -10.88 -1.82 2.26 3.91 1 6 -10.66 -2 0.38 3.55 -12.61 -2.55 2.26 3.55 -14.35 -3.26 2.26 3.55 -15.87 -4.15 2.26 3.55 -17.61 -4.86 2.26 3.91 -18.9 -5.33 2.26 4.26 1 13 -18.9 -5.33 2.26 4.26 -22.16 -9.24 2.26 2.49 -23.68 -11.55 2.26 2.49 -24.13 -13.33 2.26 2.13 -25.65 -14.77 2.26 2.13 -26.52 -16.37 2.26 2.13 -27.39 -17.79 2.26 2.13 -28.69 -19.39 2.26 1.78 -29.27 -20.49 2.26 1.78 -30.35 -21.55 2.26 2.13 -31.01 -22.62 2.26 2.49 -31.66 -23.69 2.26 2.84 -32.09 -24.75 0.79 2.84 1 20 -32.09 -24.75 0.79 2.84 -32.31 -26.53 0.79 2.13 -32.96 -27.95 2.29 1.78 -34.05 -28.5 0.14 1.78 -34.48 -29.57 0.14 1.78 -34.48 -30.99 0.14 2.13 -34.7 -32.77 0.14 2.13 -34.48 -34.9 0.14 2.13 -33.83 -35.79 0.14 2.13 -33.61 -36.85 0.14 2.13 -33.39 -38.1 0.14 1.78 -33.39 -39.7 -1.5 1.78 -33.61 -42.36 0.13 2.13 -33.39 -43.43 0.13 2.13 -33.39 -45.03 -2.25 2.13 -33.18 -45.91 -2.25 2.13 -33.18 -46.98 -2.25 2.13 -33.39 -49.47 -1.18 2.13 -33.61 -50.36 -3.88 2.13 -32.66 -52.03 -3.88 2.13 1 94 -32.66 -52.03 -3.88 2.13 -32.88 -54.54 -3.88 1.78 -32.88 -55.61 -3.88 1.78 -32.88 -57.21 -3.88 1.78 -33.75 -58.81 -3.88 1.78 -34.4 -60.23 -3.88 1.78 -34.62 -60.58 -1.11 1.42 -34.18 -61.83 -1.11 1.42 -34.84 -63.07 -1.11 1.42 -35.27 -64.85 -3.83 1.78 -35.05 -66.62 -3.83 1.78 -34.03 -68.21 -3.83 1.78 -34.03 -70.36 -3.83 1.78 -34.03 -72.32 -3.83 1.78 -34.05 -73.38 -2.57 1.78 -34.05 -75.52 -2.57 1.78 -34.05 -76.94 -2.57 1.78 -34.48 -77.47 -2.57 1.78 -35.13 -78.89 -1.46 1.78 -35.78 -80.31 -1.12 1.78 -36.22 -81.56 4.38 1.78 -36.98 -83.81 4.38 1.78 -37.64 -84.7 4.38 1.78 -38.5 -85.76 4.38 1.78 -39.37 -86.47 7.94 1.42 -40.24 -88.07 7.94 1.42 -41.54 -89.85 7.94 1.42 -42.41 -91.45 7.94 1.78 -42.85 -92.69 7.94 1.78 -43.06 -93.94 7.94 1.78 -42.85 -95.53 5.78 1.78 -42.41 -97.13 5.78 1.78 -42.75 -98.85 5.78 1.78 -42.98 -99.59 5.9 1.42 -42.77 -101.19 5.9 1.42 -43.85 -102.43 5.9 1.42 -44.5 -103.67 5.9 1.42 -44.94 -105.27 3.49 1.42 -45.37 -107.25 3.49 1.78 -46.24 -109.2 4.96 1.78 -47.33 -110.62 4.96 1.78 -47.98 -112.4 4.96 1.78 -47.92 -114.79 4.96 1.42 -47.92 -116.39 4.96 1.42 -47.92 -117.63 2.5 1.42 -48.35 -119.41 2.5 1.42 -48.35 -120.65 2.5 1.42 -48.35 -121.72 2.5 1.42 -48.35 -122.96 2.5 1.42 -48.13 -125.09 2.5 1.42 -47.26 -126.87 -0.29 1.42 -47.26 -128.29 -0.29 1.42 -47.1 -130.03 -0.29 1.42 -46.03 -131.81 -0.29 1.42 -45.16 -134.12 -2 1.42 -44.51 -135.54 -2 1.78 -43.86 -137.32 -2 1.78 -42.99 -138.91 -2 1.78 -41.47 -140.87 -2 1.78 -40.38 -141.76 -5.09 1.78 -39.08 -143.36 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1.42 -87.25 -50.21 -130.13 1.42 -89.64 -49.32 -131.66 1.42 -93.55 -49.32 -131.83 1.42 -96.37 -49.34 -133.24 1.07 1 144 -32.09 -24.75 0.79 2.84 -34.05 -24.75 1.26 1.42 -35.35 -24.57 1.26 1.42 -36.65 -24.93 3.08 1.78 -38.39 -26 2.48 1.78 -39.69 -26.71 4 1.42 -41.86 -26.53 4 1.42 -42.73 -27.06 4 1.42 -43.82 -29.19 5.16 1.42 -45.34 -29.9 5.16 1.78 -46.43 -30.79 7.58 1.78 -47.29 -31.32 7.58 1.42 -48.16 -32.39 9.42 1.78 -49.25 -33.81 9.42 1.78 -49.67 -35.48 10.41 1.78 -52.28 -36.9 10.41 2.13 -53.58 -37.44 10.41 1.78 -55.32 -37.79 10.41 1.78 -57.06 -39.39 9.73 1.78 -59.01 -40.46 9.73 1.78 -60.97 -41.17 9.73 1.78 -62.71 -41.52 9.73 1.78 -64.01 -41.35 9.73 1.78 -65.31 -41.7 9.74 1.78 -66.61 -42.95 9.74 1.78 -67.92 -44.19 9.74 1.78 -68.94 -45.35 9.74 1.78 -71.55 -45.71 9.74 1.42 -73.29 -46.06 8.82 1.42 -74.37 -46.42 8.82 1.42 -75.68 -47.13 8.82 1.42 -77.41 -46.95 8.82 1.42 -79.37 -47.13 8.82 1.42 -81.11 -47.84 8.82 1.42 -83.49 -47.48 10.72 1.78 -84.36 -47.66 10.72 1.78 -85.67 -47.66 10.72 1.42 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38.83 7.32 4.7 1.78 40.13 6.61 4.7 2.13 41.22 5.36 4.7 2.13 42.74 4.47 7 1.78 43.39 3.59 7 1.78 44.91 3.23 7 1.42 46.65 2.52 7 1.42 47.69 1.6 7 1.42 48.99 0.18 7 1.42 50.08 -1.24 7 1.42 51.38 -2.66 7 1.78 52.25 -3.72 7 1.78 54.21 -4.08 7 1.78 55.29 -4.44 7 1.78 56.6 -5.86 7 1.42 56.81 -7.28 7 1.42 58.33 -8.7 7 1.42 60.51 -9.94 3.42 1.42 61.81 -11.54 6.03 1.42 63.11 -13.85 6.03 1.42 64.93 -15.33 6.03 1.42 66.23 -16.93 6.03 1.42 66.23 -19.06 6.03 1.42 66.88 -20.3 4.94 1.42 68.4 -22.43 4.26 1.78 68.62 -23.5 4.26 2.13 67.97 -24.92 4.26 1.78 67.32 -26.88 4.26 1.42 66.23 -28.83 4.26 1.42 66.42 -31.44 4.26 1.42 66.64 -32.33 4.26 1.42 65.12 -34.46 4.26 1.42 64.47 -36.06 4.26 1.42 63.82 -38.19 4.26 1.42 62.95 -39.61 4.26 1.42 62.95 -41.03 4.26 1.42 62.73 -42.81 4.26 1.42 62.3 -43.7 4.26 1.42 60.89 -45.88 1.37 1.42 59.8 -46.59 1.37 1.42 57.63 -48.55 1.46 1.42 55.67 -50.86 -1.45 1.42 53.72 -52.99 -4.36 1.42 53.07 -55.65 -5.88 1.42 51.76 -58.32 -8.28 1.42 50.9 -61.87 -8.28 1.42 49.37 -65.77 -12.03 1.42 48.06 -68.26 -12.03 1.42 46.76 -71.1 -12.03 1.42 44.81 -73.59 -12.03 1.42 43.07 -75.01 -12.03 1.42 40.68 -78.56 -16.1 1.42 39.27 -80.57 -16.1 1.42 36.45 -81.82 -19.3 1.42 32.97 -85.04 -22.46 1.42 31.88 -86.1 -22.46 1.42 30.15 -87.7 -25.92 1.42 26.89 -88.94 -28.59 1.42 23.2 -90.72 -31.68 1.42 19.93 -94.82 -34.84 1.42 17.11 -98.37 -34.84 1.42 14.94 -100.5 -34.84 1.42 12.11 -106.54 -39.42 1.42 9.82 -110.57 -39.42 1.42 7.21 -113.24 -41.92 1.42 4.17 -115.37 -41.92 1.42 2 -118.41 -43.53 1.42 0.26 -121.61 -49.97 1.42 -0.9 -124.59 -49.97 1.42 -4.15 -127.61 -49.97 1.42 -5.24 -129.39 -54.72 1.07 -4.81 -132.94 -54.72 1.07 -4.37 -135.08 -56.69 1.07 1 20 29.71 9.27 5.28 2.84 29.35 11.05 5.02 2.49 29.79 12.29 5.24 1.78 30.66 13.71 5.24 1.78 32.18 15.31 5.79 1.78 33.7 16.38 7.82 1.78 35 16.91 7.82 1.78 36.74 17.62 7.96 1.78 37.82 18.51 12.11 1.78 39.34 20.64 12.11 1.78 40.65 22.95 12.11 1.78 41.3 24.37 12.11 1.78 41.62 25.74 14.58 1.78 42.26 27.31 14.58 1.78 43.56 28.56 14.58 1.78 44.86 29.98 16.44 1.78 46.17 31.58 16.44 1.78 46.82 33 16.44 1.78 47.47 34.06 16.86 1.78 48.56 35.48 16.86 1.78 1 39 48.56 35.48 16.86 1.78 50.08 36.37 15.34 1.42 51.38 36.91 15.34 1.42 51.81 38.33 15.34 1.42 52.25 39.57 15.34 1.42 52.41 41.25 16.88 1.78 53.06 41.96 16.88 1.78 54.36 43.91 16.88 1.78 55.23 45.69 19 1.78 56.1 46.75 19 1.42 56.97 47.29 19 1.42 57.62 49.6 20.75 1.42 58.05 50.66 20.75 1.42 58.7 51.91 20.75 1.42 59.79 52.79 20.75 1.42 59.79 54.04 20.75 1.42 59.79 55.16 20.75 1.42 60.44 56.58 20.75 1.42 61.53 57.82 20.75 1.42 62.18 58.89 21.81 1.42 63.48 60.84 21.81 1.42 64.13 62.09 22.37 1.42 64.35 64.22 22.37 1.42 64.35 66.35 22.37 1.42 64.78 68.13 25.18 1.42 65.22 70.44 25.18 1.42 66.07 71.74 25.18 1.42 66.51 73.51 25.18 1.42 66.29 75.29 25.18 1.42 66.29 77.24 25.18 1.42 66.07 78.84 25.18 1.42 66.94 81.33 25.18 1.42 66.51 82.22 29.58 1.07 66.73 83.99 29.58 1.07 67.38 86.3 29.58 1.07 67.39 88.22 30.5 1.07 68.26 91.24 30.5 1.07 68.69 93.2 30.5 1.07 70.21 94.8 30.9 1.07 1 30 48.56 35.48 16.86 1.78 48.81 37.62 16.86 1.78 49.89 39.73 16.86 1.42 49.24 41.87 16.86 1.42 49.02 43.11 16.86 1.42 49.46 44.53 16.86 1.42 49.02 45.77 16.86 1.42 48.37 47.2 17.24 1.42 47.07 47.37 14.39 1.42 45.98 47.91 14.39 1.42 44.9 48.97 13.17 1.42 44.25 49.86 13.17 1.42 41.8 49.18 9.78 1.42 38.54 48.98 6.48 1.42 37.24 48.09 6.48 1.42 35.07 48.45 3.72 1.42 30.51 48.27 0.81 1.42 27.47 48.45 -0.67 1.42 24.64 49.69 -5.23 1.42 22 49.87 -8.1 1.42 17.66 50.23 -8.1 1.42 14.83 50.23 -12.1 1.42 12.44 50.05 -12.1 1.42 10.06 50.05 -12.1 1.42 7.67 52 -14.81 1.42 5.49 52.71 -14.81 1.42 2.38 52.87 -14.63 1.42 -2.18 53.23 -14.63 1.42 -4.58 52.87 -14.63 1.07 -9.14 52.16 -14.63 1.07 1 3 3.67 0.13 7.11 14.57 5.19 -1.99 3.34 1.07 5.19 -2 3.34 1.07 CONNECTIONS: 0 1 1 1 2 1 3 1 4 1 4 1 6 1 7 1 8 1 8 1 7 1 6 1 12 1 13 1 13 1 15 1 15 1 12 1 3 1 19 1 19 1 2 1 22 1 23 1 24 1 24 1 23 1 22 1 28 1 29 1 29 1 28 1 1 1 33 1 33 1 35 1 35 1 0 1 /*----------------------------------------------------------------*/ proc geometry() { /* NULL geometry procedure: keeps the user from calling the geometry procedure in isolation. */ printf("\nYou must re-read the entire geometry\n") printf("file to execute geometry().\n\n") }