/* converted by pv 30/9/98
Data published in:
Rihn, L. and Claiborne, B.J. Dendritic growth and regression
in rat dentate granule cells during late postnatal development.
Dev. Brain Research 54 (1990) 115-124.
Dentate Granule Cell:
Labeling Method: Intracellular injection using HRP filled
sharp electrodes in thick 400um thick
whole-mounts.
Cell id: 411884b.out
Animal: Sprague Dawley Rat obtained from Harlan Sprague Dawley
Age of animal: Postnatal day 38
*Location: Suprapyramidal blade of the dentate gyrus
-- Layer position of cell 2.3
(0 bottom - 6 top of cell body layer)
-- Blade Position of cell 3.5
(0 near crest - 6 tip of suprapyramidal blade)
* A gradient referring to the location of the cell.
dummy = fscan()
*/
seg= 230
sommax = 4
/* variable arrayvals */
double comp[seg],pare[seg],xval[seg],yval[seg],zval[seg],len[seg],dia[seg]
double peakit[seg]
create dend[seg] /* creates the comparetments */
create soma
proc geometry() {
for i=0,seg-1 { /* read in variables */
comp[i] = fscan()
pare[i] = fscan()
dummy = fscan()
xval[i] = fscan()
yval[i] = fscan()
zval[i] = fscan()
dia[i] = fscan()
len[i] = fscan()
dummy_termination = fscan()
}
soma { for i = 0,sommax { pt3dadd(xval[i],yval[i],zval[i],dia[i]) }
nseg = int(L/5)
}
for i=sommax+1,seg-1 { /* all other comparetments */
dend[i] {
nseg=1
pt3dadd(xval[pare[i]],yval[pare[i]],zval[pare[i]],dia[pare[i]])
pt3dadd(xval[i],yval[i],zval[i],dia[i])
}
}
for i=1,seg-1 { if (pare[i] > sommax) dend[pare[i]] connect dend[i](0),1 else {
soma connect dend[i](0),pare[i]/sommax }
}
for i = 0,sommax { dend[i] delete_section() }
}
geometry()
SOMA
0 -1 1 0.2 -0.2 0 4.51 0.01 0
1 0 2 0.99 4.31 0 8.11 4.57867 0
2 1 3 2.32 8.59 0 9.91 4.48189 0
3 2 4 3.38 14.44 -3.44 4.96 6.86875 0
4 3 10 2.01 20.4 -2.7 3.6 6.16004 0
DENDRITIC TREE
5 4 11 1.74 24.68 -2.7 3.6 4.28851 0
6 5 12 2.01 27.61 -2.7 3.15 2.94241 -1
7 6 18 2.01 34.59 -2.7 3.15 6.98 0
8 7 17 1.74 33.69 -2.7 3.15 0.939628 0
9 8 19 2.01 35.04 -2.29 2.25 1.43649 0
10 9 20 1.74 36.17 -3.93 2.25 2.00983 -1
11 10 21 3.33 40.23 -0.15 2.7 5.77062 0
12 11 22 2.54 51.69 4.42 2.7 12.3629 0
13 12 23 2.81 56.87 8.18 2.7 6.40647 0
14 13 24 3.07 62.5 8.18 2.7 5.636 0
15 14 25 3.53 71.16 13.38 2.7 10.1117 0
16 15 26 3.53 77.02 12.77 2.7 5.89166 0
17 16 29 3.47 75.47 18.5 2.25 5.93624 -1
18 17 31 3.47 82.67 13.34 2.25 8.85808 0
19 18 32 3.74 87.4 13.34 2.25 4.7377 0
20 19 33 4.26 91.68 13.34 2.25 4.31147 0
21 20 34 4.26 94.61 13.34 2.25 2.93 -1
22 21 35 6.91 101.15 13.34 2.25 7.05649 0
23 22 36 8.5 110.83 13.34 2.25 9.80971 0
24 23 37 10.19 118.91 13.34 2.25 8.25485 0
25 24 38 12.84 128.37 17.14 2.25 10.5335 0
26 25 39 15.45 135.06 18.06 2.25 7.23979 0
27 26 40 18.1 144.52 15.78 2.25 10.0853 0
28 27 41 19.95 153.08 15.78 2.25 8.75763 0
29 28 42 22.05 166.07 15.78 2.25 13.1587 0
30 29 43 24.17 175.3 15.78 2.25 9.47034 0
31 30 44 25.79 182.13 15.78 2.25 7.01949 0
32 31 45 26.05 184.16 15.78 2.25 2.04658 -1
33 32 46 31.88 190.47 15.78 2.25 8.59098 0
34 33 47 36.12 197.45 15.78 2.25 8.16688 0
35 34 48 41.23 206.41 15.34 2.25 10.3241 0
36 35 49 45.2 211.14 15.34 2.25 6.17526 0
37 36 50 51.29 219.93 13.46 2.25 10.8576 0
38 37 51 55.64 226.78 10.92 2.25 8.50274 0
39 38 52 57.75 229.71 10.92 1.8 3.61068 0
40 39 53 59.61 232.42 10.92 1.8 3.2869 0
41 40 54 60.93 236.92 10.92 1.8 4.68961 0
42 41 55 63.05 238.5 9.22 1.8 3.14337 0
43 42 56 68.76 241.35 9.22 1.8 6.38174 0
44 43 57 72.2 245.41 12.79 1.8 6.40797 0
45 44 58 75.65 250.59 12.79 1.8 6.22374 0
46 45 59 78.82 254.19 12.79 1.8 4.79676 0
47 46 60 81.21 258.25 12.79 1.8 4.71123 0
48 47 61 84.31 264.31 12.79 1.8 6.80688 0
49 48 62 86.43 268.14 12.79 1.8 4.37759 0
50 49 63 88.28 271.29 12.79 1.8 3.65308 0
51 50 64 89.61 273.77 12.79 1.8 2.81413 0
52 51 65 91.73 278.5 12.79 1.8 5.18337 0
53 52 66 93.85 280.23 16.52 1.8 4.62604 -2
54 32 67 28.05 194.59 19.22 1.8 11.1633 0
55 54 68 29.11 203.82 15.48 1.8 10.0152 0
56 55 69 28.41 207.83 15.48 1.8 4.07064 0
57 56 70 29.99 215.26 15.48 1.8 7.59614 0
58 57 71 31.58 221.8 16.78 1.8 6.8549 0
59 58 72 31.58 231.48 16.33 1.8 9.69045 0
60 59 73 32.33 231.63 16.93 1.8 0.972111 -1
61 60 74 33.65 236.81 21.41 1.8 6.97461 0
62 61 75 33.65 242.21 21.41 1.8 5.4 0
63 62 76 33.92 250.55 24.38 1.8 8.85717 0
64 63 77 35.59 260.34 24.38 1.8 9.93141 0
65 64 78 36.91 266.19 24.38 1.8 5.99707 0
66 65 79 38.24 274.75 24.38 1.8 8.66271 0
67 66 80 39.26 280.18 26.58 1.8 5.94687 0
68 67 81 43.76 286.04 28.9 1.8 7.74416 0
69 68 82 44.29 292.57 28.3 1.8 6.57889 0
70 69 83 44.55 298.43 33.45 1.8 7.80575 0
71 70 84 41.95 302.93 33.44 1.8 5.19712 -2
72 60 85 31.81 239.06 16.08 1.8 7.49652 0
73 72 86 31.81 245.14 16.08 1.8 6.08 0
74 73 87 32.34 248.52 16.08 1.8 3.4213 0
75 74 88 33.66 255.05 16.08 1.8 6.66208 0
76 75 89 35.06 261.06 16.08 1.8 6.17091 0
77 76 90 35.06 271.64 16.08 1.8 10.58 0
78 77 91 35.85 279.3 17.57 1.8 7.84346 0
79 78 92 35.01 289.34 17.57 1.8 10.0751 0
80 79 93 34.48 296.55 17.57 1.8 7.22945 0
81 80 94 35.01 306.91 17.57 1.8 10.3735 0
82 81 95 36.79 318.26 17.57 1.8 11.4887 0
83 82 96 37.05 321.64 18.86 1.8 3.62713 -2
84 21 97 2.61 104.64 13.34 2.25 10.1648 0
85 84 98 3.14 108.92 13.34 2.25 4.31269 0
86 85 99 -0.3 119.73 16.22 1.8 11.704 0
87 86 100 -2.65 122.58 16.22 1.8 3.69391 0
88 87 101 -5.57 136.79 13.78 1.8 14.7107 0
89 88 102 -6.89 147.16 12.67 1.8 10.5124 0
90 89 103 -7 151.73 13.75 1.8 4.69717 0
91 90 104 -8.85 161.19 13.75 1.8 9.6392 0
92 91 105 -10.44 171.1 12.3 1.8 10.1409 0
93 92 106 -11.99 179.56 15.72 1.8 9.25584 0
94 93 107 -11.99 190.15 15.72 1.8 10.59 0
95 94 108 -15.24 200.39 16.36 1.8 10.7624 0
96 95 109 -17.89 208.95 17.06 1.8 8.98811 0
97 96 110 -19.39 218.49 19.81 1.8 10.0411 0
98 97 111 -22.57 230.43 19.34 1.8 12.3651 0
99 98 112 -24.78 238.74 22.36 1.8 9.11376 0
100 99 113 -26.9 247.3 22.36 1.8 8.81862 0
101 100 114 -28.75 252.48 22.36 1.8 5.50045 0
102 101 115 -30.06 253.75 22.36 1.8 1.82455 -1
103 102 116 -29.79 263.44 21.98 1.8 9.70121 0
104 103 117 -30.59 271.1 24.26 1.8 8.03206 0
105 104 118 -28.81 275.51 23.27 1.8 4.85763 0
106 105 119 -30.4 285.42 23.27 1.8 10.0367 0
107 106 120 -31.46 293.98 24.81 1.8 8.76178 0
108 107 121 -32.72 298.23 24.81 1.8 4.43284 0
109 108 122 -32.99 303.86 27.06 1.8 6.06896 0
110 109 123 -32.46 307.02 26.88 1.8 3.20919 0
111 110 124 -30.08 309.49 31.21 1.8 5.52397 0
112 111 125 -27.16 309.94 29.14 1.8 3.60746 -2
113 102 126 -36.08 266.09 26.21 1.8 14.2597 0
114 113 127 -39.26 272.85 26.21 1.8 7.47061 0
115 114 128 -46.94 280.23 26.21 1.8 10.6511 0
116 115 129 -50.65 285.19 26.28 1.8 6.1944 0
117 116 130 -53.03 289.47 29.3 1.8 5.75354 0
118 117 131 -56.21 293.52 29.3 1.8 5.14926 0
119 118 132 -59.38 300.78 32.38 1.8 8.49958 0
120 119 133 -63.61 307.09 33.1 1.8 7.63069 0
121 120 134 -66.79 312.05 37.56 1.8 7.38956 0
122 121 135 -70.84 314.25 37.56 1.8 4.60896 0
123 122 136 -73.22 315.38 34.24 1.8 4.23836 -2
124 17 137 4.39 80.71 17.97 1.8 5.34648 0
125 124 138 4.92 86.11 17.97 1.8 5.42595 0
126 125 139 5.19 92.42 21.45 2.25 7.21106 0
127 126 140 5.72 100.31 23.42 2.25 8.14947 0
128 127 141 5.21 106.51 24.74 2.25 6.35944 0
129 128 142 4.94 109.66 24.74 2.25 3.16155 0
130 129 143 5.21 112.36 27.91 2.25 4.17274 -1
131 130 144 7.85 116.42 27.91 1.8 4.84285 0
132 131 145 10.77 120.7 27.91 1.8 5.1812 0
133 132 146 14.51 125.33 26.76 1.8 6.06193 0
134 133 147 17.95 129.61 26.76 1.8 5.49108 0
135 134 148 22.72 135.24 29.42 1.8 7.84381 0
136 135 149 25.89 139.97 29.42 1.8 5.69401 0
137 136 150 28.98 142.28 29.42 1.8 3.858 0
138 137 151 31.1 147.46 33.66 1.8 7.02171 0
139 138 152 34.27 152.87 33.66 1.8 6.27033 0
140 139 153 37.98 159.85 38.18 1.8 9.10576 0
141 140 154 41.11 165.71 38.18 1.8 6.64353 0
142 141 155 42.97 171.56 37.9 1.8 6.14496 0
143 142 156 45.35 178.32 39.88 1.8 7.43521 0
144 143 157 48.31 183.16 45.9 1.8 8.2721 0
145 144 158 52.02 188.79 45.9 1.8 6.74248 0
146 145 159 53.87 192.84 46.74 1.8 4.53107 0
147 146 160 56.52 199.15 51.47 1.8 8.31934 0
148 147 161 59.18 204.86 50.61 1.8 6.35762 0
149 148 162 62.89 210.26 52.73 1.8 6.88611 0
150 149 163 65.8 215.22 54.84 1.8 6.1255 0
151 150 164 67.66 222.43 59.94 1.8 9.02517 0
152 151 165 73.69 227.78 59.94 1.8 8.06123 0
153 152 166 76.87 235.89 59.88 1.8 8.71138 0
154 153 167 80.57 242.42 63.91 1.8 8.51891 0
155 154 168 84.24 246.23 63.91 1.8 5.29009 0
156 155 169 87.15 254.11 66.46 1.8 8.77867 0
157 156 170 89.27 256.82 66.46 1.8 3.44071 0
158 157 171 92.98 263.12 67.22 1.8 7.35063 0
159 158 172 95.05 265.23 68.93 1.8 3.41484 0
160 159 173 98.23 266.8 68.93 1.8 3.54645 0
161 160 174 99.29 270.63 68.93 1.8 3.97398 0
162 161 175 104.59 279.42 70.46 1.8 10.3776 0
163 162 176 107.5 284.6 71.31 1.8 6.00192 0
164 163 177 105.81 292.23 71.31 1.8 7.81492 0
165 164 178 110.58 303.5 70.44 1.8 12.2688 0
166 165 179 113.71 307.23 69.54 1.8 4.95175 0
167 166 180 115.57 309.03 68.57 1.8 2.76415 -2
168 130 181 3.74 117.38 26.7 1.8 5.36893 0
169 168 182 5.06 116.48 43.92 1.8 17.294 -1
170 169 183 7.45 119.63 43.92 1.8 3.95406 0
171 170 184 6.92 131.12 49.83 1.8 12.9317 0
172 171 185 5.35 135.08 56.1 1.8 7.5802 0
173 172 186 6.67 144.09 63.94 1.8 12.0162 0
174 173 187 7.2 149.72 64.36 1.8 5.67047 0
175 174 188 3.69 162.02 68.15 1.8 13.3407 0
176 175 189 1.31 167.42 72.73 1.8 7.46999 0
177 176 190 -2.13 172.15 73.82 1.8 5.94934 0
178 177 191 -2.4 180.74 82.24 1.8 12.0315 0
179 178 192 -2.93 184.79 87.27 1.8 6.47953 -2
180 169 193 4.21 124.89 26.72 1.8 19.1648 0
181 180 194 4.21 125.34 29.16 1.8 2.48115 -1
182 181 195 4.21 130.07 30.82 1.8 5.01283 0
183 182 196 4.74 138.63 34.5 1.8 9.33257 0
184 183 197 4.47 147.16 36.79 1.8 8.83617 0
185 184 198 4.21 153.69 39.59 1.8 7.10975 0
186 185 199 4.47 159.55 42.42 1.8 6.51276 0
187 186 200 3.54 167.26 42.42 1.8 7.76589 0
188 187 201 3.54 171.54 43.33 1.8 4.37567 0
189 188 202 1.95 174.47 47.6 1.8 5.41719 0
190 189 203 1.95 183.7 48.58 1.8 9.28188 0
191 190 204 0.41 188.96 50.61 1.8 5.84466 0
192 191 205 -0.65 198.87 52.4 1.8 10.126 0
193 192 206 -0.65 206.08 60.45 1.8 10.8068 0
194 193 207 0.13 212.76 65.15 1.8 8.20493 0
195 194 208 0.92 217.94 67.98 1.8 5.95528 0
196 195 209 1.19 222.9 71.71 1.8 6.21188 0
197 196 210 0.13 227.4 74.2 1.8 5.25107 0
198 197 211 -0.39 234.41 81.09 1.8 9.8429 0
199 198 212 0.93 240.49 79.82 1.8 6.34994 0
200 199 213 0.66 241.62 78.53 1.8 1.73606 -2
201 181 214 2.61 134.69 29.16 1.8 9.48591 0
202 201 215 0.23 144.15 27.13 1.8 9.96378 0
203 202 216 -1.72 152.76 27.13 1.8 8.82806 0
204 203 217 -3.78 162.21 27.13 1.8 9.67192 0
205 204 218 -5.9 170.55 27.87 1.8 8.63699 0
206 205 219 -6.17 182.94 28.77 1.8 12.4256 0
207 206 220 -8.91 189.31 28.77 1.8 6.9343 0
208 207 221 -11.03 199.22 27.19 1.8 10.2567 0
209 208 222 -14.47 210.03 26.58 1.8 11.3605 0
210 209 223 -16.78 221.06 28.58 1.8 11.4454 0
211 210 224 -17.05 233 32.49 1.8 12.5668 0
212 211 225 -21.04 243.34 34.26 1.8 11.2236 0
213 212 226 -22.36 249.64 37.48 1.8 7.19728 0
214 213 227 -26.07 260.91 36.29 1.8 11.9245 0
215 214 228 -26.73 270.04 36.29 1.8 9.15382 0
216 215 229 -30.44 282.2 37.95 1.8 12.8213 0
217 216 230 -34.97 297.52 40.34 1.8 16.1535 0
218 217 231 -39.73 311.26 40.34 1.8 14.5412 0
219 218 232 -42.25 315.25 40.34 1.8 4.71916 0
220 219 233 -40.92 318.86 42.42 1.8 4.37349 -2
221 10 234 1.8 47.82 -11.08 2.25 13.6693 0
222 221 235 -0.05 58.85 -9.85 2.25 11.2515 0
223 222 236 -1.12 62.85 -9.85 2.25 4.14064 0
224 223 237 -0.86 67.36 -9 1.8 4.59676 0
225 224 238 -4.04 71.19 -6.41 1.8 5.61154 0
226 225 239 -5.89 76.6 -9.77 2.25 6.63176 0
227 226 240 -7.21 89.21 -9.53 2.25 12.6812 0
228 227 241 -9.25 98.04 -9.53 2.25 9.06259 -2
229 6 16 1.74 29.41 -2.7 3.15 1.82014 -2