// Type III granule cell // Modified from Upinder S. Bhalla, Caltech, May 1991, Aug 91 // fields are .. // name // parent // x,y,z // coords of endpoint. // dia // needed for memb props. All lengths are in microns. // ch name density // ch name density // ..... // Control lines start with '*'. Valid control options are // *relative - relative coords. // *absolute - absolute coords. // *asymmetric - use asymmetric compartments // *symmetric - use symmetric compartments // # name parent x y z d ch dens ch dens . . . *asymmetric *relative *cartesian *set_global RM 12.0 *set_global RA 0.5 *set_global CM 0.01 *set_global EREST_ACT -0.065 *memb_factor 2.0 *start_cell /library/notfakespine1 notfakespine1 none 10 0 0 2 neck . 1.9 0 0 0.23 head . 0.8 0 0 0.8 AMPA_NMDA -1000e-12 Ca_conc -26e10 *makeproto /library/notfakespine1 *start_cell /library/notfakespine2 notfakespine2 none 10 0 0 2 neck . -1.9 0 0 0.23 head . -0.8 0 0 0.8 AMPA_NMDA -1000e-12 Ca_conc -26e10 *makeproto /library/notfakespine2 //*add_spines DENDR_DIAM SPINE_DENS SPINE_SUR //Adds membrane surface for collapsed spines to all compartments with // dia <= DENDR_DIAM; units: DENDR_DIAM (um), SPINE_DENS (1/um), SPINE_SUR (um^2). *add_spines 5 0.0267 3.37 *start_cell soma none 0 0 8 6 Na2_rat_smsnn 1611 K_mit_usb 1313 KM_bsg_upi 1334 KA_bsg_yka 12.7 Rm 200e6 *polar trunk[0] soma 20 30 20 2 Na2_rat_smsnn 1.7 K_mit_usb 71 trunk[1] . 20 60 20 2 Na2_rat_smsnn 1.7 K_mit_usb 71 trunk[2] . 20 90 10 1.5 Na2_rat_smsnn 1.7 K_mit_usb 71 trunk[3] . 20 100 10 1.5 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine1 trunk[4] . 20 120 20 1.4 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine2 trunk[5] . 20 130 20 1.4 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine1 trunk[6] . 20 140 10 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine2 trunk[7] . 20 150 10 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine1 trunk[8] trunk[7] 40 160 10 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine2 trunk[9] . 40 170 10 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine1 trunk[10] . 40 140 20 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine2 trunk[11] . 20 160 10 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine1 trunk[12] . 20 180 10 1.3 Na2_rat_smsnn 1.7 K_mit_usb 71 *compt /library/notfakespine2 periph1[0] trunk[12] 10 10 20 1.25 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph1[1] . 10 20 20 1.25 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph1[2] . 10 20 20 1.25 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph1[3] . 10 0 20 1.25 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[0] . 10 5 20 1.2 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph11[1] . 10 30 10 1.2 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[2] . 10 20 30 1.18 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph11[3] . 10 20 30 1.17 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[4] . 10 10 20 1.16 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph11[5] . 10 10 40 1.15 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[6] . 10 30 40 1.14 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph11[7] . 10 40 10 1.13 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[8] . 10 50 10 1.12 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph11[9] . 10 30 20 1.11 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[10] . 10 20 20 1.10 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph11[11] . 10 20 30 1.09 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph11[12] . 10 30 20 1.08 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph12[0] periph1[3] 10 -90 30 1.2 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph12[1] . 10 -80 20 1.2 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph12[2] . 10 -80 10 1.18 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph12[3] . 10 -70 30 1.16 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph12[4] . 10 -90 40 1.15 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph12[5] . 10 -80 40 1.14 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph12[6] . 10 -70 20 1.13 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph12[7] . 10 -60 20 1.12 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph12[8] . 10 -70 50 1.11 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph12[9] . 10 -80 10 1.10 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph12[10] . 10 -90 20 1.09 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph2[0] trunk[12] 10 150 20 1.2 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph2[1] . 10 160 10 1.2 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph2[2] . 10 180 10 1.19 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph2[3] . 10 190 30 1.18 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph2[4] . 10 160 30 1.17 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph2[5] . 10 170 20 1.16 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph21[0] . 10 170 20 1.03 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph21[1] . 10 160 20 1.02 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph21[2] . 10 150 30 1.01 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph21[3] . 10 160 20 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph21[4] . 10 140 30 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph21[5] . 10 150 10 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph21[6] . 10 170 20 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph21[7] . 10 150 30 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph22[0] periph2[5] 10 185 20 1.05 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph22[1] . 10 190 20 1.03 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph22[2] . 10 200 30 1.02 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph22[3] . 10 190 20 1.01 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph22[4] . 10 200 30 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph22[5] . 10 220 10 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph22[6] . 10 190 30 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph22[7] . 10 190 40 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine2 periph22[8] . 10 200 30 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/notfakespine1 periph22[9] . 10 210 20 1.0 Na2_rat_smsnn 1355 K_mit_usb 243 *compt /library/compartment deep0[0] soma 10 55 150 1.0 deep0[1] . 10 35 160 0.8 deep0[2] . 10 45 140 0.8 deep0[3] . 10 55 140 0.7 deep0[4] . 10 65 130 0.6 deep0[5] . 10 45 160 0.5 deep1[0] soma 10 135 160 1.0 deep1[1] . 10 125 150 0.8 deep1[2] . 10 125 140 0.8 deep1[3] . 10 115 120 0.7 deep1[4] . 10 125 140 0.6 deep1[5] . 10 135 160 0.6 deep1[6] . 10 145 150 0.5 deep1[7] . 10 155 150 0.5 deep2[0] soma 10 -35 170 1.0 deep2[1] . 10 -45 160 0.8 deep2[2] . 10 -55 140 0.7 deep2[3] . 10 -45 150 0.6 deep3[0] soma 10 -125 160 1.0 deep3[1] . 10 -155 150 0.8 deep3[2] . 10 -145 140 0.7 deep3[3] . 10 -135 160 0.6 deep3[4] . 10 -125 150 0.6