#!/bin/bash #SBATCH --time=48:00:00 #SBATCH --ntasks=1 #SBATCH --cpus-per-task=1 #SBATCH --mem=64g #SBATCH --partition=norm # Arguments: # '-f', '--template_filename', type=str, # help='template filename for pn spike trains and network config' # '-o', '--output_directory', type=str, # help='directory to save simulation data in' # '-s', '--pn_shift', type=int, # help='shift the PN spikes over the PN population by this many PNs' # '-d', '--pn_dither', type=float, default=5.0, # help='dither the PN spikes by maximum of this much time (in ms)' # '--n_kc_vm', type=int, default=500, # help='number of KCs to record Vm from' # '--n_ggn_vm', type=int, default=100, # help='number of section of GGN in each region to record from' # '--recstep', default=5, type=int, # help='number of integration steps per data recording step' # '--simtime', type=float, help='Simulation time (ms)' module load neuron/7.5 source deactivate rhel7 source activate rhel7 echo `which python` GGNDIR=$HOME/projects/ggn OLD_PYTHONPATH=$PYTHONPATH export PYTHONPATH=$PYTHONPATH:$GGNDIR/mb:$GGNDIR/nrn:$GGNDIR/common:$GGNDIR/morphutils:/data/rays3/python/envs/rhel7/lib/python2.7/site-packages/ echo "PYTHONPATH=$PYTHONPATH" pushd $GGNDIR/mb unset DISPLAY echo "Arguments: $*" time python network/fixed_network_changing_stim.py $* popd export PYTHONPATH=$OLD_PYTHONPATH