from pylab import *
import scipy.io
import mytools
from matplotlib.collections import PatchCollection
Nperpop = 20
#filename = 'MMNs_2pm_sep_noISDIDD_Nperpop40_paramSD0.3_stimA150_130_gAMPA17.5_30.0_80.0_gNMDA5.827500000000001_9.99_26.64_gGABA35.0_35.0_dep1000_0.0_0.95_tau10.0_10.0_10.0_250.0.mat'
filename = 'MMNs_2pm_sep_noISDIDD_model0_CTRLpop_AUCbased_seed1.mat'
Nperpop = 40
def boxoff(ax,whichxoff='top'):
ax.spines[whichxoff].set_visible(False)
ax.spines['right'].set_visible(False)
ax.get_xaxis().tick_bottom()
ax.get_yaxis().tick_left()
fig1, axs = subplots(9,4)
axarr = axs.reshape(prod(axs.shape),).tolist()
for iax in range(0,4):
for iay in range(0,9):
axs[iay,iax].set_position([0.08+0.24*iax, 0.04+0.1*(8-iay),0.18,0.1])
if iay < 10:
axs[iay,iax].set_xticks([])
for iax in range(0,len(axarr)):
axarr[iax].tick_params(axis='both', which='major', labelsize=4)
boxoff(axarr[iax])
axarr[iax].set_yticks([])
for axis in ['top','bottom','left','right']:
axarr[iax].spines[axis].set_linewidth(0.2)
axarr[iax].set_xlim([0,3800])
axarr[iax].set_ylim([0,Nperpop+7])
#axs[0,0].text(0,Nperpop+7,'Excitatory deviant detecting output (EO)',fontsize=4,ha='left',va='top',fontweight='bold')
#axs[1,0].text(0,Nperpop+7,'Excitatory population for standards (ES)',fontsize=4,ha='left',va='top')
#axs[2,0].text(0,Nperpop+7,'Inhibitory population for standards (IS)',fontsize=4,ha='left',va='top')
#axs[3,0].text(0,Nperpop+7,'Excitatory population for standards, delayed (ESD)',fontsize=4,ha='left',va='top')
#axs[4,0].text(0,Nperpop+7,'Excitatory population for deviants (ED)',fontsize=4,ha='left',va='top')
#axs[5,0].text(0,Nperpop+7,'Inhibitory population for deviants (ID)',fontsize=4,ha='left',va='top')
#axs[6,0].text(0,Nperpop+7,'Excitatory pop. for deviants, delayed (ESD)',fontsize=4,ha='left',va='top')
#axs[7,0].text(0,Nperpop+7,'Exc. timer pop. receiving phase-locked input (EP)',fontsize=4,ha='left',va='top')
#axs[8,0].text(0,Nperpop+7,'Exc. timer pop. receiving phase-locked input, alt. phase (EP2)',fontsize=4,ha='left',va='top')
titles = ['Excitatory deviant detecting output (EO)',
'Excitatory population for standards (ES)',
'Inhibitory population for standards (IS)',
'Excitatory population for deviants (ED)',
'Inhibitory population for deviants (ID)',
'Exc. timer pop. receiving phase-locked input (EP)',
'Excitatory population for standards, delayed (ESD)',
'Excitatory pop. for deviants, delayed (EDD)',
'Exc. timer pop. receiving phase-locked input, alt. phase (EP2)']
for iay in range(0,len(titles)):
verts = [(0.08,0.04+0.1*(8-iay)+0.085), (0.08,0.04+0.1*(8-iay)+0.0995), (0.98,0.04+0.1*(8-iay)+0.0995), (0.98,0.04+0.1*(8-iay)+0.085)]
polygon = Polygon(verts, closed=True, transform=fig1.transFigure,
facecolor='#EEEEEE', edgecolor=None) #, alpha=0.5)
fig1.patches.append(polygon) # Attach directly to figure
fig1.text(0.085,0.04+0.1*(8-iay)+0.084, titles[iay], fontsize=5.5, ha='left', va='bottom')
MMNorder = [1,0,2,3]
axs[0,MMNorder[0]].set_title(' Omission',fontsize=8, pad=12)
axs[0,MMNorder[1]].set_title(' Frequency deviant',fontsize=8, pad=12)
axs[0,MMNorder[2]].set_title(' Duration deviant',fontsize=8, pad=12)
axs[0,MMNorder[3]].set_title('Inv. dur. deviant',fontsize=8, pad=12)
col = '#000000'
if True:
print('Loading '+filename)
A = scipy.io.loadmat(filename)
for q in ['standard', 'deviant', 'pacemaker', 'pacemaker2', 'output', 'standardBoost', 'deviantBoost']:
try:
shp = A[q].shape
for iy in range(0,shp[0]):
for ix in range(0,shp[1]):
if A[q][iy,ix].shape[0] == 1 and A[q][iy,ix].shape[1] > 1:
A[q][iy,ix] = A[q][iy,ix][0]
except:
pass
# Plotting the spikes for standardPopulationSpikeMonitor
#stimvec = [stimulusStandard,stimulusPaceMaker,stimulusDeviant]
#for stimind in [0,1,2]:
# thisstim = stimvec[stimind]
# lastval = 0
# dt = thisstim.dt*1000
# vals = thisstim.values
# for itime in range(0,len(vals)):
# axarr[0].plot([itime*dt,itime*dt,(itime+1)*dt],[lastval-150*stimind,vals[itime]-150*stimind,vals[itime]-150*stimind],lw=0.5)
# lastval = vals[itime]
plotteds = []
for iiMMN in range(0,4):
iMMN = MMNorder[iiMMN]
plotteds_this = []
axs[0,iiMMN].plot(A['output'][iMMN,0], A['output'][iMMN,1]+Nperpop*0, 'r.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len(A['output'][iMMN,0]))
axs[1,iiMMN].plot([A['standard'][iMMN,0][i] for i in range(0,len(A['standard'][iMMN,0])) if A['standard'][iMMN,1][i] < Nperpop], [A['standard'][iMMN,1][i]+Nperpop*0 for i in range(0,len(A['standard'][iMMN,0])) if A['standard'][iMMN,1][i] < Nperpop], 'b.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len([1 for i in range(0,len(A['standard'][iMMN,0])) if A['standard'][iMMN,1][i] < Nperpop]))
axs[2,iiMMN].plot([A['standard'][iMMN,0][i] for i in range(0,len(A['standard'][iMMN,0])) if A['standard'][iMMN,1][i] >= Nperpop], [A['standard'][iMMN,1][i]-Nperpop+Nperpop*0 for i in range(0,len(A['standard'][iMMN,0])) if A['standard'][iMMN,1][i] >= Nperpop], 'b.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len([1 for i in range(0,len(A['standard'][iMMN,0])) if A['standard'][iMMN,1][i] >= Nperpop]))
try:
axs[6,iiMMN].plot([A['standardBoost'][iMMN,0][i] for i in range(0,len(A['standardBoost'][iMMN,0])) if A['standardBoost'][iMMN,1][i] < Nperpop], [A['standardBoost'][iMMN,1][i]+Nperpop*0 for i in range(0,len(A['standardBoost'][iMMN,0])) if A['standardBoost'][iMMN,1][i] < Nperpop], 'b.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len([1 for i in range(0,len(A['standardBoost'][iMMN,0])) if A['standardBoost'][iMMN,1][i] < Nperpop]))
except:
print('standardBoost population not plotted')
try:
axs[3,iiMMN].plot([A['deviant'][iMMN,0][i] for i in range(0,len(A['deviant'][iMMN,0])) if A['deviant'][iMMN,1][i] < Nperpop], [A['deviant'][iMMN,1][i]+Nperpop*0 for i in range(0,len(A['deviant'][iMMN,0])) if A['deviant'][iMMN,1][i] < Nperpop], 'b.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len([1 for i in range(0,len(A['deviant'][iMMN,0])) if A['deviant'][iMMN,1][i] < Nperpop]))
axs[4,iiMMN].plot([A['deviant'][iMMN,0][i] for i in range(0,len(A['deviant'][iMMN,0])) if A['deviant'][iMMN,1][i] >= Nperpop], [A['deviant'][iMMN,1][i]-Nperpop+Nperpop*0 for i in range(0,len(A['deviant'][iMMN,0])) if A['deviant'][iMMN,1][i] >= Nperpop], 'b.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len([1 for i in range(0,len(A['deviant'][iMMN,0])) if A['deviant'][iMMN,1][i] >= Nperpop]))
except:
print('deviant population not plotted')
try:
axs[7,iiMMN].plot([A['deviantBoost'][iMMN,0][i] for i in range(0,len(A['deviantBoost'][iMMN,0])) if A['deviantBoost'][iMMN,1][i] < Nperpop], [A['deviantBoost'][iMMN,1][i]+Nperpop*0 for i in range(0,len(A['deviantBoost'][iMMN,0])) if A['deviantBoost'][iMMN,1][i] < Nperpop], 'b.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len([1 for i in range(0,len(A['deviantBoost'][iMMN,0])) if A['deviantBoost'][iMMN,1][i] < Nperpop]))
except:
print('deviantBoost population not plotted')
try:
axs[5,iiMMN].plot(A['pacemaker'][iMMN,0], A['pacemaker'][iMMN,1]+Nperpop*0, 'r.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len(A['pacemaker'][iMMN,0]))
except:
print('pacemaker population not plotted')
try:
axs[8,iiMMN].plot(A['pacemaker2'][iMMN,0], A['pacemaker2'][iMMN,1]+Nperpop*0, 'r.', lw=0.35, ms=0.35, mew=0.35, color=col)
plotteds_this.append(len(A['pacemaker2'][iMMN,0]))
except:
print('pacemaker2 population not plotted')
print("Nspikes = "+str(plotteds_this))
standard_xs = [[0+x,400+x,400+x,450+x,450+x,500+x,500+x] for x in [0,500,1000,1500,2000,2500,3000]]
for iMMN in range(0,4):
st_on = [1,1,1,1,0,1,1] if iMMN < 2 else ([1,1,1,1,2,1,1] if iMMN == 2 else [2,2,2,2,1,2,2])
dev_on = [0,0,0,0,1,0,0] if iMMN == 0 else [0,0,0,0,0,0,0]
standard_ys = [[0,0,1*(x>1),1*(x>1),1*(x>0),1*(x>0),0] for x in st_on]
deviant_ys = [[0,0,1*(x>1),1*(x>1),1*(x>0),1*(x>0),0] for x in dev_on]
standard_xs_this = [x for y in standard_xs for x in y]+[3800]
standard_ys_this = [x for y in standard_ys for x in y]+[0]
deviant_ys_this = [x for y in deviant_ys for x in y]+[0]
axarr[iMMN].plot(standard_xs_this,[2*y+54 for y in standard_ys_this],'k-',lw=0.3,clip_on=False)
axarr[iMMN].plot(standard_xs_this,[2*y+50 for y in deviant_ys_this],'k-',lw=0.3,clip_on=False)
pos = axarr[0].get_position()
fig1.text(pos.x0 - 0.0, pos.y1 + 0.03, 'B', fontsize=11)
fig1.savefig('fig_onesim.pdf')