#cp ../haymod3e/runcontrol_check.py runcontrol.py
# runcontrols
# A script for determining the control neuron F-I curve and limit cycle.
#
# The input code for the hoc-interface is based on BAC_firing.hoc by Etay Hay (2011)
#
# Tuomo Maki-Marttunen, Oct 2014
# (CC BY)

from neuron import h
import mytools
import pickle
import numpy as np
import sys

spikfreqsAll = []
timescAll = []
VsomacAll = []
VDerivcAll = []
VDcoeffAll = []
VdendcAll = []
VdDcoeffAll = []
VdDerivcAll = []
CasomacAll = []
CaDerivcAll = []
CaDcoeffAll = []
CadendcAll = []
CadDerivcAll = []
CadDcoeffAll = []
times_controlAll = []
Vsoma_controlAll = []
Vdend_controlAll = []
Casoma_controlAll = []
Cadend_controlAll = []

Ihmod = 0.0
if len(sys.argv) > 1:
  Ihmod = float(sys.argv[1])

for icell in range(0,1):
  morphology_file = "morphologies/cell"+str(icell+1)+".asc"
  biophys_file = "models/L5PCbiophys3.hoc"
  template_file = "models/L5PCtemplate.hoc"
  v0 = -80
  ca0 = 0.0001

  proximalpoint = 400
  distalpoint = 620
  BACdt = 5.0

  h("""
load_file("stdlib.hoc")
load_file("stdrun.hoc")
objref cvode
cvode = new CVode()
cvode.active(1)
cvode.atol(0.0002)
load_file("import3d.hoc")
objref L5PC
load_file(\""""+biophys_file+"""\")
load_file(\""""+template_file+"""\")
L5PC = new L5PCtemplate(\""""+morphology_file+"""\")
access L5PC.soma
objref st1
st1 = new IClamp(0.5)
L5PC.soma st1

objref vsoma, vdend, recSite, vdend2, isoma, cadend, cadend2, casoma
vsoma = new Vector()
casoma = new Vector()
vdend = new Vector()
cadend = new Vector()
vdend2 = new Vector()
cadend2 = new Vector()
objref sl,ns,tvec
tvec = new Vector()
sl = new List()
double siteVec[2]
sl = L5PC.locateSites("apic","""+str(distalpoint)+""")
maxdiam = 0
for(i=0;i<sl.count();i+=1){
  dd1 = sl.o[i].x[1]
  dd = L5PC.apic[sl.o[i].x[0]].diam(dd1)
  if (dd > maxdiam) {
    j = i
    maxdiam = dd
  }
}
siteVec[0] = sl.o[j].x[0]
siteVec[1] = sl.o[j].x[1]
print "distalpoint gCa_HVA: ", L5PC.apic[siteVec[0]].gCa_HVAbar_Ca_HVA
print "distalpoint gCa_LVA: ", L5PC.apic[siteVec[0]].gCa_LVAstbar_Ca_LVAst
L5PC.apic[siteVec[0]] cvode.record(&v(siteVec[1]),vdend,tvec)
L5PC.apic[siteVec[0]] cvode.record(&cai(siteVec[1]),cadend,tvec)
L5PC.soma cvode.record(&v(0.5),vsoma,tvec)
L5PC.soma cvode.record(&cai(0.5),casoma,tvec)
""")

  #Block or amplify Ih channels:
  h("""forall if(ismembrane("Ih")) { offma_Ih = offma_Ih + """+str(Ihmod)+""" } """)

  Is = [0.1*x for x in range(0,16)]
  spikfreqs = len(Is)*[0]
  Is_this = [0.0,1.0, 0.5]
  Niter = 15
  Vmaxs_tested = []
  Vmaxdends_tested = []
  Is_tested = []
  for iI in range(0,Niter):
    squareAmp = Is_this[min(iI,2)]
    squareDur = 15800
    tstop = 16000
    h("""
tstop = """+str(tstop)+"""
v_init = """+str(v0)+"""
cai0_ca_ion = """+str(ca0)+"""
st1.amp = """+str(squareAmp)+"""
st1.dur = """+str(squareDur)+"""
st1.del = 10200
""")
    h.init()
    h.run()

    times=np.array(h.tvec)
    Vsoma=np.array(h.vsoma)
    Vdend=np.array(h.vdend)
    Casoma=np.array(h.casoma)
    Cadend=np.array(h.cadend)
    spikes = mytools.spike_times(times,Vsoma,-35,100)
    if iI < 2:
      continue
    if len(spikes) > 0:
      Is_this = [Is_this[0], Is_this[2], (Is_this[0]+Is_this[2])/2]
    else:
      Is_this = [Is_this[2], Is_this[1], (Is_this[2]+Is_this[1])/2]

    Vmaxs_tested.append(max(Vsoma))
    Vmaxdends_tested.append(max(Vdend))
    Is_tested.append(Is_this[min(iI,2)])

    
picklelist = [Is_tested,Vmaxs_tested,Vmaxdends_tested]
file = open('fI_wait_Ihmod'+str(Ihmod)+'_thresh.sav', 'wb')
pickle.dump(picklelist,file)
file.close()