from neuron import h
import matplotlib
matplotlib.use('Agg')
import numpy
from pylab import *
import mytools
import pickle
import time
import sys
import random
v0 = -80
ca0 = 0.0001
BACdt = 5.0
fs = 8
tstop = 13000.0
icell = 0
h("""
load_file("stdlib.hoc")
load_file("stdrun.hoc")
objref cvode
cvode = new CVode()
cvode.active(1)
cvode.atol(0.00005)
load_file("import3d.hoc")
objref L5PC
load_file(\"models/L5PCbiophys3.hoc\")
load_file(\"models/L5PCtemplate.hoc\")
L5PC = new L5PCtemplate(\"morphologies/cell1.asc\")
access L5PC.soma
""")
close("all")
f,axarr = subplots(1,1)
plotteds = []
dists = []
mynums0 = []
mynums1 = []
for itree in range(0,3):
if itree == 0:
nsec = len(h.L5PC.dend)
elif itree == 1:
nsec = len(h.L5PC.apic)
else:
nsec = 1
for j in range(nsec-1,-1,-1):
if itree == 0:
h("access L5PC.dend["+str(j)+"]")
elif itree == 1:
h("access L5PC.apic["+str(j)+"]")
else:
h("access L5PC.soma")
h("tmpvarx = x3d(0)")
h("tmpvary = y3d(0)")
h("tmpvarz = z3d(0)")
h("tmpvarx2 = x3d(n3d()-1)")
h("tmpvary2 = y3d(n3d()-1)")
h("tmpvarz2 = z3d(n3d()-1)")
coord1 = [h.tmpvarx,h.tmpvary,h.tmpvarz]
coord2 = [h.tmpvarx2,h.tmpvary2,h.tmpvarz2]
#for j in range(0,nrecsperseg):
thisdist = h.distance(0.5)
dists.append(h.distance(0.5))
col = "#000000"
if itree == 0:
mynum = int(thisdist/25)
mychr = hex(15-mynum)[2]
mychr2 = hex(mynum)[2]
if mynum>15:
print("HEP")
col = "#"+'ff'+mychr2+mychr2+'00'
#col = "#"+mychr+mychr+mychr2+mychr2+mychr2+mychr2
mynums0.append(mynum)
elif itree == 1:
mynum = int(thisdist/100)
mychr = hex(mynum)[2]
mychr2 = hex(15-mynum)[2]
if mynum>15:
print("HEP")
col = "#00"+mychr2+mychr2+"ff"
mynums1.append(mynum)
elif itree == 2:
col = "#000000"
## Too sparse. Try the below instead
#axarr.plot([coord1[0],coord2[0]],[coord1[1],coord2[1]],'k-',linewidth=h.mydiam,color=col)
h("""
myn = n3d()
myx0 = x3d(0)
myy0 = y3d(0)
myz0 = z3d(0)
""")
oldcoord = [h.myx0, h.myy0, h.myz0]
for k in range(1,int(h.myn)):
h("""
myx0 = x3d("""+str(k)+""")
myy0 = y3d("""+str(k)+""")
myz0 = z3d("""+str(k)+""")
mydiam = diam""")
#if itree == 2:
# h("mydiam = mydiam/5")
#axarr.plot([oldcoord[0],h.myx0],[oldcoord[1],h.myy0],'k-',linewidth=h.mydiam*0.67,color=col)
axarr.plot([oldcoord[0],h.myx0],[oldcoord[1],h.myy0],'k-',linewidth=h.mydiam*0.25,color=col)
plotteds.append([[oldcoord[0],h.myx0],[oldcoord[1],h.myy0],'k-',h.mydiam*0.25,col])
oldcoord = [h.myx0, h.myy0, h.myz0]
axis("equal")
f.savefig("morph_multicolor.eps")
file = open('morph_multicolor.sav', 'wb')
pickle.dump(plotteds,file)
file.close()
print(str(max(mynums0)))
print(str(max(mynums1)))