<?xml version="1.0" encoding="UTF-8" standalone="no"?> <!DOCTYPE properties SYSTEM "http://java.sun.com/dtd/properties.dtd"> <properties> <comment>This is a summary of the simulation parameters to assist reviewing of saved simulations in neuroConstruct.</comment> <entry key="Cell Mechanisms on Cell5">[KA_ChannelML (4.0E-8) on: [axon_hillock, dendrite_group, soma_group], NaxSH10_ChannelML (4.0E-6) on: [axon_hillock], Kdr_ChannelML (1.0E-9) on: [all], NaxSH10_ChannelML (4.0E-7) on: [soma_group, dendrite_group], LeakConductance (1.0E-8) on: [axon_nonhillock], LeakConductance (1.45621E-9) on: [soma_group, dendrite_group, axon_hillock], LCa3_mit_usb_ChannelML (4.0E-8) on: [soma_group], LCa3_mit_usb_ChannelML (2.2E-8) on: [apical_dendrite], LCa3_mit_usb_ChannelML (4.0E-9) on: [proximal_lateral_dendrites], KCa3_ChannelML_new (8.87E-8) on: [axon_group], LCa3_mit_usb_ChannelML (2.0E-8) on: [axon_group], NaxSH0_ChannelML (4.0E-6) on: [axon_nonhillock], Ca_mit_conc_ChannelML (5.2E-6) on: [soma_group, axon_group], KCa3_ChannelML_new (1.42E-7) on: [soma_group], KA_ChannelML (4.0E-7) on: [axon_nonhillock], LCa3_mit_usb_ChannelML (9.5E-8) on: [apical_tuft], AMPA on: [apical_tuft], Glu on: [apical_tuft], Gap_Junction_simple on: [apical_tuft]]</entry> <entry key="Cell Mechanisms on Cell4">[LCa3_mit_usb_ChannelML (4.0E-9) on: [proximal_lateral_dendrites], NaxSH10_ChannelML (4.0E-7) on: [all], LCa3_mit_usb_ChannelML (4.0E-8) on: [soma_group], LCa3_mit_usb_ChannelML (2.2E-8) on: [apical_dendrite], LCa3_mit_usb_ChannelML (9.5E-8) on: [apical_tuft], Ca_mit_conc_ChannelML (5.2E-6) on: [soma_group], LeakConductance (2.55447E-9) on: [all], Kdr_ChannelML (1.0E-9) on: [all], KA_ChannelML (4.0E-8) on: [all], KCa3_ChannelML_new (1.42E-7) on: [soma_group], AMPA on: [apical_tuft], Glu on: [apical_tuft], Gap_Junction_simple on: [apical_tuft]]</entry> <entry key="Cell Mechanisms on Cell3">[KCa3_ChannelML_new (1.42E-7) on: [soma_group], LeakConductance (4.34537E-9) on: [dendrite_group, Axon_hillock_group, soma_group], NaxSH0_ChannelML (4.0E-6) on: [Axon_non_hillock_group], KA_ChannelML (4.0E-7) on: [Axon_non_hillock_group], LCa3_mit_usb_ChannelML (2.0E-8) on: [axon_group], LeakConductance (1.0E-8) on: [Axon_non_hillock_group], Ca_mit_conc_ChannelML (5.2E-6) on: [soma_group, axon_group], KCa3_ChannelML_new (8.87E-8) on: [axon_group], KA_ChannelML (4.0E-8) on: [dendrite_group, Axon_hillock_group, soma_group], NaxSH10_ChannelML (4.0E-6) on: [Axon_hillock_group], LCa3_mit_usb_ChannelML (4.0E-9) on: [proximal_lateral_dendrites], LCa3_mit_usb_ChannelML (2.2E-8) on: [apical_dendrite], LCa3_mit_usb_ChannelML (4.0E-8) on: [soma_group], NaxSH10_ChannelML (4.0E-7) on: [dendrite_group, soma_group], LCa3_mit_usb_ChannelML (9.5E-8) on: [apical_tuft], Kdr_ChannelML (1.0E-9) on: [all], AMPA on: [apical_tuft], Glu on: [apical_tuft], Gap_Junction_simple on: [apical_tuft]]</entry> <entry key="Cell Mechanisms on Cell2">[LCa3_mit_usb_ChannelML (2.0E-8) on: [axon_group], NaxSH10_ChannelML (4.0E-6) on: [axon_hillock], LeakConductance (2.439083E-9) on: [soma_group, axon_hillock, dendrite_group], LeakConductance (1.0E-8) on: [axon_non_hillock], Kdr_ChannelML (1.0E-9) on: [all], LCa3_mit_usb_ChannelML (2.2E-8) on: [Apical_Dendrite], KA_ChannelML (4.0E-8) on: [soma_group, dendrite_group, axon_hillock], NaxSH0_ChannelML (4.0E-6) on: [axon_non_hillock], KA_ChannelML (4.0E-7) on: [axon_non_hillock], LCa3_mit_usb_ChannelML (4.0E-8) on: [soma_group], NaxSH10_ChannelML (4.0E-7) on: [dendrite_group, soma_group], LCa3_mit_usb_ChannelML (9.5E-8) on: [Apical_Tuft], LCa3_mit_usb_ChannelML (4.0E-9) on: [Proximal_Lateral_Dendrites], KCa3_ChannelML_new (8.87E-8) on: [axon_group], KCa3_ChannelML_new (1.42E-7) on: [soma_group], Ca_mit_conc_ChannelML (5.2E-6) on: [soma_group, axon_group], AMPA on: [Apical_Tuft], Glu on: [Apical_Tuft], Gap_Junction_simple on: [Apical_Tuft]]</entry> <entry key="Cell Mechanisms on Cell1">[NaxSH0_ChannelML (4.0E-6) on: [axon_non_hillock], LCa3_mit_usb_ChannelML (4.0E-9) on: [proximal_lateral_dendrites], LCa3_mit_usb_ChannelML (2.0E-8) on: [axon_hillock], LeakConductance (7.83821E-9) on: [dendrite_group, axon_hillock, soma_group], KA_ChannelML (4.0E-7) on: [axon_non_hillock], LCa3_mit_usb_ChannelML (4.0E-8) on: [soma_group], KA_ChannelML (4.0E-8) on: [dendrite_group, axon_hillock, soma_group], Kdr_ChannelML (1.0E-9) on: [all], LCa3_mit_usb_ChannelML (9.5E-8) on: [apical_tuft], NaxSH10_ChannelML (4.0E-6) on: [axon_hillock], LeakConductance (1.0E-8) on: [axon_non_hillock], NaxSH10_ChannelML (4.0E-7) on: [soma_group, dendrite_group], Ca_mit_conc_ChannelML (5.2E-6) on: [soma_group, axon_group], KCa3_ChannelML_new (1.42E-7) on: [soma_group], LCa3_mit_usb_ChannelML (2.2E-8) on: [apical_dendrite], KCa3_ChannelML_new (8.87E-8) on: [axon_group], AMPA on: [apical_tuft], Glu on: [apical_tuft], Gap_Junction_simple on: [apical_tuft]]</entry> <entry key="dt">0.025</entry> <entry key="Simulation temp">35.0</entry> <entry key="Morph summary Cell6">Segs:1161_Secs:38_IntDivs:170</entry> <entry key="Morph summary Cell5">Segs:2018_Secs:72_IntDivs:296</entry> <entry key="Morph summary Cell4">Segs:1072_Secs:49_IntDivs:144</entry> <entry key="Morph summary Cell3">Segs:1740_Secs:132_IntDivs:249</entry> <entry key="Morph summary Cell2">Segs:2417_Secs:118_IntDivs:334</entry> <entry key="Morph summary Cell1">Segs:839_Secs:55_IntDivs:308</entry> <entry key="Num integration method">Fixed time step</entry> <entry key="Stimulation: 1">IClamp: [del: 10.0, dur: 990.0, amp: 1.6, repeats: false] on CellGroup_2</entry> <entry key="Stimulation: 0">IClamp: [del: 0.0, dur: 1000.0, amp: 1.6, repeats: false] on CellGroup_1</entry> <entry key="Script format">Hoc</entry> <entry key="Populations">CellGroup_1 (Cell2): 1; CellGroup_2 (Cell3): 1; CellGroup_3 (Cell1): 1; CellGroup_4 (Cell4): 1; CellGroup_5 (Cell5): 1; CellGroup_6 (Cell6): 1</entry> <entry key="Net Conn: 14">NetConn_CellGroup_6_CellGroup_5: CellGroup_6 -> CellGroup_5 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 54.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="neuroConstruct random seed">-520664829</entry> <entry key="Net Conn: 13">NetConn_CellGroup_6_CellGroup_4: CellGroup_6 -> CellGroup_4 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 40.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Parallel configuration">Local machine, serial mode with 1 host, 1 processor </entry> <entry key="Net Conn: 12">NetConn_CellGroup_3_CellGroup_6: CellGroup_3 -> CellGroup_6 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 25.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Net Conn: 11">NetConn_CellGroup_2_CellGroup_6: CellGroup_2 -> CellGroup_6 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 45.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Global Cm">1.0E-8</entry> <entry key="Net Conn: 10">NetConn_CellGroup_6_CellGroup_1: CellGroup_6 -> CellGroup_1 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 24.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Simulator">NEURON</entry> <entry key="Net Conn: 9">NetConn_CellGroup_5_CellGroup_4: CellGroup_5 -> CellGroup_4 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 15.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Net Conn: 8">NetConn_CellGroup_3_CellGroup_5: CellGroup_3 -> CellGroup_5 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 34.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="GUI Mode">ALL_SHOW</entry> <entry key="Net Conn: 7">NetConn_CellGroup_5_CellGroup_2: CellGroup_5 -> CellGroup_2 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 15.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Global Rm">3.33333344E8</entry> <entry key="Net Conn: 6">NetConn_CellGroup_1_CellGroup_5: CellGroup_1 -> CellGroup_5 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 55.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Net Conn: 5">NetConn_CellGroup_4_CellGroup_3: CellGroup_4 -> CellGroup_3 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 28.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Sim Config">Default Simulation Configuration (CellGroup_2, CellGroup_1, CellGroup_6, CellGroup_5, CellGroup_4, CellGroup_3, NetConn_CellGroup_6_CellGroup_1, NetConn_CellGroup_2_CellGroup_6, NetConn_CellGroup_4_CellGroup_3, NetConn_CellGroup_2_CellGroup_4, NetConn_CellGroup_2_CellGroup_3, NetConn_CellGroup_4_CellGroup_1, NetConn_CellGroup_3_CellGroup_6, NetConn_CellGroup_5_CellGroup_4, NetConn_CellGroup_3_CellGroup_5, NetConn_CellGroup_1_CellGroup_5, NetConn_CellGroup_5_CellGroup_2, NetConn_CellGroup_6_CellGroup_5, NetConn_CellGroup_1_CellGroup_2, NetConn_CellGroup_3_CellGroup_1, NetConn_CellGroup_6_CellGroup_4, Input_1, Input_0, CellGroup_1_v, CellGroup_6_v, CellGroup_3_v, CellGroup_5_v, CellGroup_2_v, CellGroup_4_v)</entry> <entry key="Unit system">NEURON Units</entry> <entry key="Net Conn: 4">NetConn_CellGroup_4_CellGroup_1: CellGroup_4 -> CellGroup_1 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 25.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Net Conn: 3">NetConn_CellGroup_2_CellGroup_4: CellGroup_2 -> CellGroup_4 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 41.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Net Conn: 2">NetConn_CellGroup_3_CellGroup_1: CellGroup_3 -> CellGroup_1 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 20.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Net Conn: 1">NetConn_CellGroup_2_CellGroup_3: CellGroup_2 -> CellGroup_3 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 35.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="NEURON random seed">1490934605</entry> <entry key="Net Conn: 0">NetConn_CellGroup_1_CellGroup_2: CellGroup_1 -> CellGroup_2 (Gap_Junction_simple [thresh: -20.0, delay: 5.0, weight: 1.0]), Random, Close (Num to search: 2000), Gen Src->Tgt, 100.0 per Src, max: MAX per Tgt, Pre: dends Post: dends , Max: 27.0, min: 0.0, dim: r (num attempts: 2000), APSpeed: 3.4028235E38</entry> <entry key="Global Ra">300.0</entry> <entry key="Script generation time">12.59</entry> <entry key="neuroConstruct version">1.3.8</entry> <entry key="Cell Mechanisms on Cell6">[LCa3_mit_usb_ChannelML (2.0E-8) on: [axon_group], LCa3_mit_usb_ChannelML (9.5E-8) on: [apical_tuft], Kdr_ChannelML (1.0E-9) on: [all], LCa3_mit_usb_ChannelML (4.0E-8) on: [soma_group], NaxSH10_ChannelML (4.0E-7) on: [dendrite_group, soma_group], NaxSH10_ChannelML (4.0E-6) on: [axon_hillock], LeakConductance (1.0E-8) on: [axon_nonhillock], KA_ChannelML (4.0E-8) on: [axon_hillock, soma_group, dendrite_group], LCa3_mit_usb_ChannelML (2.2E-8) on: [apical_dendrite], LeakConductance (3.5422E-9) on: [soma_group, dendrite_group, axon_hillock], LCa3_mit_usb_ChannelML (4.0E-9) on: [proximal_lateral_dendrites], KA_ChannelML (4.0E-7) on: [axon_nonhillock], Ca_mit_conc_ChannelML (5.2E-6) on: [soma_group, axon_group], KCa3_ChannelML_new (8.87E-8) on: [axon_group], NaxSH0_ChannelML (4.0E-6) on: [axon_nonhillock], KCa3_ChannelML_new (1.42E-7) on: [soma_group], AMPA on: [apical_tuft], Glu on: [apical_tuft], Gap_Junction_simple on: [apical_tuft]]</entry> <entry key="Duration">100.0</entry> </properties>