#!/usr/bin/env python
import sys
import math
# The PYTHONPATH should contain the location of moose.py and _moose.so
# files. Putting ".." with the assumption that moose.py and _moose.so
# has been generated in ${MOOSE_SOURCE_DIRECTORY}/pymoose/ (as default
# pymoose build does) and this file is located in
# ${MOOSE_SOURCE_DIRECTORY}/pymoose/examples
# sys.path.append('..\..')
try:
import moose
except ImportError:
print "ERROR: Could not import moose. Please add the directory containing moose.py in your PYTHONPATH"
import sys
sys.exit(1)
from channelConstants import *
VKM = -70.0e-3 # Volts
gransarea = 5e-9 # m^2 default surface area of soma from granule.tem
GKM = 1334*gransarea # Siemens
def calc_KM_taux(v):
return 1/( 3.3*math.exp((v+35.0e-3)/40.0e-3) + math.exp(-(v+35.0e-3)/20.0e-3) ) # seconds
def calc_KM_xinf(v):
return 1/(1+math.exp(-(35.0e-3+v)/5.0e-3))
class KMChannel(moose.HHChannel):
"""K muscarinic channel inherits from HHChannel."""
def __init__(self, *args):
"""Setup the KM channel with defaults"""
moose.HHChannel.__init__(self,*args)
self.Ek = VKM
self.Gbar = GKM
self.addField('ion')
self.setField('ion','K')
self.Xpower = 1 # This will create HHGate instance xGate inside the Na channel
#self.Ypower = 0 # This will create HHGate instance yGate inside the Na channel
## Below gate gets created after Xpower or Ypower are set to nonzero values
## I don't anymore have to explicitly create this attribute in the class
#self.xGate = moose.HHGate(self.path + "/xGate")
self.xGate.A.xmin = VMIN
self.xGate.A.xmax = VMAX
self.xGate.A.xdivs = NDIVS
self.xGate.B.xmin = VMIN
self.xGate.B.xmax = VMAX
self.xGate.B.xdivs = NDIVS
v = VMIN
for i in range(NDIVS+1):
taux = calc_KM_taux(v)
self.xGate.A[i] = calc_KM_xinf(v)/taux
self.xGate.B[i] = 1/taux
v = v + dv