# -*- coding: utf-8 -*- # ALL SI UNITS # milliMolar is same as mol/m^3 # These are the simulation parameters for testing recurrent and lateral inhibition on mitrals via granules # Only 2 gloms, 2 mitral sisters per glom. from pylab import * rc('path',simplify= False) # To ensure matplotlib connects points at expense of speed. SIMDT = 5e-5 # seconds ## Correction factor for event-based vs graded synchans ## In event-based case, activation = weight/simdt while in graded case activation is used directly. ## Further, due to every sim point in graded case acting like an event, moose gives a convolved Gk which is much larger (say 1000 times) than the event based one. ## So I should correct for simdt and the activation weighted multiple events at every simdt. #synchan_activation_correction = 1/SIMDT / 1000 # for SIMDT=1e-5 synchan_activation_correction = 1/SIMDT / 250 # for SIMDT=5e-5 PLOTDT = 5e-5 # seconds # add SETTLETIME from stimuliConstants.py to the REALRUNTIME to get the simulation RUNTIME REALRUNTIME = 1.0 # seconds - for active inhibition - stimulus only for 500ms VOLTAGE_CLAMP = False NUMBINS = 10 ###### Somehow mpiexec doesn't like number of processes > 1000 and gives errors somewhere in the middle of the run while trying to send to the boss, after which boss decides the below: ## rank 0 in job 35 gulabjamun.ncbs.res.in_56625 caused collective abort of all ranks ############ So ensure that NUMAVG+1 < 1000 ####### For a network rather than isolated mitral cell, even 500 processes make the cluster hang. Has worked only for 32 processes, didn't test inbetween yet. ##### Basically memory overflow problems - use less memory by using less data tables NUMAVG = 8 # don't make NUMAVG higher than 200. OBNet_file = '../netfiles/syn_conn_array_10000_singlesclubbed100_jointsclubbed3.xml' NO_SINGLES = False NO_JOINTS = False NO_MULTIS = True NO_PGS = False IN_VIVO = True CLUB_MITRALS = True#False # If unmodeled mitrals connect to same granule as modeled mitrals, provide extra excitation to granule from modeled mitral ONLY_TWO_MITS = False # Only two mitrals with below indices (neuroml id-s) to test lateral inhibition. ODOR_GIVEN = True