<?xml version="1.0" encoding="ISO-8859-1"?> <neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Ca_LVAst"> <notes>NeuroML file containing a single Channel description</notes> <ionChannel id="Ca_LVAst" conductance="10pS" type="ionChannelHH" species="ca"> <notes>Low voltage activated Ca2+ current Comment from original mod file: Note: mtau is an approximation from the plots :Reference : : Avery and Johnston 1996, tau from Randall 1997 :Comment: shifted by -10 mv to correct for junction potential :Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21</notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="Ca_LVAst"> <bqmodel:isDescribedBy xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Bag> <rdf:li>Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties, Etay Hay, Sean Hill, Felix Schürmann, Henry Markram and Idan Segev, PLoS Comp Biol 2011</rdf:li> <rdf:li rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/21829333"/> </rdf:Bag> </bqmodel:isDescribedBy> <bqbiol:isVersionOf xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Bag> <rdf:li>Ca channels</rdf:li> <rdf:li rdf:resource="http://senselab.med.yale.edu/neurondb/channelGene2.aspx#table1"/> </rdf:Bag> </bqbiol:isVersionOf> </rdf:Description> </rdf:RDF> </annotation> <gate id="m" type="gateHHtauInf" instances="2"> <q10Settings type="q10Fixed" fixedQ10="2.95288264"/> <timeCourse type="Ca_LVAst_m_tau_tau"/> <steadyState type="HHSigmoidVariable" rate="1" scale="6mV" midpoint="-40mV"/> </gate> <gate id="h" type="gateHHtauInf" instances="1"> <q10Settings type="q10Fixed" fixedQ10="2.95288264"/> <timeCourse type="Ca_LVAst_h_tau_tau"/> <steadyState type="HHSigmoidVariable" rate="1" scale="-6.4mV" midpoint="-90mV"/> </gate> </ionChannel> <ComponentType name="Ca_LVAst_m_tau_tau" extends="baseVoltageDepTime"> <Constant name="TIME_SCALE" dimension="time" value="1 ms"/> <Constant name="VOLT_SCALE" dimension="voltage" value="1 mV"/> <Dynamics> <DerivedVariable name="V" dimension="none" value="v / VOLT_SCALE"/> <DerivedVariable name="t" exposure="t" dimension="time" value="(5 + 20 / (1 + (exp ((V+35)/5) ))) * TIME_SCALE"/> </Dynamics> </ComponentType> <ComponentType name="Ca_LVAst_h_tau_tau" extends="baseVoltageDepTime"> <Constant name="TIME_SCALE" dimension="time" value="1 ms"/> <Constant name="VOLT_SCALE" dimension="voltage" value="1 mV"/> <Dynamics> <DerivedVariable name="V" dimension="none" value="v / VOLT_SCALE"/> <DerivedVariable name="t" exposure="t" dimension="time" value="(20 + 50 / (1 + (exp ((V+50)/7) ))) * TIME_SCALE"/> </Dynamics> </ComponentType> </neuroml>