<?xml version="1.0" encoding="UTF-8"?>
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="Soma_AllCML">
<include href="Ca_HVA.channel.nml"/>
<include href="Ca_LVAst.channel.nml"/>
<include href="CaDynamics_E2_NML2_soma.nml"/>
<include href="CaDynamics_E2_NML2_apicTrunk.nml"/>
<include href="CaDynamics_E2_NML2.apicTuft.nml"/>
<include href="Ih.channel.nml"/>
<include href="Im.channel.nml"/>
<include href="K_Pst.channel.nml"/>
<include href="K_Tst.channel.nml"/>
<include href="Nap_Et2.channel.nml"/>
<include href="NaTa_t.channel.nml"/>
<include href="pas.channel.nml"/>
<include href="SK_E2.channel.nml"/>
<include href="SKv3_1.channel.nml"/>
<cell id="Soma_AllCML">
<notes>A single segment/compartment cell</notes>
<morphology id="morphology_Soma_AllCML">
<segment id="0" name="Soma">
<proximal x="0.0" y="0.0" z="0.0" diameter="14.6852"/>
<distal x="0.0" y="24.5235" z="0.0" diameter="14.6852"/>
</segment>
<segment id="1" name="Trunk">
<parent segment="0"/>
<proximal x="0.0" y="24.5235" z="0.0" diameter="10.6175"/>
<distal x="0.0" y="424.2985" z="0.0" diameter="10.6175"/>
</segment>
<segment id="2" name="Tuft">
<parent segment="1"/>
<proximal x="0.0" y="424.5235" z="0.0" diameter="3.47888"/>
<distal x="0.0" y="1126.4925" z="0.0" diameter="3.47888"/>
</segment>
<segment id="3" name="Dend">
<parent segment="0" fractionAlong="0.0"/>
<proximal x="0.0" y="0.0" z="0.0" diameter="6.62433"/>
<distal x="0.0" y="-425.88" z="0.0" diameter="6.62433"/>
</segment>
<segmentGroup id="Soma" neuroLexId="sao864921383"> <!--
This group contains an unbranched set of segments, and all of the segmentGroups marked with
neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
These segmentGroups correspond to the 'cables' of NeuroML v1.8.1. -->
<annotation>
<property tag="numberInternalDivisions" value="5"/>
</annotation>
<member segment="0"/>
</segmentGroup>
<segmentGroup id="Trunk" neuroLexId="sao864921383"> <!--
This group contains an unbranched set of segments, and all of the segmentGroups marked with
neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
These segmentGroups correspond to the 'cables' of NeuroML v1.8.1. -->
<annotation>
<property tag="numberInternalDivisions" value="5"/>
</annotation>
<member segment="1"/>
</segmentGroup>
<segmentGroup id="Tuft" neuroLexId="sao864921383"> <!--
This group contains an unbranched set of segments, and all of the segmentGroups marked with
neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
These segmentGroups correspond to the 'cables' of NeuroML v1.8.1. -->
<annotation>
<property tag="numberInternalDivisions" value="5"/>
</annotation>
<member segment="2"/>
</segmentGroup>
<segmentGroup id="Dend" neuroLexId="sao864921383"> <!--
This group contains an unbranched set of segments, and all of the segmentGroups marked with
neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
These segmentGroups correspond to the 'cables' of NeuroML v1.8.1. -->
<!--This 'Section' has number of internal divisions (nseg) = 2-->
<annotation>
<property tag="numberInternalDivisions" value="5"/>
</annotation>
<member segment="3"/>
</segmentGroup>
<segmentGroup id="ApicalTrunk">
<include segmentGroup="Trunk"/>
</segmentGroup>
<segmentGroup id="ApicalTuft">
<include segmentGroup="Tuft"/>
</segmentGroup>
<segmentGroup id="all">
<include segmentGroup="Soma"/>
<include segmentGroup="ApicalTrunk"/>
<include segmentGroup="ApicalTuft"/>
<include segmentGroup="Dend"/>
</segmentGroup>
<segmentGroup id="soma_group" neuroLexId="GO:0043025"> <!--Soma group-->
<include segmentGroup="Soma"/>
</segmentGroup>
<segmentGroup id="dendrite_group" neuroLexId="GO:0030425"> <!--Dendrite group-->
<include segmentGroup="ApicalTrunk"/>
<include segmentGroup="ApicalTuft"/>
<include segmentGroup="Dend"/>
</segmentGroup>
<segmentGroup id="ApicalDend">
<include segmentGroup="ApicalTrunk"/>
<include segmentGroup="ApicalTuft"/>
</segmentGroup>
<segmentGroup id="Basal">
<include segmentGroup="Dend"/>
</segmentGroup>
</morphology>
<biophysicalProperties id="biophys">
<membraneProperties>
<channelDensity condDensity="0.279218 mS_per_cm2" id="Ih_soma_group" ionChannel="Ih" segmentGroup="soma_group" ion="hcn" erev="-40.6682 mV"/>
<channelDensity condDensity="0.2935 mS_per_cm2" id="Ih_Basal" ionChannel="Ih" segmentGroup="Basal" ion="hcn" erev="-40.6682 mV"/>
<channelDensity condDensity="0.0 mS_per_cm2" id="Ih_ApicalTrunk" ionChannel="Ih" segmentGroup="ApicalTrunk" ion="hcn" erev="-40.6682 mV"/>
<channelDensity condDensity="4.92557 mS_per_cm2" id="Ih_ApicalTuft" ionChannel="Ih" segmentGroup="ApicalTuft" ion="hcn" erev="-40.6682 mV"/>
<channelDensity condDensity="0.143416 mS_per_cm2" id="Im_ApicalTrunk" ionChannel="Im" segmentGroup="ApicalTrunk" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="0.112799 mS_per_cm2" id="Im_ApicalTuft" ionChannel="Im" segmentGroup="ApicalTuft" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="0.175889 mS_per_cm2" id="K_Pst_soma_group" ionChannel="K_Pst" segmentGroup="soma_group" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="23.8758 mS_per_cm2" id="K_Tst_soma_group" ionChannel="K_Tst" segmentGroup="soma_group" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="2.06183 mS_per_cm2" id="Nap_Et2_soma_group" ionChannel="Nap_Et2" segmentGroup="soma_group" ion="na" erev="50.0 mV"/>
<channelDensity condDensity="2411.14 mS_per_cm2" id="NaTa_t_soma_group" ionChannel="NaTa_t" segmentGroup="soma_group" ion="na" erev="50.0 mV"/>
<channelDensity condDensity="13.4547 mS_per_cm2" id="NaTa_t_ApicalTrunk" ionChannel="NaTa_t" segmentGroup="ApicalTrunk" ion="na" erev="50.0 mV"/>
<channelDensity condDensity="13.1333 mS_per_cm2" id="NaTa_t_ApicalTuft" ionChannel="NaTa_t" segmentGroup="ApicalTuft" ion="na" erev="50.0 mV"/>
<channelDensity condDensity="0.0437095 mS_per_cm2" id="pas_soma_group" ionChannel="pas" segmentGroup="soma_group" ion="non_specific" erev="-90.0 mV"/>
<channelDensity condDensity="0.0379351 mS_per_cm2" id="pas_Basal" ionChannel="pas" segmentGroup="Basal" ion="non_specific" erev="-90.0 mV"/>
<channelDensity condDensity="0.0529409 mS_per_cm2" id="pas_ApicalTrunk" ionChannel="pas" segmentGroup="ApicalTrunk" ion="non_specific" erev="-90.0 mV"/>
<channelDensity condDensity="0.0683036 mS_per_cm2" id="pas_ApicalTuft" ionChannel="pas" segmentGroup="ApicalTuft" ion="non_specific" erev="-90.0 mV"/>
<channelDensity condDensity="0.230911 mS_per_cm2" id="SK_E2_ApicalTrunk" ionChannel="SK_E2" segmentGroup="ApicalTrunk" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="3.64934 mS_per_cm2" id="SK_E2_ApicalTuft" ionChannel="SK_E2" segmentGroup="ApicalTuft" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="47.8551 mS_per_cm2" id="SK_E2_soma_group" ionChannel="SK_E2" segmentGroup="soma_group" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="1.21434 mS_per_cm2" id="SKv3_1_ApicalTrunk" ionChannel="SKv3_1" segmentGroup="ApicalTrunk" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="0.0 mS_per_cm2" id="SKv3_1_ApicalTuft" ionChannel="SKv3_1" segmentGroup="ApicalTuft" ion="k" erev="-85.0 mV"/>
<channelDensity condDensity="700.652 mS_per_cm2" id="SKv3_1_soma_group" ionChannel="SKv3_1" segmentGroup="soma_group" ion="k" erev="-85.0 mV"/>
<!--Reversal potential for ca in Ca_HVA will be calculated by Nernst equation from internal & external calcium-->
<channelDensityNernst condDensity="0.0 mS_per_cm2" id="Ca_HVA_ApicalTrunk" ionChannel="Ca_HVA" segmentGroup="ApicalTrunk" ion="ca"/>
<channelDensityNernst condDensity="0.977359 mS_per_cm2" id="Ca_HVA_ApicalTuft" ionChannel="Ca_HVA" segmentGroup="ApicalTuft" ion="ca"/>
<channelDensityNernst condDensity="0.838171 mS_per_cm2" id="Ca_HVA_soma_group" ionChannel="Ca_HVA" segmentGroup="soma_group" ion="ca"/>
<!--Reversal potential for ca in Ca_LVAst will be calculated by Nernst equation from internal & external calcium-->
<channelDensityNernst condDensity="0.0 mS_per_cm2" id="Ca_LVAst_ApicalTrunk" ionChannel="Ca_LVAst" segmentGroup="ApicalTrunk" ion="ca"/>
<channelDensityNernst condDensity="0.486888 mS_per_cm2" id="Ca_LVAst_ApicalTuft" ionChannel="Ca_LVAst" segmentGroup="ApicalTuft" ion="ca"/>
<channelDensityNernst condDensity="3.11435 mS_per_cm2" id="Ca_LVAst_soma_group" ionChannel="Ca_LVAst" segmentGroup="soma_group" ion="ca"/>
<spikeThresh value="0 mV"/>
<specificCapacitance segmentGroup="soma_group" value="1.2154 uF_per_cm2"/>
<specificCapacitance segmentGroup="ApicalTrunk" value="1.44542 uF_per_cm2"/>
<specificCapacitance segmentGroup="ApicalTuft" value="2.6039 uF_per_cm2"/>
<specificCapacitance segmentGroup="Basal" value="1.93792 uF_per_cm2"/>
<initMembPotential value="-80.0 mV"/>
</membraneProperties>
<intracellularProperties>
<species segmentGroup="ApicalTrunk" id="ca" ion="ca" concentrationModel="CaDynamics_E2_NML2_apicTrunk" initialConcentration="1.0E-10 mol_per_cm3" initialExtConcentration="2.0E-6 mol_per_cm3"/>
<species segmentGroup="ApicalTuft" id="ca" ion="ca" concentrationModel="CaDynamics_E2_NML2_apicTuft" initialConcentration="1.0E-10 mol_per_cm3" initialExtConcentration="2.0E-6 mol_per_cm3"/>
<species segmentGroup="soma_group" id="ca" ion="ca" concentrationModel="CaDynamics_E2_NML2_soma" initialConcentration="1.0E-10 mol_per_cm3" initialExtConcentration="2.0E-6 mol_per_cm3"/>
<resistivity segmentGroup="soma_group" value="0.379507 kohm_cm"/>
<resistivity segmentGroup="ApicalTrunk" value="0.957826 kohm_cm"/>
<resistivity segmentGroup="ApicalTuft" value="0.224271 kohm_cm"/>
<resistivity segmentGroup="Basal" value="0.197234 kohm_cm"/>
</intracellularProperties>
</biophysicalProperties>
</cell>
</neuroml>