from neuron import h
import matplotlib
matplotlib.use('Agg')
import numpy
from pylab import *
def setparams(params,Nmc):
global dists_apical, dists_basal
keys = params.keys()
lengthChanged = False
for ikey in range(0,len(keys)):
key = keys[ikey]
if key[0:2] == "L_":
lengthChanged = True
underscoreind = key.rfind('_')
section = key[underscoreind+1:len(key)]
if section == "*":
for i in range(0,Nmc):
h("""
i = """+str(i)+"""
if (epnm.gid_exists(i)) {
forsec epnm.pc.gid2cell(i).all """+key[0:underscoreind]+""" = """+str(params[key])+"""
}
""")
h("forall "+key[0:underscoreind]+" = "+str(params[key]))
else:
for i in range(0,Nmc):
h("""
i = """+str(i)+"""
if (epnm.gid_exists(i)) {
epnm.pc.gid2cell(i)."""+section+""" """+key[0:underscoreind]+""" = """+str(params[key])+"""
}
""")
if lengthChanged:
for i in range(0,Nmc):
h("""
i = """+str(i)+"""
if (epnm.gid_exists(i)) {
epnm.pc.gid2cell(i).soma diam = """+str(360.132/params['L_soma'])+"""
epnm.pc.gid2cell(i).dend diam = """+str(2821.168/params['L_dend'])+"""
epnm.pc.gid2cell(i).apic[0] diam = """+str(4244.628/params['L_apic[0]'])+"""
epnm.pc.gid2cell(i).apic[1] diam = """+str(2442.848/params['L_apic[1]'])+"""
lengthA = 0
lengthB = 0
forsec epnm.pc.gid2cell(i).apical {
lengthA = lengthA + L
}
forsec epnm.pc.gid2cell(i).basal {
lengthB = lengthB + L
}
epnm.pc.gid2cell(i).pA = lengthA/(lengthA + lengthB)
}
""")
#No need for dists or dendritic recordings/stimuli?
#dists_apical = []
#dists_basal = []
#for j in range(0,nrecsperseg):
# dists_apical.append(h.distance(xsperseg[j],sec=h.L5PC.apic[0]))
#for j in range(0,nrecsperseg):
# dists_apical.append(h.distance(xsperseg[j],sec=h.L5PC.apic[1]))
#for j in range(0,nrecsperseg):
# dists_basal.append(h.distance(xsperseg[j],sec=h.L5PC.dend))
#if params['L_apic[0]'] > 200:
# for i in range(0,Nmc):
# h("""
#i = """+str(i)+"""
#if (epnm.gid_exists(i)) {
# epnm.pc.gid2cell(i)."""+section+""" """+key[0:underscoreind]+""" = """+str(params[key])+"""
#}
#""")
# h("L5PC.apic[0] st2.loc("+str(200.0/params['L_apic[0]'])+")")
#elif params['L_apic[0]'] + params['L_apic[1]'] > 200:
# h("L5PC.apic[1] st2.loc("+str((200.0-params['L_apic[0]'])/params['L_apic[1]'])+")")
#else:
# h("L5PC.apic[1] st2.loc(1.0)")
#if params['L_apic[0]'] > 620:
# h("L5PC.apic[0] syn1.loc("+str(620.0/params['L_apic[0]'])+")")
# h("L5PC.apic[0] syni.loc("+str(620.0/params['L_apic[0]'])+")")
# h("L5PC.apic[0] cvode.record(&v("+str(620.0/params['L_apic[0]'])+"),vdend,tvec)")
# h("L5PC.apic[0] cvode.record(&cai("+str(620.0/params['L_apic[0]'])+"),cadend,tvec)")
#elif params['L_apic[0]'] + params['L_apic[1]'] > 620:
# h("L5PC.apic[1] syn1.loc("+str((620.0-params['L_apic[0]'])/params['L_apic[1]'])+")")
# h("L5PC.apic[1] syni.loc("+str((620.0-params['L_apic[0]'])/params['L_apic[1]'])+")")
# h("L5PC.apic[1] cvode.record(&v("+str((620.0-params['L_apic[0]'])/params['L_apic[1]'])+"),vdend,tvec)")
# h("L5PC.apic[1] cvode.record(&cai("+str((620.0-params['L_apic[0]'])/params['L_apic[1]'])+"),cadend,tvec)")
#else:
# h("L5PC.apic[1] syn1.loc(1.0)")
# h("L5PC.apic[1] syni.loc(1.0)")
# h("L5PC.apic[1] cvode.record(&v(1.0),vdend,tvec)")
# h("L5PC.apic[1] cvode.record(&cai(1.0),cadend,tvec)")
#if params['L_apic[0]'] > 800:
# h("L5PC.apic[0] cvode.record(&v("+str(800.0/params['L_apic[0]'])+"),vdend2,tvec)")
# h("L5PC.apic[0] cvode.record(&cai("+str(800.0/params['L_apic[0]'])+"),cadend2,tvec)")
#elif params['L_apic[0]'] + params['L_apic[1]'] > 800:
# h("L5PC.apic[1] cvode.record(&v("+str((800.0-params['L_apic[0]'])/params['L_apic[1]'])+"),vdend2,tvec)")
# h("L5PC.apic[1] cvode.record(&cai("+str((800.0-params['L_apic[0]'])/params['L_apic[1]'])+"),cadend2,tvec)")
#else:
# h("L5PC.apic[1] cvode.record(&v(1.0),vdend2,tvec)")
# h("L5PC.apic[1] cvode.record(&cai(1.0),cadend2,tvec)")