/*----------------------------------------------------------------
%W% %G%
ctty238f.asc translated Tue Dec 17 10:30:46 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 9.69964 um length = 19.8068 um area = 603.56 um2
12 three-D points; 13 outline points numbered 26-38
outline diameter = 12.3027 um
2 primary neurites
47 branches totaling 1904.55 um in length, 3870.19 um2 in area
592 tree points translated to 75 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 630
No. trees 4
Text T11238FO, HRP and DAB, 2/20/89
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[1],\
dend2[29]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
/* neurite geometry*/
for i = 0,0 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,28 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,0 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,28 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
12
-7 8 10 0
-6.5 9.75 10 5.5
-5 9.25 10 10.5
-4 8.1786 10 12.357
-1.5 5.9167 10 16.167
-1 4.9375 10 15.875
0.5 2.95 10 13.1
1.5 1.25 10 10.5
2 0.5 10 9
3 -1 10 6
4 -2.5 10 3
4 -4 10 0
NEURITE COORDINATES AND DIAMETERS:
2 6
-3.5 11 -0.5 7.5
-4 12 4.5 7.5
-4.5 13 7.5 7.5
-6 15.5 10 7.5
-6.5 18 12.5 7.5
-7 19 14 7.5
2 4
-0.5 -8 -3.5 2
1 -13 0 2
1.5 -14.5 3.5 2
1.5 -14.5 8.5 2
2 6
1.5 -14.5 8.5 2
-1 -12.5 8.5 0.3
-3.5 -9.5 9.5 0.3
-6 -7 9.5 0.3
-9.5 -4 9.5 0.3
-11 -3.5 10 0.3
4 7
-11 -3.5 10 0.3
-14 -8 8.5 0.1
-12.5 -14.5 9 0.1
-12 -20 10.5 0.1
-13 -29 12 0.1
-15 -36.5 11 0.1
-16.5 -39 14 0.1
3 8
-11 -3.5 10 0.3
-14.5 -4 10.5 0.1
-16.5 -6 10.5 0.1
-19.5 -8 10.5 0.1
-20 -12.5 10 0.1
-20.5 -17.5 10 0.1
-21 -20.5 10.5 0.1
-23.5 -24.5 10.5 0.1
1 5
1.5 -14.5 8.5 2
2.5 -16 8 1.7
1.5 -18.5 8 1.9
1 -20 8.5 1.9
1 -20.5 9.5 1.9
1 3
1 -20.5 9.5 1.9
-1 -23 10 1.6
-2 -25 10.5 1.6
3 8
-2 -25 10.5 1.6
-5 -24.5 10.5 0.5
-8 -24 10.5 0.5
-10.5 -23 11.5 0.5
-13 -21.5 11.5 0.5
-15.5 -21.5 12 0.2
-17.5 -19.5 12.5 0.2
-22.5 -21 12.5 0.1
2 7
-2 -25 10.5 1.6
0 -26.5 10 1.1
-0.5 -28 9.5 1.1
-1 -30.5 9.5 1.1
-1 -32.5 10.5 1.8
-1 -33.5 10.5 1.8
-1 -33.5 12 1.8
1 3
-1 -33.5 12 1.8
-3.5 -35 10.5 1.1
-5.5 -39.5 12.5 1.1
1 4
-5.5 -39.5 12.5 1.1
-8.5 -38.5 11.5 0.1
-12 -40 12 0.1
-13.5 -42 11.5 0.1
9 29
-5.5 -39.5 12.5 1.1
-4.5 -42 12.5 0.9
-4.5 -44 11.5 0.9
-5.5 -46 11.5 0.9
-4.5 -48 10.5 0.9
-4.5 -49.5 10.5 0.9
-5.5 -53 13 0.9
-5.5 -55 12 0.9
-7 -58 12.5 0.9
-7.5 -59.5 13 0.9
-10 -58 13 0.9
-12.5 -57 13.5 0.6
-15.5 -55 14 0.6
-17 -54 14 0.6
-17.5 -52 13 0.6
-20.5 -53.5 14.5 0.6
-22 -58.5 12.5 0.4
-20.5 -62 12.5 0.4
-23 -65.5 12 0.4
-25.5 -68.5 12.5 0.4
-25 -73 9.5 0.4
-28.5 -71.5 7.5 0.4
-31.5 -71 7.5 0.4
-32 -68.5 7 0.2
-35 -69 7 0.2
-37.5 -66 10.5 0.2
-39.5 -66.5 11 0.2
-41.5 -66 10.5 0.2
-41.5 -66 10.5 0.2
2 6
-1 -33.5 12 1.8
0 -34.5 10 0.7
0 -37.5 9.5 0.5
2 -38 8.5 0.5
5 -41 9 0.5
6 -41.5 9 0.5
1 4
6 -41.5 9 0.5
8 -42.5 9 0.2
11 -45 9 0.2
11 -45 9 0.2
1 3
11 -45 9 0.2
14 -47.5 8 0.2
15.5 -48.5 8 0.1
1 4
11 -45 9 0.2
10.5 -47 8 0.1
11.5 -51 9 0.1
13 -52.5 9 0.1
3 7
6 -41.5 9 0.5
6 -45.5 11.5 0.1
4.5 -49 12 0.1
2 -50 11.5 0.1
0 -51 12.5 0.1
-2.5 -50.5 10.5 0.1
-7 -51 10.5 0.1
2 6
1 -20.5 9.5 1.9
2.5 -21.5 9 0.8
3 -24.5 10.5 0.8
6 -24.5 9.5 0.8
7.5 -26 9.5 1.4
9 -27.5 9.5 1.2
1 4
9 -27.5 9.5 1.2
10 -25 9.5 0.1
14 -24 9.5 0.1
16 -23 9.5 0.1
1 2
9 -27.5 9.5 1.2
10.5 -28.5 10 1.2
1 4
10.5 -28.5 10 1.2
10.5 -30.5 10 0.1
9.5 -32.5 10 0.1
9.5 -34.5 10 0.1
1 5
10.5 -28.5 10 1.2
12 -28.5 10 1.2
14 -30 9 1.2
15.5 -32 8.5 1.2
17.5 -33 8.5 1.2
1 2
17.5 -33 8.5 1.2
20 -33 10 1.2
4 12
20 -33 10 1.2
21.5 -30.5 11 0.1
22.5 -26.5 11 0.1
23.5 -26.5 7.5 0.1
24 -24.5 8.5 0.1
24 -22 8.5 0.1
26 -20 8.5 0.1
25 -15.5 8.5 0.1
26.5 -13.5 11 0.1
26.5 -10 11 0.1
29 -8 11 0.1
29 -5 8 0.1
2 7
20 -33 10 1.2
21 -33.5 10.5 0.8
21 -35 10.5 0.8
21 -36.5 10.5 0.8
24 -38 12 0.8
26 -38.5 12 0.8
27 -39.5 12.5 0.8
1 2
27 -39.5 12.5 0.8
32 -39 11 0.1
3 10
27 -39.5 12.5 0.8
28.5 -40.5 10 0.5
30 -41 8.5 0.5
31.5 -43 8.5 0.5
34.5 -43.5 8 0.5
36.5 -45.5 7.5 0.3
39 -47.5 7.5 0.3
41 -48.5 7 0.3
43 -52.5 7.5 0.3
44.5 -52.5 7 0.3
4 8
44.5 -52.5 7 0.3
48 -53.5 7 0.3
54 -55.5 7 0.1
57.5 -57.5 5 0.1
61.5 -57 7.5 0.1
66.5 -56.5 6.5 0.1
69.5 -57.5 5.5 0.1
71.5 -59 5.5 0.1
7 16
44.5 -52.5 7 0.3
46 -54 8.5 0.1
48.5 -56.5 6.5 0.1
51.5 -58 5.5 0.1
53 -61 5.5 0.1
55 -64 8.5 0.1
59 -66.5 7.5 0.1
62.5 -68.5 7.5 0.1
66.5 -71 7 0.1
67.5 -72 8.5 0.1
72.5 -74 7.5 0.1
75 -77.5 12 0.1
76 -81.5 14 0.1
78 -84.5 15 0.1
81 -87.5 17 0.1
85 -89.5 15.5 0.1
7 20
17.5 -33 8.5 1.2
18.5 -36.5 9 0.3
19 -39 9.5 0.3
19.5 -41 8 0.3
18.5 -44 8.5 0.3
20.5 -44.5 8.5 0.3
20 -47 7.5 0.3
21 -48 7 0.3
21 -50 7 0.3
19.5 -50.5 7 0.3
20 -52.5 8 0.1
19.5 -55.5 10.5 0.1
18 -58.5 11.5 0.1
18.5 -64 10 0.1
20.5 -67.5 10 0.1
25 -73 10 0.1
28 -77 10.5 0.1
31 -81 12 0.1
34 -84 12 0.1
34 -84 12 0.1
CONNECTIONS:
0 1
1 1
1 1
0 1
4 1
5 1
5 1
7 1
8 1
8 1
7 1
11 1
12 1
12 1
11 1
4 1
16 1
16 1
18 1
18 1
20 1
21 1
21 1
23 1
23 1
25 1
25 1
20 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}