/*----------------------------------------------------------------
%W% %G%
ctt3219k.asc translated Tue Dec 17 10:29:43 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 12.7128 um length = 23.3102 um area = 930.971 um2
18 three-D points; 19 outline points numbered 1-19
outline diameter = 17.8902 um
3 primary neurites
20 branches totaling 1447.79 um in length, 2771.34 um2 in area
369 tree points translated to 165 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 388
No. trees 4
Text ctt3219k.gr1
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[15],\
dend2[1],\
dend3[21]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
/* neurite geometry*/
for i = 0,14 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,20 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,14 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,20 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
18
-9 -3.5 1.5 0
-8 -4 1.3333 5.0111
-7.5 -3.9167 1.25 8.182
-6.5 -2.5 1.25 12.01
-5.5 -2.125 1.25 13.759
-4.5 -1.5 1.25 15.008
-1.5 -0.21429 1.25 17.579
-1 0.055556 1.2222 17.898
1 1.0278 0.36111 18.958
3 1.65 0.25 19.306
3.5 2 0.15 19.002
4.5 1.5 -0.05 16
5.5 1.6 -0.45 14.2
6.5 1.7 -0.4 12.426
7 2.25 -0.75 10.512
7.5 2.8125 -1 8.625
9 4 -1 4
9 2 -1 0
NEURITE COORDINATES AND DIAMETERS:
2 4
-7 -8.5 0.5 3
-9 -10 2 2.2
-11.5 -11 3 3.8
-15 -14.5 6 3.8
5 12
-15 -14.5 6 3.8
-18 -13.5 7.5 0.6
-21.5 -13.5 10 0.6
-23.5 -16.5 11 0.4
-25 -18 11 0.4
-30.5 -21.5 11.5 0.4
-32 -23.5 12.5 0.4
-36 -23.5 14 0.3
-39.5 -24 13.5 0.3
-41.5 -23.5 14 0.3
-46 -20.5 13.5 0.3
-49 -19 15.5 0.1
1 4
-15 -14.5 6 3.8
-14.5 -18 8 2.8
-15 -21.5 9 2.6
-15 -21.5 9 2.6
3 7
-15 -21.5 9 2.6
-12 -22 9.5 0.1
-9.5 -22.5 10.5 0.1
-7 -24.5 12.5 0.1
-4 -28 14 0.1
-2.5 -32.5 15 0.1
-2.5 -37 14.5 0.1
2 5
-15 -21.5 9 2.6
-16 -24 8.5 2.1
-17.5 -28 8.5 2.1
-19.5 -31 8.5 2.1
-21.5 -33.5 8.5 2.6
2 4
-21.5 -33.5 8.5 2.6
-25 -34.5 9.5 0.6
-28.5 -35 9.5 0.4
-31.5 -35.5 10 0.4
2 4
-31.5 -35.5 10 0.4
-29.5 -38 11 0.1
-31.5 -42 11 0.1
-32.5 -47.5 11 0.1
2 5
-31.5 -35.5 10 0.4
-33 -35 12.5 0.3
-35.5 -36.5 12.5 0.3
-40.5 -37.5 15 0.3
-42 -37.5 15 0.3
4 8
-42 -37.5 15 0.3
-44.5 -35 15 0.2
-46.5 -32.5 14 0.2
-49.5 -29.5 14 0.2
-53.5 -25.5 14.5 0.2
-57 -20.5 16.5 0.2
-60 -18 19 0.2
-63 -17 19 0.2
2 6
-42 -37.5 15 0.3
-44 -39.5 15.5 0.2
-43 -43.5 15 0.2
-43 -48 14.5 0.2
-42 -52 14.5 0.2
-42 -54 14.5 0.2
12 32
-21.5 -33.5 8.5 2.6
-21 -36 10 1.7
-20 -40.5 10.5 1.5
-17 -44.5 10 1.5
-15.5 -47.5 11 1.5
-15 -51.5 11.5 1.5
-14.5 -53.5 11.5 1.5
-15 -57.5 12.5 1.5
-13 -61.5 12.5 1.5
-12 -65 12 1.5
-12.5 -69.5 13.5 1.2
-11.5 -72 13.5 1.2
-11.5 -75.5 12.5 1.2
-11 -79 12.5 1.2
-13 -82 13 1.2
-13.5 -83.5 13 1.2
-12.5 -87 12.5 0.6
-12 -89.5 12.5 0.6
-14 -93.5 12.5 0.6
-12.5 -98.5 14 0.7
-13 -102.5 14.5 0.6
-16.5 -108 17 0.5
-18 -111.5 17 0.5
-20.5 -115 17 0.5
-23 -120.5 17 0.5
-23.5 -123 16.5 0.5
-21 -126.5 16.5 0.5
-20.5 -130 16 0.5
-21 -134.5 15.5 0.5
-20 -140.5 17 0.5
-21.5 -143 17.5 0.5
-21.5 -143 17.5 0.5
1 4
-21.5 -143 17.5 0.5
-20.5 -144.5 17.5 0.3
-17.5 -146.5 16.5 0.3
-14 -146 17.5 0.3
4 9
-21.5 -143 17.5 0.5
-23 -143.5 17.5 0.3
-24 -145 17.5 0.3
-23 -150.5 17 0.3
-22 -156 17 0.3
-21 -164 17 0.3
-21 -168 16.5 0.3
-19.5 -172 17 0.3
-20 -174.5 18 0.3
1 4
-20 -174.5 18 0.3
-17.5 -177 18 0.1
-15 -178 18.5 0.1
-12 -178 18.5 0.1
11 25
-20 -174.5 18 0.3
-18.5 -180 17 0.3
-17.5 -184 18.5 0.3
-18 -186.5 18.5 0.3
-16.5 -191 19 0.3
-17.5 -195 19 0.3
-16 -198.5 19 0.3
-14 -201.5 19 0.3
-14 -206 19 0.3
-10 -208.5 19 0.3
-7.5 -213 19 0.3
-5.5 -218 19 0.3
-3.5 -222.5 21 0.3
0.5 -226 19.5 0.3
4 -230 19.5 0.3
6 -233.5 19.5 0.3
10 -234.5 19.5 0.3
13 -237.5 21 0.3
14 -238 21 0.3
17 -241 19.5 0.3
20.5 -240.5 20 0.3
23 -242.5 20 0.3
26.5 -244 19.5 0.1
30.5 -245.5 19.5 0.1
33.5 -246 19.5 0.1
9 29
8 7 -0.5 0.7
8.5 8.5 -3.5 0.7
12 10.5 -5 0.7
14.5 14 -4.5 0.5
17 17.5 -5.5 0.5
19 19 -5.5 0.4
19.5 21.5 -5.5 0.4
21.5 21.5 -5.5 0.4
25 23.5 -5.5 0.4
27.5 26 -5.5 0.4
29.5 28 -5 0.3
30.5 31 -6 0.3
34 32 -5 0.3
35 33 -6.5 0.3
38 32.5 -6.5 0.3
39.5 34.5 -6.5 0.3
42.5 36.5 -6.5 0.3
42.5 38 -6.5 0.3
44 38 -6.5 0.3
44.5 40 -6.5 0.3
46.5 40 -6 0.3
48 43 -6.5 0.3
49.5 43.5 -8 0.3
52.5 48 -8 0.3
55.5 50.5 -7.5 0.3
57.5 53.5 -6.5 0.3
59.5 56 -6.5 0.3
61.5 56 -6.5 0.3
63.5 57.5 -6 0.3
2 5
1.5 -4.5 0.5 3.9
1.5 -5 7 3.9
2 -5 12 3.9
4 -7 12.5 3.9
4 -7 12.5 3.9
3 7
4 -7 12.5 3.9
6.5 -3.5 12.5 0.1
10 -0.5 12.5 0.1
12 2 12.5 0.1
13.5 8 13 0.1
15.5 13.5 13 0.1
19.5 16.5 13 0.1
1 3
4 -7 12.5 3.9
5.5 -8.5 12 3.6
10 -7.5 12.5 5
1 2
10 -7.5 12.5 5
10.5 -7.5 12.5 5
3 7
10.5 -7.5 12.5 5
14 -5 12.5 2.7
18 -1.5 12.5 2.7
20.5 0.5 13.5 2
23 5 13.5 2
25 7 14 2
29 10.5 14 2
2 4
29 10.5 14 2
33 15 14 1.9
35.5 19.5 14.5 1.9
39.5 22.5 14.5 1.9
11 25
39.5 22.5 14.5 1.9
42 25.5 15 1.9
45 27.5 14.5 1.5
47 31.5 14 1.4
50.5 32 14 1.4
55 34 14 1.4
58.5 32 14.5 1.4
62 32.5 14.5 1.4
65.5 31 15.5 1.2
70 32.5 15 1.2
75.5 30.5 15.5 1.2
80.5 28 14 1.2
83.5 27 14 1.2
86 24.5 13 1.2
90 23.5 11 1.2
93 20.5 11 0.9
97.5 19.5 8.5 0.9
100.5 18.5 7 0.9
104.5 18 6.5 0.9
108 15.5 6.5 0.9
112.5 15 6 0.9
118 14.5 8.5 0.9
121.5 12.5 9 0.9
125.5 13 11 0.9
129 13 13 1.1
1 2
129 13 13 1.1
134 16.5 13 1.1
9 18
134 16.5 13 1.1
138 17.5 16 0.7
140 20 16 0.5
144 20.5 15 0.5
147.5 23.5 16 0.5
151 23 14 0.5
152.5 23 13.5 0.5
156 24 13.5 0.5
161 23 16 0.5
165 25.5 16 0.3
168.5 24.5 16.5 0.3
174 25.5 16.5 0.3
179 28 16.5 0.3
181.5 33 16 0.2
186 37 16 0.2
190 41 17 0.2
199 45 15 0.1
203 45.5 16 0.1
9 22
134 16.5 13 1.1
137.5 15 13 0.2
143.5 13 13.5 0.2
148 12 13.5 0.2
150.5 12 13.5 0.2
152.5 10 13.5 0.2
157.5 7 13.5 0.2
160 6.5 13.5 0.2
164 2.5 12.5 0.2
167 0 12.5 0.2
169.5 -1 12.5 0.2
171 -1.5 12.5 0.2
173 -3.5 12.5 0.2
176.5 -6 12.5 0.2
180.5 -6 12.5 0.2
182.5 -4.5 13 0.2
186 -3 13 0.2
191.5 -1.5 10.5 0.2
197 1.5 10.5 0.2
200.5 7 11.5 0.2
203 10 11.5 0.2
203 10 11.5 0.2
4 9
129 13 13 1.1
132 10 12.5 0.4
134.5 8.5 12.5 0.4
139 7.5 12.5 0.4
142.5 4 14 0.4
145.5 1.5 13.5 0.4
148.5 -1 13.5 0.4
151.5 -3.5 13.5 0.4
153 -6 13.5 0.4
16 30
153 -6 13.5 0.4
156.5 -7.5 13 0.3
161.5 -11.5 13 0.3
164 -14 13 0.3
169.5 -16 14 0.3
174.5 -21 17 0.3
178.5 -23 18 0.3
183.5 -26.5 17 0.3
187.5 -29.5 17 0.3
191 -29.5 17 0.3
195 -32.5 15.5 0.1
200 -32.5 16 0.1
207.5 -34 14 0.1
208.5 -38 13.5 0.1
211.5 -42 13 0.1
212 -45 13 0.1
216 -48 15.5 0.1
219 -51 14 0.1
220.5 -55 14.5 0.1
225 -57 15 0.1
229 -60 13 0.1
234.5 -64 12 0.1
240 -66 12 0.1
244 -70 12.5 0.1
248 -73 12.5 0.1
250 -77 12.5 0.1
254.5 -80 12.5 0.1
260 -84 12 0.1
265 -86.5 11.5 0.1
270.5 -87.5 13 0.1
2 7
153 -6 13.5 0.4
150.5 -7 12.5 0.3
148.5 -9.5 12.5 0.3
146 -9.5 12.5 0.3
144.5 -11.5 12.5 0.3
142 -12 12 0.3
140.5 -12 12 0.3
1 3
140.5 -12 12 0.3
136.5 -9 12.5 0.1
136.5 -9 12.5 0.1
1 4
140.5 -12 12 0.3
139.5 -15 12.5 0.2
139 -18 14.5 0.2
139 -18 14.5 0.2
18 57
39.5 22.5 14.5 1.9
42.5 19 14 0.2
46 17.5 16.5 0.2
47 15.5 16.5 0.2
49.5 12.5 18 0.2
51.5 11 17.5 0.2
52.5 8 17.5 0.2
57.5 5.5 17.5 0.2
57.5 4 17.5 0.2
59 4 17.5 0.2
60.5 2 15.5 0.2
61 0.5 14.5 0.2
63.5 -4 12.5 0.2
66 -4.5 12.5 0.2
66 -6.5 12.5 0.2
68.5 -9 12.5 0.2
70.5 -8 12.5 0.2
71 -10 12.5 0.2
72.5 -11 12.5 0.2
75 -11.5 14 0.2
75.5 -14.5 15.5 0.2
77 -16 15.5 0.2
80 -16 15.5 0.2
81 -17.5 15.5 0.2
81.5 -19 15.5 0.2
85 -19 15.5 0.2
85 -20.5 15.5 0.2
89 -22.5 15 0.2
92.5 -25 14 0.2
92.5 -28 14 0.2
93.5 -31 14 0.2
93.5 -33 14 0.2
95 -34 14 0.2
96.5 -37 16 0.2
96 -40.5 16.5 0.2
99.5 -44 16.5 0.2
101.5 -47 16.5 0.2
102 -51 15.5 0.2
103 -54 15.5 0.2
102 -59 13.5 0.2
103.5 -61 13.5 0.2
103.5 -64.5 13.5 0.2
106.5 -67 13.5 0.2
110.5 -70 13.5 0.2
112 -71.5 13.5 0.2
114.5 -71.5 13.5 0.2
116 -73.5 13.5 0.2
118 -73.5 13.5 0.2
118.5 -72.5 13.5 0.2
120.5 -72.5 13.5 0.2
122 -70.5 13.5 0.2
124.5 -71 13.5 0.2
126 -69.5 13.5 0.2
129 -70.5 14 0.2
130.5 -69.5 14 0.1
136 -68.5 13 0.1
140.5 -68.5 13 0.1
3 6
29 10.5 14 2
33.5 9.5 14 0.1
38.5 10 16 0.1
42.5 11 16 0.1
45 13 16 0.1
50.5 14 16 0.1
1 4
10.5 -7.5 12.5 5
15 -9 12.5 1.2
19 -10 13.5 1.2
19 -10 13 1.2
4 10
19 -10 13 1.2
22 -7.5 13.5 0.7
25.5 -5 13.5 0.7
28 -1.5 13 0.7
32.5 2 13 0.7
35.5 2.5 12.5 0.7
37.5 6.5 12.5 0.3
43 8.5 12.5 0.3
48 9 12.5 0.3
50.5 9 12.5 0.3
4 9
19 -10 13 1.2
20 -14 13.5 0.3
20.5 -19.5 13.5 0.3
22.5 -24 13.5 0.3
24.5 -30.5 13.5 0.3
27 -35 13.5 0.3
29 -39 13.5 0.3
30 -43 13.5 0.3
32.5 -45 13.5 0.3
5 7
10 -7.5 12.5 5
11 -14.5 12.5 0.4
7.5 -19 16 0.4
4 -22.5 15.5 0.2
0 -27.5 18 0.2
-3 -36.5 19 0.1
-3.5 -41.5 18.5 0.1
CONNECTIONS:
0 1
0 1
2 1
2 1
4 1
5 1
5 1
7 1
7 1
4 1
10 1
10 1
12 1
12 1
0 1
0 1
2 1
3 1
4 1
5 1
6 1
7 1
7 1
6 1
10 1
10 1
12 1
12 1
5 1
4 1
3 1
17 1
17 1
2 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}