/*----------------------------------------------------------------
%W% %G%
ctt3219m.asc translated Tue Dec 17 10:29:44 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 11.6502 um length = 21.752 um area = 796.125 um2
13 three-D points; 14 outline points numbered 1-14
outline diameter = 17.0615 um
3 primary neurites
28 branches totaling 1755.23 um in length, 5409.43 um2 in area
482 tree points translated to 202 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 496
No. trees 4
Text CTT3219M.GR1
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[33],\
dend2[19],\
dend3[1]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
/* neurite geometry*/
for i = 0,32 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,18 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,32 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,18 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,0 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
13
-9.5 2 2.5 0
-8.5 1 1.125 6.1288
-8.5 0.5 1.125 7.1107
-7.5 0.625 0.75 10.762
-6.5 0.15 0.65 13.303
-5 0.32143 0.39286 15.359
-3 -0.41667 0 16.167
0.5 -1.2083 -1.1875 16.595
1 -1.1429 -1.25 16.293
4 -0.83333 -1.25 14.342
5.5 0.25 -1 11.5
8 0.83333 -0.83333 4.5338
8.5 -0.5 0 0
NEURITE COORDINATES AND DIAMETERS:
4 5
-2.5 8.5 0 7.2
4 10.5 8 4.8
10 12 11 5.6
17 12 11 5.6
26.5 13 12 5.6
2 5
26.5 13 12 5.6
29.5 16.5 13.5 3.7
34.5 20.5 12 4.3
39.5 22.5 12 5.1
41.5 23 12.5 4.3
1 2
41.5 23 12.5 4.3
46 21 14 4.3
2 4
46 21 14 4.3
50.5 17.5 14.5 2.9
56 17 15.5 3.9
56 17 15.5 3.9
2 5
56 17 15.5 3.9
60 17.5 14 2.2
66 20 11.5 1.4
70.5 20 13 1.4
72.5 21 13 1.4
1 4
72.5 21 13 1.4
74.5 18 12.5 0.1
75 15.5 12.5 0.1
75 15.5 12.5 0.1
3 9
72.5 21 13 1.4
74.5 22.5 13.5 1.3
77 23.5 13.5 1.3
79.5 22.5 13 1.3
84 22.5 13 1.1
88 21.5 12 1.1
91.5 20.5 12 1.1
94.5 20 12.5 1.1
96.5 19.5 12 1.5
2 6
96.5 19.5 12 1.5
98 17.5 12.5 0.1
101 13.5 13 0.1
104.5 10.5 13 0.1
107 9 11 0.1
110.5 8 11 0.1
10 26
96.5 19.5 12 1.5
99.5 20.5 13.5 1.1
103 22.5 13 1.1
106 23.5 12 1.1
107 24 12 1.1
109.5 26 12.5 1.1
111.5 26 12.5 1.1
115.5 30 14 1.1
118 29.5 13.5 1.1
123 32.5 14.5 1.1
124.5 34 13.5 0.9
127 34.5 15 0.9
131.5 37.5 16 0.9
134.5 39 16.5 0.9
138 41 14 1
142.5 42 12.5 1
146.5 42 13.5 1
149 44 13.5 1
153 44.5 14 1
156.5 45.5 14.5 1
163.5 46 14.5 1
166 48 13.5 1
170.5 47.5 13 0.8
172.5 48.5 12 0.8
175 46 12 0.8
179.5 44 13 1.1
3 9
179.5 44 13 1.1
182.5 43.5 13.5 0.3
185 44 13.5 0.3
187.5 43.5 12 0.3
190.5 41.5 12 0.3
194 38 12 0.1
196.5 36.5 12 0.1
199.5 36.5 12 0.1
202 36.5 12 0.1
3 11
179.5 44 13 1.1
178.5 42.5 13.5 0.3
179.5 38.5 12 0.4
181.5 36 13 0.4
183.5 34 12.5 0.4
184.5 32 12.5 0.4
186.5 30.5 12.5 0.4
189 27.5 12.5 0.4
188.5 26 12 0.1
189.5 23 12.5 0.1
189 21.5 9.5 0.1
3 7
56 17 15.5 3.9
56.5 13.5 16.5 1.6
60 10.5 15.5 1.6
64 9 15 1.9
66 6.5 14.5 1.9
70.5 5.5 13.5 1.9
72 3.5 16.5 1.9
2 6
72 3.5 16.5 1.9
70 0 16.5 0.1
69.5 -4 17 0.1
66.5 -4.5 17 0.1
66.5 -8 17 0.1
63.5 -9.5 17 0.1
11 27
72 3.5 16.5 1.9
74 1 14.5 1.1
76.5 -0.5 14 1.1
80.5 -2.5 14 1.1
84 -4.5 12 1.9
87.5 -6.5 13 1.7
90 -7.5 12 1.7
94 -6.5 13 1.3
96.5 -6 13.5 1.3
99.5 -6.5 15 1.3
104 -5 15 1.3
109.5 -4 15.5 1.3
112.5 -3.5 16.5 1.3
116 0.5 16.5 1.3
119 1.5 15.5 1.7
122.5 5.5 17.5 1.7
125.5 5.5 16 1.7
131.5 5.5 15.5 1.7
134.5 4.5 14 1.7
137 4.5 14.5 1.7
140 4 12.5 1.7
142 3 13 1.7
146.5 2.5 12 1.7
150.5 0.5 11 1.7
153.5 0 11 5.3
159.5 -1.5 11 0.1
159.5 -1.5 11 0.1
1 3
46 21 14 4.3
47.5 22.5 14.5 2.2
50 24 14.5 1.7
10 21
50 24 14.5 1.7
55 23 13 0.3
61.5 25 12.5 0.3
66.5 28 12 0.3
68.5 29 12 0.1
70.5 31.5 12 0.1
74 34.5 12 0.1
76 35 12.5 0.1
78.5 37.5 10.5 0.1
82 40.5 10.5 0.1
85 42 10.5 0.1
87 43.5 10.5 0.1
90 49 10.5 0.1
91 51 10.5 0.1
94.5 53 11 0.1
99.5 55 11.5 0.1
103.5 55.5 11.5 0.1
108.5 60 10.5 0.1
112 62.5 10.5 0.1
116.5 65 10.5 0.1
123 70 10.5 0.1
1 4
50 24 14.5 1.7
52.5 26 17 1
53 28 17.5 1
54 29.5 18.5 1
1 4
54 29.5 18.5 1
55 32 19 0.1
55 36 16 0.1
54.5 37.5 16 0.1
2 4
54 29.5 18.5 1
56 30 17 0.7
59.5 31.5 17.5 0.7
61.5 34.5 15.5 0.7
2 5
61.5 34.5 15.5 0.7
61 36.5 15.5 0.1
59 39 15.5 0.1
58 44 15.5 0.1
58.5 44 15.5 0.1
5 13
61.5 34.5 15.5 0.7
64 36 14.5 0.7
67.5 39 13 0.7
69.5 40.5 12.5 0.7
73.5 42.5 13.5 0.7
76.5 44 13.5 0.7
78 47.5 13 0.7
81 48.5 13.5 0.7
82 52.5 14 0.7
84.5 55.5 12.5 1.2
84.5 57.5 12 0.7
87.5 59.5 12 0.7
89 61.5 12 1.4
4 9
89 61.5 12 1.4
88 64 11 0.1
87 66.5 9.5 0.1
91.5 69.5 11.5 0.1
94.5 71.5 10.5 0.1
96.5 75.5 10.5 0.1
98.5 78.5 10.5 0.1
100 81 11 0.1
102.5 83.5 11 0.1
10 26
89 61.5 12 1.4
92 61.5 11.5 0.6
96 63 13.5 0.6
99.5 63.5 11 0.6
102 64 13 0.6
104.5 66 11 0.8
108.5 66.5 13 0.8
110 70 12.5 0.8
114.5 70 12.5 0.6
117 71.5 14 0.6
120.5 72.5 13 0.4
124 73 13 0.4
127.5 75 13 0.4
130.5 76 13 0.4
134.5 79 13 0.4
139 79.5 13 0.4
142.5 78.5 13 0.4
145.5 80 13 0.4
148.5 81 14 0.2
151 83.5 14 0.2
153.5 84 14 0.2
157.5 82 14.5 0.2
160 80 14 0.2
163 79 15 0.2
165 77.5 14.5 0.2
168 76.5 13 0.1
9 24
41.5 23 12.5 4.3
42 24.5 13 1.4
44 29.5 13 1.4
46.5 29.5 13.5 1.4
48.5 29.5 13.5 1.4
51.5 32 14.5 1.4
55 33.5 14 1.1
57 35 14 1.1
60.5 36 12.5 1.1
62.5 38 12.5 1.1
65.5 38.5 12.5 1.1
69 42 10.5 1.1
71 43 11 1.1
73.5 47 11 1.1
72 51.5 11 1.1
72 53 11 1.1
73.5 56.5 12.5 1.1
71 60 12 1.1
72 65.5 12 1.1
71.5 67.5 14.5 1.1
72.5 70 14.5 1.1
72 72.5 14.5 1.1
74 75 13 1.1
73 78.5 13 1.1
1 3
73 78.5 13 1.1
72 80 13.5 0.4
72 81 13 0.4
2 5
72 81 13 0.4
72.5 83.5 13.5 0.1
73 86.5 13.5 0.1
74 89.5 14 0.1
74.5 92.5 14 0.1
7 22
72 81 13 0.4
70 82 14 0.6
68 83 13.5 0.6
67 85 13 0.6
66 88 14 0.4
63 89 14.5 0.4
63 91.5 15.5 0.4
64.5 94.5 15 0.4
63 99.5 16.5 0.4
65 103.5 16.5 0.4
65 106 17 0.4
67 108.5 17 0.4
65.5 111.5 17 0.4
67.5 114 17 0.4
66.5 116 17 0.4
68 117.5 17 0.4
67.5 120 18 0.4
69 122 18 0.4
68 125.5 18.5 0.4
71 129 19.5 0.4
73 134 17.5 0.4
73 134 17.5 0.1
1 3
73 134 17.5 0.1
75 134.5 17.5 0.1
76 136 17.5 0.1
1 3
73 134 17.5 0.1
72 135.5 17.5 0.1
71.5 137.5 17.5 0.1
10 30
73 78.5 13 1.1
75.5 81 12.5 0.4
78 84.5 13 0.4
79 89 11 0.7
77.5 93 11.5 0.7
80 95 11 0.7
81 98.5 12 0.7
82 100.5 13 0.7
81.5 103.5 13 0.5
84.5 105 14 0.5
85.5 108.5 14.5 0.5
87 110 14.5 0.4
87.5 113 14.5 0.4
89.5 116 14.5 0.4
91.5 117.5 14 0.4
93 121 14 0.5
95 123 14 0.5
97 124 14 0.5
97.5 126.5 15.5 0.5
98.5 130 14.5 0.5
100.5 130.5 14.5 0.5
103.5 134 13 0.5
105.5 134 13 0.5
107 137.5 12 0.5
111 138.5 12 0.5
113 142 12 0.5
117 143.5 13.5 0.5
120 145.5 13.5 0.5
123 147 13.5 0.5
124.5 149 13.5 0.5
1 4
124.5 149 13.5 0.5
126 148.5 13.5 0.3
128 149.5 14 0.3
128 150.5 14 0.3
1 4
124.5 149 13.5 0.5
124 150.5 13 0.1
125.5 152 13 0.1
125.5 152 13 0.1
5 13
26.5 13 12 5.6
28.5 11 15.5 0.4
31 10.5 14 0.4
32.5 6.5 12.5 0.6
36.5 4 12.5 0.6
38.5 2.5 14 0.4
42 2 12.5 0.4
45.5 1 14 0.4
51.5 0.5 13.5 0.4
56 0 12.5 0.4
61 0 15.5 0.2
64.5 -1.5 14 0.2
65.5 -3 14 0.1
2 3
-5.5 7.5 0 4.7
-7 12 7.5 4.7
-9.5 17 10.5 5.3
3 7
-9.5 17 10.5 5.3
-7.5 20 10.5 2.2
-2 23.5 12 2.2
1 27.5 14.5 2.2
2.5 31 14.5 2.2
6 34.5 15.5 2.2
9.5 37 16 2.2
8 19
9.5 37 16 2.2
14 37.5 16 0.4
19.5 39 15 0.4
23.5 39.5 13.5 0.4
26.5 42.5 14 0.4
30 44.5 14 0.4
31.5 45 14 0.4
34.5 47.5 12.5 0.3
36.5 49 13.5 0.3
41.5 51 13 0.1
45.5 53.5 13.5 0.1
49.5 54 13.5 0.1
53 56 13.5 0.1
57.5 57 13.5 0.1
60.5 58.5 13 0.1
63 60.5 13 0.1
66 62.5 13.5 0.1
69 65.5 13.5 0.1
70.5 68 14.5 0.1
1 3
9.5 37 16 2.2
9 38.5 15.5 1.5
9 40.5 15.5 1.5
2 6
9 40.5 15.5 1.5
7 43.5 15.5 0.1
7 46.5 15.5 0.1
7 49 15.5 0.1
7.5 55.5 16.5 0.1
6.5 58.5 16.5 0.1
15 35
9 40.5 15.5 1.5
11 44 17 1.4
13.5 45.5 17 1.4
15 46.5 17 1.1
16.5 50.5 17 1.1
19 52.5 17 1.1
19 55.5 16.5 1.1
22.5 59.5 16.5 1.1
23 62.5 14 1.1
26 66 14 1.1
30.5 68.5 14 1.1
30.5 71 14 1.1
34.5 72.5 13 1.1
35 76 13 1.1
38 80 13 1.1
39.5 81 13 1.1
39.5 85 12.5 1.1
45 88 12.5 1.1
48.5 91 13 1.1
55.5 92.5 14 1.1
60.5 94 14 1.1
66.5 100 13 1.1
70.5 102.5 12.5 1
73 104 11.5 1.1
75 108.5 13 1.1
75 111.5 15 1.1
75 114 16 1.1
73.5 117 14.5 1.1
75 120 14.5 0.9
73.5 122.5 14 0.9
71.5 126.5 14 0.9
72.5 130.5 13.5 0.9
72.5 132.5 13.5 0.9
77 135.5 17 0.9
79.5 137 18 0.9
1 5
79.5 137 18 0.9
81 136.5 17.5 0.2
84 137.5 17.5 0.2
84 138.5 17.5 0.2
84 138.5 17.5 0.2
1 5
79.5 137 18 0.9
79.5 138 18 0.2
81.5 140 19.5 0.2
83.5 140 19 0.2
84 138.5 19 0.2
2 6
-9.5 17 10.5 5.3
-12.5 21 13.5 2.8
-15.5 22 15 2.8
-18.5 25.5 15 2.8
-19.5 27.5 15 1.9
-22.5 28 14.5 2.1
1 3
-22.5 28 14.5 2.1
-26 27 17 0.4
-28.5 27 16.5 0.2
3 7
-28.5 27 16.5 0.2
-30.5 25 15.5 0.1
-33 21.5 15 0.1
-36.5 20.5 15 0.1
-39 17.5 16 0.1
-44 17.5 15 0.1
-47 18 15.5 0.1
4 10
-28.5 27 16.5 0.2
-30 28 15.5 0.2
-32 29 16 0.2
-36.5 27.5 16.5 0.2
-41.5 26 16 0.2
-47 27.5 16.5 0.2
-52.5 29.5 16 0.2
-56.5 31.5 17.5 0.2
-64 36 16 0.1
-64 36 16 0.1
1 3
-22.5 28 14.5 2.1
-22 30.5 14.5 2.3
-25 35 16 2.3
10 30
-25 35 16 2.3
-23.5 37.5 16.5 0.5
-22.5 40 15.5 0.5
-21.5 41.5 15.5 0.8
-21 44 15.5 0.6
-18 46 17 0.6
-16.5 47 17 0.6
-15.5 50.5 15.5 0.5
-14 52.5 15.5 0.5
-11.5 54 15.5 0.5
-10.5 56.5 15.5 0.5
-10 58.5 15.5 0.5
-11 60 15.5 0.5
-10.5 63 15 0.5
-11 65 16.5 0.5
-10.5 68 15.5 0.5
-10.5 71.5 16.5 0.5
-7.5 74.5 18.5 0.4
-6 77 19.5 0.4
-5.5 79.5 21.5 0.4
-3 81.5 19.5 0.4
-1.5 85.5 21 0.4
0 86.5 21 0.4
3 87.5 21 0.4
4.5 91.5 19 0.4
5.5 95 17.5 0.4
7.5 97 17 0.4
7 99.5 16 0.4
9 102.5 16.5 0.4
10.5 108 17 0.4
3 6
10.5 108 17 0.4
7 109 17 0.1
4 110 17 0.1
1.5 114.5 17.5 0.1
-4.5 117.5 17.5 0.1
-6.5 117.5 17.5 0.1
3 10
10.5 108 17 0.4
12.5 110.5 16 0.3
14 112 15.5 0.3
15 115.5 15.5 0.3
17.5 119 16 0.3
17.5 121.5 16.5 0.3
18.5 123 15 0.3
18 126 15 0.3
19 128.5 14.5 0.3
19 131 14.5 4.5
2 6
-25 35 16 2.3
-27.5 36.5 16 1.9
-29.5 38.5 16.5 1.9
-31.5 40 16 1.9
-33.5 44 16.5 1.9
-37.5 46.5 16.5 1.9
4 13
-37.5 46.5 16.5 1.9
-37.5 50.5 17 0.1
-39 53.5 17 0.1
-42 54 17.5 0.1
-42 57.5 15 0.1
-44 59.5 14.5 0.1
-43.5 62.5 14.5 0.1
-45 63.5 14.5 0.1
-45 64.5 14.5 0.1
-47.5 66.5 14.5 0.1
-48.5 69.5 15 0.1
-49.5 74 15.5 0.1
-52 78 15.5 0.1
5 13
-37.5 46.5 16.5 1.9
-41 46 18 1.4
-45.5 45 18 1.4
-50 44.5 18 1.4
-54 46 18 1.4
-58.5 49 17.5 1.4
-63 52 17.5 1.4
-67.5 53.5 16.5 1.4
-69.5 54 16.5 1.4
-72 55 16 4.6
-74.5 57.5 16 0.1
-76 60.5 16 0.1
-78.5 64 16 0.1
7 16
0 1.5 0 1.2
-1 -0.5 -3 1.2
-0.5 -3.5 -4.5 1.2
-2 -7.5 -5.5 1.2
-3 -13.5 -6 1.2
-2 -16.5 -7.5 0.8
-4 -20 -6 0.8
-4.5 -21.5 -6 0.8
-5.5 -24.5 -6 0.5
-6 -29 -5.5 0.5
-8.5 -35 -5.5 0.3
-10.5 -38 -5.5 0.3
-12.5 -41 -5 0.3
-13 -48 -4 0.3
-13.5 -50.5 -4.5 0.3
-14.5 -52.5 -3 0.1
CONNECTIONS:
0 1
1 1
2 1
3 1
4 1
4 1
6 1
6 1
8 1
8 1
3 1
11 1
11 1
2 1
14 1
14 1
16 1
16 1
18 1
18 1
20 1
20 1
1 1
23 1
24 1
24 1
26 1
26 1
23 1
29 1
29 1
0 1
0 1
1 1
1 1
3 1
3 1
5 1
5 1
0 1
8 1
9 1
9 1
8 1
12 1
13 1
13 1
12 1
16 1
16 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}