/*---------------------------------------------------------------- %W% %G% ctt3219z.asc translated Tue Dec 17 10:29:46 1996 by ntscable 2.0 source file syntax: Eutectic output file syntax: CABLE soma: diameter = 12.9316 um length = 26.3711 um area = 1071.35 um2 24 three-D points; 33 outline points numbered 1-33 outline diameter = 18.386 um 8 primary neurites 25 branches totaling 1873.34 um in length, 2914.37 um2 in area 947 tree points translated to 208 segments (1 requested) Neurites divided into segments of equal dx between adjacent digitized branch points. Segment length constrained to be < 10 um. No. points 980 No. trees 9 Text Displaced bipolar cell from 3-21-89, HRP. ----------------------------------------------------------------*/ /* create sections */ create soma,\ dend1[1],\ dend2[5],\ dend3[9],\ dend4[19],\ dend5[3],\ dend6[1],\ dend7[3],\ dend8[1] /*----------------------------------------------------------------*/ proc geometry() { local i, j /* soma geometry */ soma { nseg = 1 pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } /* connect primary neurites */ soma connect dend1[0] (0), 0.5 soma connect dend2[0] (0), 0.5 soma connect dend3[0] (0), 0.5 soma connect dend4[0] (0), 0.5 soma connect dend5[0] (0), 0.5 soma connect dend6[0] (0), 0.5 soma connect dend7[0] (0), 0.5 soma connect dend8[0] (0), 0.5 /* neurite geometry*/ for i = 0,0 { dend1[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,4 { dend2[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,8 { dend3[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,18 { dend4[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,2 { dend5[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,0 { dend6[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,2 { dend7[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,0 { dend8[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } /* branching topology*/ for i = 1,0 { dend1[fscan()] connect dend1[i] (0), fscan() } for i = 1,4 { dend2[fscan()] connect dend2[i] (0), fscan() } for i = 1,8 { dend3[fscan()] connect dend3[i] (0), fscan() } for i = 1,18 { dend4[fscan()] connect dend4[i] (0), fscan() } for i = 1,2 { dend5[fscan()] connect dend5[i] (0), fscan() } for i = 1,0 { dend6[fscan()] connect dend6[i] (0), fscan() } for i = 1,2 { dend7[fscan()] connect dend7[i] (0), fscan() } for i = 1,0 { dend8[fscan()] connect dend8[i] (0), fscan() } } geometry() SOMA COORDINATES AND DIAMETERS: 24 -7.5 23 0 0 -7.5 22.25 0 1.5 -6.5 22.25 0 6.5 -6.5 20.75 0 9.5 -6.5 18.5 0 14 -5 18.429 0 15.143 -3 18.25 0 16.5 -2 18.65 1.25 17.876 -0.5 18.5 1.25 18.173 1 18.25 1.25 17.678 2 18.25 1.25 17.678 2.5 18 1.25 18.173 3 17.708 1.25 18.586 4 17.375 1.5 18.856 5.5 17.25 2.5 18.5 6.5 16.917 2.5 15.167 7 16.917 2.5 13.833 7 17.667 2.5 12.333 8 17.375 2.5 10.25 9 17 2.5 8 10 17.25 2.5 5.5 10.5 18 2.5 3 10.5 18.75 2.5 1.5 11 19 2.5 0 NEURITE COORDINATES AND DIAMETERS: 4 21 6 27 0.5 1.9 7 29 0.5 1.8 7.5 30.5 1 1.5 7.5 32 0.5 1.3 7.5 33.5 1 1 6.5 36 1 1.3 5.5 37.5 -1 1.3 5 39 -1 1.2 4 40.5 1.5 0.7 3.5 41.5 1.5 0.7 3 42 1.5 0.4 2 42 3 0.3 1.5 40.5 3 0.3 1 41 3 0.3 0.5 42 3 0.3 0 43.5 3.5 0.3 -1 44.5 3.5 0.2 -2 45 3.5 0.2 -3.5 46 3.5 0.2 -4 47 3 0.2 -3.5 48.5 3 0.2 3 14 11 19 -0.5 1 13.5 19 1 0.8 15.5 20 0 0.8 16.5 21 0 0.8 17.5 22.5 0 0.8 16 23.5 2.5 1.1 14.5 24 2.5 0.8 15.5 25.5 4.5 0.5 16.5 25.5 5 0.6 17 26 5 0.6 18.5 26 5.5 0.5 18.5 27 5.5 0.5 19.5 28 8.5 0.6 21 28 8.5 1 4 16 21 28 8.5 1 21.5 28.5 9 0.7 22.5 29 8 0.5 24.5 28.5 7 0.5 25 30 7 0.5 25.5 30.5 7 0.5 26.5 31.5 10 0.4 28 32 10 0.4 29.5 33.5 12.5 0.3 32 34 12.5 0.3 33 34 11.5 0.3 34.5 35 11.5 0.3 36.5 36.5 13 0.2 39.5 38.5 13 0.2 40.5 39 12 0.2 42 39.5 12 0.2 3 16 21 28 8.5 1 20.5 27 9 0.7 20.5 26 9.5 0.7 21.5 24.5 9 0.7 22 24 9.5 0.7 23.5 22 7.5 0.6 24 21 8.5 0.6 24.5 19.5 8 1 26 18.5 8 0.7 27 17 7 0.4 28 16 7.5 0.4 29 15.5 9 0.4 30 15 8.5 0.9 31.5 14 8.5 0.4 32.5 13.5 9.5 0.7 33 13.5 11 0.5 2 9 33 13.5 11 0.5 34 14 9.5 0.3 36 15 10 0.3 38 16 10 0.3 40 17.5 12 0.3 42.5 18 12.5 0.3 44.5 20 11.5 0.3 45 21.5 11.5 0.3 45 22.5 14.5 0.3 6 28 33 13.5 11 0.5 33.5 12 8.5 0.5 35 11 8.5 0.5 35.5 10.5 8.5 0.5 37 9 8.5 0.3 37 8 8.5 0.3 38.5 7 10.5 0.3 38.5 5 10.5 0.3 39.5 3.5 10.5 0.3 40 2.5 10 0.3 40 1 10 0.3 40 -0.5 10 0.3 40.5 -2 10 0.3 41.5 -3.5 12 0.3 41.5 -4.5 12 0.3 42.5 -6.5 12 0.3 43 -8.5 12 0.3 43 -9.5 12 0.3 42.5 -10 12 0.3 42 -10.5 12 0.3 42.5 -12 13 0.3 42.5 -13.5 13 0.3 43 -16 12 0.3 46 -16.5 15.5 0.3 47.5 -17 15.5 0.1 48.5 -17.5 15.5 0.1 51 -19 15.5 0.1 53 -19.5 13 0.1 1 3 6.5 23 17 1.8 8 23.5 15.5 1.6 9.5 24 12.5 1.4 9 45 9.5 24 12.5 1.4 11 23 14.5 1.1 12 21.5 13.5 1.3 12.5 19.5 17.5 1.3 12.5 18 17.5 1.3 13.5 17 17.5 1.3 14 15 17.5 1.3 14 14 17.5 1.3 13 12 17.5 1.3 13 10.5 17.5 1.3 12.5 9 18.5 1.1 13 7.5 18.5 1.1 13.5 5 18.5 1.1 13 3.5 18.5 1.1 13.5 2 18.5 1.1 14.5 2 16.5 0.9 16 0.5 17 0.8 16 -0.5 17 0.8 17.5 -1 17 0.8 19 -2.5 17 0.8 21 -2.5 17 0.8 22.5 -2.5 17 0.8 25 -3 16.5 0.8 27 -3.5 16.5 0.8 28.5 -3.5 16.5 0.8 30 -3.5 16.5 0.8 33 -3.5 16.5 0.8 33.5 -2 16.5 0.8 34.5 -1 17.5 0.8 36 1 17.5 0.8 38.5 2 17.5 0.8 39.5 2.5 17.5 0.7 43 4 17.5 0.9 44.5 4.5 17.5 0.9 45.5 3.5 17.5 0.9 46 2.5 17.5 0.9 48 1.5 17.5 0.9 49.5 1.5 17.5 0.9 51.5 1.5 17.5 0.9 52.5 0.5 17.5 0.9 56 -0.5 16 0.6 57.5 -0.5 16 0.6 59 -0.5 13.5 0.6 60 -0.5 13.5 0.6 61 -1 13.5 0.6 4 14 61 -1 13.5 0.6 64 -1.5 13.5 0.5 66 -1 13.5 0.5 70.5 0 13.5 0.5 75.5 1 13.5 0.5 76.5 3 13.5 0.5 79 3.5 13.5 0.5 80.5 4.5 13.5 0.5 82.5 5.5 13.5 0.5 83.5 4.5 13.5 0.5 86.5 4.5 13.5 0.5 89 4 13.5 0.5 91 4.5 13.5 0.5 92.5 3.5 11.5 0.5 2 7 92.5 3.5 11.5 0.5 94 2 11.5 0.5 97 1 11.5 0.4 100 1 11.5 0.4 101 -1 15 0.4 102.5 -1 14 0.4 103.5 -1 14 0.4 1 3 103.5 -1 14 0.4 105 -2.5 14 0.4 106.5 -2.5 15 0.4 3 11 103.5 -1 14 0.4 103.5 -0.5 12 0.5 105 1 14.5 0.5 107 1.5 14.5 0.5 107.5 2.5 14.5 0.5 111 3.5 14 0.5 114 4.5 14 0.5 117.5 5 12.5 0.5 120.5 3.5 13 0.5 122.5 3 18 0.3 124 3 18 0.3 3 11 92.5 3.5 11.5 0.5 92 4.5 10 0.3 94 5 10 0.3 96 5.5 10 0.3 97 7.5 12.5 0.2 99.5 8 11 0.2 101 9 11 0.2 102.5 10.5 11 0.2 105.5 10.5 8.5 0.2 107.5 10.5 8.5 0.2 109 11 8.5 0.2 11 54 61 -1 13.5 0.6 62 0.5 15.5 0.4 64 1.5 15.5 0.4 64.5 2.5 15.5 0.4 66.5 3.5 18 0.3 70 6 14.5 0.3 72 8 14.5 0.3 73 9.5 14.5 0.3 73 11 14.5 0.3 73 12 14.5 0.3 73.5 12.5 14.5 0.3 73.5 13.5 14.5 0.3 75 17.5 14.5 0.3 77 19 10 0.3 80.5 20.5 10 0.3 82 20.5 10 0.3 83.5 21.5 10 0.3 86 22 10 0.3 87.5 22 10 0.3 88.5 23 10 0.3 89 24 10 0.3 91.5 24 10 0.3 94 24.5 8.5 0.3 95.5 25.5 8.5 0.3 96.5 25 8.5 0.3 99.5 25 7.5 0.2 100.5 25 7.5 0.2 102.5 25 7.5 0.2 103.5 25.5 7.5 0.2 105 25.5 7.5 0.2 105 26.5 7.5 0.2 106 26.5 7.5 0.2 107.5 27 7.5 0.2 110.5 27.5 7.5 0.2 111.5 28 7.5 0.2 112 28.5 7.5 0.2 114 29 7.5 0.2 115.5 30.5 7.5 0.2 118 31 7.5 0.2 119 33 7.5 0.2 120 33 7.5 0.2 120.5 33.5 7.5 0.2 122 35.5 7.5 0.2 125 35.5 7.5 0.2 126.5 36 7.5 0.2 127.5 36.5 7.5 0.2 127.5 37.5 7.5 0.2 128.5 39.5 7.5 0.2 130.5 40 7.5 0.2 132 41 7.5 0.2 132 45 8.5 0.2 134 47 8.5 0.2 134.5 47.5 8.5 0.2 136 48.5 7 0.2 4 16 9.5 24 12.5 1.4 9.5 25.5 13.5 0.4 10.5 27.5 13.5 0.4 12 29.5 12.5 0.3 15 32 12.5 0.3 17 33.5 12.5 0.3 21 34.5 12.5 0.3 22.5 36.5 12.5 0.3 24.5 38.5 12.5 0.3 26 40.5 13.5 0.1 28 42 13.5 0.1 29.5 43 13.5 0.1 30 43.5 13.5 0.1 32 45 14 0.1 33.5 45.5 13 0.1 36 46.5 13 0.1 2 7 -3.5 10 0.5 3.3 -3 10 9.5 3.3 -3.5 9 10.5 3.3 -4 7 10.5 3.3 -5 5 12 3.3 -5 2.5 12 3.7 -5.5 1.5 12 4.1 2 6 -5.5 1.5 12 4.1 -5.5 -1.5 12 3.9 -6 -3 10 3.2 -7 -4.5 12 2.6 -7 -5 14 2.6 -8 -6.5 14 2.6 2 6 -8 -6.5 14 2.6 -8.5 -8.5 16 2.6 -8 -11 17.5 2.5 -7 -13.5 18 2.4 -7.5 -15 18 2.5 -8 -16.5 18 2.4 6 27 -8 -16.5 18 2.4 -7.5 -18.5 18 1.1 -6.5 -19.5 18 1 -5 -20.5 19.5 0.8 -5 -22.5 19.5 0.9 -5.5 -23.5 17.5 0.7 -6.5 -25.5 18.5 0.5 -6.5 -26.5 18.5 0.5 -6 -28.5 18.5 0.4 -5 -30 18.5 0.4 -5 -32 18.5 0.5 -5 -33 18.5 0.7 -5 -34.5 18.5 0.7 -3 -35.5 19.5 0.6 -0.5 -35.5 19.5 0.6 1 -35.5 17.5 0.4 2.5 -35 17.5 0.4 4.5 -35 17.5 0.4 6.5 -35.5 16 0.4 8 -36 16 0.4 10 -36 16 0.4 12 -36 16 0.4 13.5 -37.5 11.5 0.4 15 -39 11.5 0.4 19 -41 11.5 0.4 22 -42.5 11.5 0.4 23.5 -44 11.5 0.6 4 15 23.5 -44 11.5 0.6 24.5 -43.5 12.5 0.5 31.5 -42.5 12.5 0.5 33.5 -42.5 12.5 0.5 36.5 -41.5 11 0.4 37.5 -40.5 11 0.4 40 -40.5 7.5 0.4 41.5 -38.5 7.5 0.4 43 -37 7.5 0.4 46 -36 6.5 0.4 47.5 -34 6.5 0.4 49.5 -34 6.5 0.4 50.5 -34 6.5 0.4 52 -34 5.5 0.4 53 -33.5 5.5 0.5 2 7 53 -33.5 5.5 0.5 54.5 -34.5 6.5 0.2 56.5 -35.5 6.5 0.2 57.5 -36.5 6.5 0.2 59 -38 6.5 0.2 59.5 -39 6.5 0.2 60 -40 6.5 0.2 5 23 53 -33.5 5.5 0.5 53 -33 5.5 0.6 54 -32 5.5 0.5 54.5 -30 5.5 0.5 55.5 -29.5 5.5 0.5 57 -29.5 5.5 0.5 59 -28 5.5 0.5 60 -28 5.5 0.5 61 -26.5 5.5 0.5 63.5 -25 5.5 0.5 65 -23 5.5 0.5 66 -22 6 0.3 68 -21 6 0.3 69.5 -20.5 6 0.3 70.5 -19.5 6 0.3 72 -18 6 0.3 73.5 -17 6 0.3 76 -15.5 6 0.3 78 -15.5 6 0.3 79 -14.5 7 0.3 82 -13 7 0.3 83 -13 7 0.3 85 -13 7 0.3 3 17 23.5 -44 11.5 0.6 24 -45 11.5 0.5 25 -45 11.5 0.4 26 -45.5 11 0.2 27.5 -46.5 11 0.2 28.5 -46.5 11 0.2 30 -47 9.5 0.2 30.5 -47 9.5 0.4 32 -46.5 9.5 0.3 33 -46 9.5 0.3 35.5 -47 9.5 0.3 39 -47.5 9.5 0.3 42 -47 8 0.3 43 -46 8 0.3 45 -46 5.5 0.3 46.5 -44.5 6.5 0.3 48 -43.5 6.5 0.3 2 14 -8 -16.5 18 2.4 -8 -16.5 18 1.5 -9.5 -16.5 18 1.5 -10.5 -17 18 1.5 -11.5 -18 15.5 1.5 -11.5 -19.5 15 1.5 -11.5 -21 15 1.5 -12 -22.5 15 1.5 -13 -23.5 16 1.5 -14 -23 16 1.5 -14 -24.5 16 1.5 -15.5 -26 17 1.5 -15.5 -28 15.5 1.5 -15.5 -28.5 15.5 1.5 2 10 -15.5 -28.5 15.5 1.5 -14.5 -30.5 14.5 1.3 -16 -32 14 1.3 -17 -33 16 1.3 -17 -34.5 16 1.3 -17 -35.5 16 1.3 -18.5 -37 14 1.3 -20 -38 14 1.3 -21 -39 12.5 1.3 -21.5 -39.5 12.5 1.3 7 39 -21.5 -39.5 12.5 1.3 -21.5 -40.5 13.5 1 -21.5 -42 13.5 1 -21 -43.5 14 1 -21 -45 14 1 -20 -46 15 0.9 -20.5 -47 15 0.9 -22 -47 15 0.8 -23 -48 15 0.8 -22.5 -49 15 0.8 -23.5 -51 15 0.8 -23.5 -52 15 0.8 -24 -53.5 15.5 0.8 -25.5 -54.5 15.5 0.8 -24.5 -55.5 15.5 0.8 -24 -57.5 14 0.8 -24 -58.5 13 0.8 -24 -58.5 14.5 0.8 -23.5 -61 14 0.7 -23.5 -62.5 15 0.7 -23.5 -64.5 15 0.7 -23.5 -66.5 16 0.7 -23 -67.5 16 0.7 -22 -68.5 16 0.7 -22 -70 15.5 0.7 -22 -72 15.5 0.7 -21 -73 15.5 0.7 -20.5 -73.5 15.5 0.7 -20 -74 15.5 0.7 -20 -75 15.5 0.7 -21.5 -76.5 15.5 0.7 -21.5 -79 17.5 0.7 -22 -80.5 17.5 0.7 -22 -81 17 0.4 -23.5 -82.5 17 0.4 -23.5 -84.5 17 0.4 -24 -85.5 18 0.4 -24.5 -87 18 0.4 -25.5 -89 18.5 0.4 10 55 -21.5 -39.5 12.5 1.3 -22 -39 12 1 -22.5 -39 13 0.7 -23 -39.5 13.5 0.5 -24.5 -40 13 0.5 -26 -40 13 0.5 -28 -39.5 13 0.5 -29.5 -41.5 13 0.5 -29.5 -42.5 13 0.4 -30 -43 13 0.4 -31.5 -43 13 0.4 -32.5 -43.5 14.5 0.4 -33.5 -44 14.5 0.4 -35 -45 14.5 0.4 -35 -47 14.5 0.4 -36 -47 15.5 0.4 -37 -48 15.5 0.4 -39.5 -48 15.5 0.4 -41 -49.5 15.5 0.4 -42 -50 13 0.4 -43.5 -49.5 15.5 0.4 -44.5 -49.5 15.5 0.4 -46 -50.5 15.5 0.4 -46.5 -52 15.5 0.4 -48 -52 15.5 0.4 -49 -53 15.5 0.4 -50 -53.5 15.5 0.4 -52 -53.5 15.5 0.4 -53 -53.5 15.5 0.4 -54.5 -54.5 14.5 0.4 -55.5 -55.5 14.5 0.4 -57.5 -56 14.5 0.4 -58 -56.5 14.5 0.4 -58 -58 14.5 0.4 -58 -59 15 0.4 -58.5 -60 15 0.4 -58.5 -61 15 0.4 -58 -61.5 15 0.4 -58 -63 15 0.4 -58 -64.5 15 0.4 -59 -65 15 0.4 -59.5 -65.5 15 0.4 -59.5 -66 18 0.4 -61.5 -67 15.5 0.4 -60 -69 15.5 0.4 -61 -70 18.5 0.4 -61 -71.5 18.5 0.4 -62.5 -73 19.5 0.4 -64.5 -74.5 19.5 0.4 -65 -76 19.5 0.3 -66 -77.5 19.5 0.3 -67 -78.5 19.5 0.3 -68 -78.5 19.5 0.3 -69 -80.5 17.5 0.3 -69.5 -81.5 17.5 0.3 1 5 -15.5 -28.5 15.5 1.5 -16.5 -28.5 16.5 0.4 -17 -28.5 17 0.4 -17.5 -28.5 17.5 0.3 -18.5 -28.5 16 0.3 1 4 -18.5 -28.5 16 0.3 -18.5 -27.5 15.5 0.3 -18 -26.5 15.5 0.3 -17.5 -26 15.5 0.3 6 31 -18.5 -28.5 16 0.3 -19 -29.5 15.5 0.3 -20 -30 15.5 0.3 -21.5 -30.5 15 0.3 -23 -31 15.5 0.3 -24.5 -31 15.5 0.3 -25 -32 15.5 0.3 -26.5 -32 15.5 0.3 -28 -32.5 15.5 0.3 -31 -32.5 16 0.3 -33 -31.5 16 0.3 -35 -31.5 16 0.3 -37.5 -31 18 0.3 -39.5 -31 17.5 0.3 -41.5 -31 19.5 0.3 -44.5 -30.5 21 0.1 -47.5 -30.5 21 0.1 -48.5 -31.5 18.5 0.1 -50 -32.5 18.5 0.1 -51.5 -33 18.5 0.1 -53.5 -33.5 20 0.1 -54.5 -35 20 0.1 -56 -36 20 0.1 -57.5 -36.5 20 0.1 -58 -37 20 0.1 -59 -38 20 0.1 -60 -38.5 20 0.1 -61 -38.5 20 0.1 -63.5 -39.5 21 0.1 -64 -40 21 0.1 -64 -40 21 0.1 2 11 -8 -6.5 14 2.6 -8 -6.5 13.5 0.4 -10 -6.5 13.5 0.4 -11 -6.5 15 0.4 -11.5 -7 14.5 0.4 -13 -8 14.5 0.3 -15 -9 14.5 0.3 -17 -11 14.5 0.3 -18 -12 14.5 0.3 -21 -11.5 14.5 0.3 -22 -11 14.5 0.5 10 56 -22 -11 14.5 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0.5 0.2 -45.5 90.5 0.5 0.2 -46.5 91.5 -1 0.2 -47 93.5 -1 0.2 -47 95 0.5 0.2 -47.5 96 -2 0.2 CONNECTIONS: 0 1 0 1 2 1 2 1 0 1 1 1 2 1 3 1 3 1 2 1 1 1 0 1 0 1 1 1 2 1 3 1 4 1 4 1 3 1 2 1 8 1 9 1 9 1 8 1 12 1 12 1 1 1 15 1 15 1 0 1 0 1 0 1 0 1 0 1 /*----------------------------------------------------------------*/ proc geometry() { /* NULL geometry procedure: keeps the user from calling the geometry procedure in isolation. */ printf("\nYou must re-read the entire geometry\n") printf("file to execute geometry().\n\n") }