/*---------------------------------------------------------------- %W% %G% lws9287i.asc translated Tue Dec 17 10:29:50 1996 by ntscable 2.0 source file syntax: Eutectic output file syntax: CABLE soma: diameter = 13.9914 um length = 31.2267 um area = 1372.57 um2 25 three-D points; 30 outline points numbered 1-30 outline diameter = 20.9625 um 4 primary neurites 27 branches totaling 2511.52 um in length, 5370.5 um2 in area 747 tree points translated to 277 segments (1 requested) Neurites divided into segments of equal dx between adjacent digitized branch points. Segment length constrained to be < 10 um. No. points 777 No. trees 5 Text NOT ASSIGNED ----------------------------------------------------------------*/ /* create sections */ create soma,\ dend1[5],\ dend2[5],\ dend3[3],\ dend4[37] /*----------------------------------------------------------------*/ proc geometry() { local i, j /* soma geometry */ soma { nseg = 1 pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } /* connect primary neurites */ soma connect dend1[0] (0), 0.5 soma connect dend2[0] (0), 0.5 soma connect dend3[0] (0), 0.5 soma connect dend4[0] (0), 0.5 /* neurite geometry*/ for i = 0,4 { dend1[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,4 { dend2[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,2 { dend3[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,36 { dend4[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } /* branching topology*/ for i = 1,4 { dend1[fscan()] connect dend1[i] (0), fscan() } for i = 1,4 { dend2[fscan()] connect dend2[i] (0), fscan() } for i = 1,2 { dend3[fscan()] connect dend3[i] (0), fscan() } for i = 1,36 { dend4[fscan()] connect dend4[i] (0), fscan() } } geometry() SOMA COORDINATES AND DIAMETERS: 25 -17 11.5 1.5 0 -17 10 2 3.1623 -16 9.25 2 8.7321 -15 9.25 2.75 11.511 -14 8.875 2.375 13.77 -13 9 2.25 15.008 -11 8.9 2.45 16.824 -10.5 8.9 2.5 17.229 -10 9.55 2.25 18.907 -8.5 9.625 1.5 20.275 -8 9.75 1.125 20.538 -5.5 9.25 0.5 19.5 -3 8.7917 0.66667 19.462 -2.5 8.8333 1 19.692 -1.5 9.3333 1.5 19.333 -1 9.3125 1.5 18.625 0.5 8.75 1.5 17.5 0.5 8.875 0.75 17.315 1.5 9.375 0.25 17.257 2 8.875 -0.25 15.758 2.5 8.5 -1.125 14.02 3 8.125 -1.5 12.25 3.5 7.6667 -1.5 10.667 4.5 5 -1.75 4.0311 4.5 7 -2 0 NEURITE COORDINATES AND DIAMETERS: 2 4 -11.5 2.5 10 1.8 -12 -0.5 9 1.6 -12.5 -4.5 11.5 1.4 -12.5 -8 11 1.4 1 3 -12.5 -8 11 1.4 -10.5 -9 10.5 0.4 -9.5 -8.5 11 0.4 3 12 -12.5 -8 11 1.4 -12 -9.5 11 1.1 -12.5 -11 12.5 1.1 -13.5 -13.5 12 1.1 -15 -14.5 14.5 1.1 -16.5 -16.5 15.5 1.1 -17 -18.5 16.5 0.8 -18 -20 16.5 1 -20.5 -23 16.5 1 -20.5 -25.5 18 0.9 -22 -28 18.5 0.9 -21.5 -30 17.5 1.6 6 22 -21.5 -30 17.5 1.6 -20 -33 17 0.7 -19.5 -34.5 15 0.7 -20.5 -37 15.5 0.5 -22 -38.5 15 0.5 -23.5 -40 15 0.5 -25.5 -40 15 0.5 -27 -43.5 15 0.5 -27 -47 15 0.4 -28.5 -50 15.5 0.4 -29.5 -53.5 15.5 0.4 -29.5 -55.5 16 0.4 -30.5 -59 16 0.3 -31.5 -61 16.5 0.3 -33 -62.5 17 0.3 -33.5 -64.5 19 0.3 -35 -65.5 19 0.3 -36.5 -67 18.5 0.3 -39.5 -68.5 18.5 0.3 -41 -69.5 19 0.3 -42 -73 19 0.3 -44 -75 19 0.3 3 12 -21.5 -30 17.5 1.6 -24 -31.5 17 0.7 -26.5 -32 17 0.7 -29 -34 17 0.5 -32 -35.5 17 0.5 -34 -36.5 16.5 0.5 -36 -36.5 16.5 0.3 -39.5 -36.5 16.5 0.3 -42 -36.5 16.5 0.3 -44 -37.5 18.5 0.3 -45 -39 18.5 0.3 -46 -41.5 18.5 0.3 4 12 -17.5 8 3.5 2 -19.5 7.5 5.5 1.6 -22 7 6.5 1.6 -25.5 5.5 7 1.6 -27.5 3.5 8 1.6 -30 2 9.5 1.6 -32.5 0 9.5 1.4 -36.5 -1.5 11 1.4 -38.5 -2 12 1.4 -41.5 -2 14 1.4 -44 -2.5 13.5 1.4 -47.5 -2.5 14 1.7 3 8 -47.5 -2.5 14 1.7 -48.5 -4.5 14 1.2 -50.5 -5.5 14 1 -53 -6.5 15 1 -57.5 -6.5 16 1 -61.5 -7 17 1 -65.5 -8 18 1 -68 -8 18 1.4 1 6 -68 -8 18 1.4 -69.5 -8.5 19 0.5 -70.5 -10.5 19 0.5 -72.5 -11.5 19 0.5 -73.5 -10.5 20.5 0.5 -74.5 -10.5 20.5 0.5 4 14 -68 -8 18 1.4 -71.5 -5.5 17 0.5 -74.5 -5 18 0.5 -76.5 -5 18 0.5 -77 -4 20 0.4 -79.5 -3 20 0.4 -81 -5.5 20.5 0.4 -82.5 -6.5 18.5 0.4 -84 -8.5 18.5 0.4 -86 -10 18.5 0.4 -87.5 -11 18.5 0.4 -89 -12.5 18.5 0.4 -91 -13.5 18.5 0.4 -93.5 -12.5 18.5 0.4 4 11 -47.5 -2.5 14 1.7 -49 -2 12.5 0.6 -52 1 13.5 0.6 -54 2.5 15 0.6 -56.5 3 15 1 -59 4 15 0.7 -61.5 6 17 0.7 -64.5 7 17 0.7 -67 8.5 17 0.7 -67.5 9.5 20 0.5 -70 12.5 20 0.4 4 10 1.5 16 -1.5 2 3 16 -3 1.3 5 17 -3 0.9 7 20 -3 0.9 9 23.5 -3 0.9 12 26.5 -1.5 0.7 14 29 -1 0.7 15 32.5 -1.5 0.7 16.5 36 -2 0.5 18 39 -1 0.5 8 18 18 39 -1 0.5 16.5 41 -2.5 0.3 15 46.5 -2.5 0.3 14.5 51 -1 0.3 13 54.5 -1 0.3 12 59 -1 0.3 11 64.5 -1 0.3 10 66 -1 0.3 10 70 -1.5 0.3 9 75 -3 0.3 9 80.5 -1.5 0.3 8 86 -1 0.3 6.5 89.5 -0.5 0.3 6 94.5 0 0.3 5 98 0 0.3 4 104 1 0.3 2 110 -0.5 0.3 2 111 -2 0.3 8 19 18 39 -1 0.5 18.5 39 -1.5 0.3 20.5 42 -1.5 0.3 21 45 -1.5 0.3 21.5 47.5 -2.5 0.3 22.5 52 -3 0.3 23.5 55 -3 0.3 24.5 57.5 -2.5 0.3 25.5 61 -2.5 0.2 27 64.5 -2 0.2 28 68.5 -2 0.2 31 73 -1.5 0.2 33.5 79.5 -1.5 0.2 34 87.5 -1.5 0.2 36.5 94 -1.5 0.2 39 97 -1 0.2 41.5 100 -3.5 0.2 45.5 100.5 -3.5 0.2 47 100 -3 0.2 2 3 -0.5 3.5 14.5 7.4 2 0 17 6.7 6 -4.5 19 7.4 2 4 6 -4.5 19 7.4 10 -2 18.5 1.6 16 2.5 19 1.6 17.5 3.5 19 1.6 11 32 17.5 3.5 19 1.6 19 6.5 15.5 0.6 19 12 15.5 0.6 20 14 15.5 0.6 19.5 17 16 0.6 20 21.5 16.5 0.6 22 24.5 15.5 0.4 22 27.5 16.5 0.4 24 30.5 16.5 0.4 25 36 15.5 0.3 26 40 15.5 0.3 27 43 15.5 0.3 28.5 47 18 0.2 29 50 17.5 0.2 29 53 17 0.2 31 55.5 17 0.2 33 58 17 0.2 34.5 59.5 17 0.2 34.5 63 17.5 0.2 35 65 18 0.2 38 68.5 18 0.2 39 71.5 18.5 0.2 39 74 18.5 0.2 40.5 74 19.5 0.2 43 73.5 19.5 0.2 44.5 73.5 19.5 0.2 47.5 74 19.5 0.2 49 76.5 20 0.2 52 77 20.5 0.2 52.5 78 20.5 0.2 55.5 78 20.5 0.2 57.5 81 19.5 0.2 11 25 17.5 3.5 19 1.6 19 2.5 15.5 1 23 2 15.5 1 28 3.5 16 1 34 4.5 15.5 1 37.5 3 15 1 41 4 15.5 1 44 4 14.5 0.9 49 4 14.5 0.9 53 5 14.5 0.9 56.5 6 14.5 0.8 60 8 17.5 0.8 64.5 10.5 17 0.6 68 13 17 0.6 71 15.5 16.5 0.6 75 19.5 16.5 0.4 78 23 17 0.4 80 26 17.5 0.4 82.5 27.5 18 0.4 86 31.5 18 0.4 86 34.5 17 0.4 89.5 37.5 17 0.4 91 40 16.5 0.4 92 43.5 17 0.4 94 45.5 18 0.4 2 5 6 -4.5 19 7.4 6 -8 18.5 6.5 7.5 -11.5 19 6.4 9.5 -14.5 18 6.5 9.5 -19 18.5 6.4 2 4 9.5 -19 18.5 6.4 6 -23 18.5 1.9 4 -24.5 18.5 1.9 1 -27 17.5 1.9 7 21 1 -27 17.5 1.9 1.5 -30 18 1.8 1 -32.5 19 1.8 0 -34.5 16.5 1.8 0 -37 16.5 1.4 -3 -41 18 1.4 -5.5 -44 19 1.4 -6 -48 18.5 1.4 -7.5 -50.5 19 1.4 -10 -52.5 19 1.3 -11.5 -54.5 19 1.1 -12.5 -57.5 19 1.2 -14.5 -60 19 1.2 -16.5 -62.5 20.5 0.9 -18.5 -66 21.5 0.9 -20.5 -68.5 21.5 0.9 -24 -69.5 21.5 0.9 -26 -71 20.5 0.9 -28.5 -73 21 0.9 -30.5 -74.5 21 0.9 -33 -79 21 0.9 7 21 -33 -79 21 0.9 -32.5 -80.5 20.5 0.4 -34 -85 21 0.4 -34.5 -89 21.5 0.3 -35 -92 22 0.3 -35.5 -93 20.5 0.3 -35.5 -97 20.5 0.3 -37 -100 20.5 0.3 -38.5 -102.5 20.5 0.3 -39.5 -104.5 20.5 0.3 -39 -109 20.5 0.3 -41 -111 20.5 0.3 -42 -113.5 21 0.3 -42 -116 21 0.3 -41 -118 21 0.3 -42 -121 19 0.3 -43 -122.5 19 0.3 -43 -126 17.5 0.3 -44 -130 17 0.3 -45 -133 17 0.3 -45.5 -136.5 16 0.3 4 12 -33 -79 21 0.9 -35 -78.5 20.5 0.5 -36 -80 20.5 0.5 -38 -81.5 21 0.5 -41 -83.5 21 0.5 -45.5 -86 21 0.5 -50 -88.5 21.5 0.5 -52.5 -92.5 22.5 0.5 -56 -95.5 23 0.5 -59 -98 22 0.3 -60 -102 22 0.3 -60 -102 21 0.3 2 5 -60 -102 21 0.3 -60.5 -106 21 0.3 -59.5 -109 22.5 0.3 -59.5 -111.5 22.5 0.3 -62 -116.5 22.5 0.3 5 15 -60 -102 21 0.3 -60.5 -102 21.5 0.3 -64 -104.5 21.5 0.3 -66.5 -107.5 21.5 0.3 -69 -111.5 21.5 0.3 -72 -113 21.5 0.2 -75.5 -114 21.5 0.2 -77 -115.5 21.5 0.2 -80 -115.5 21.5 0.2 -80.5 -117.5 22.5 0.2 -82.5 -118.5 22.5 0.2 -85.5 -123 23 0.2 -88.5 -124 23.5 0.2 -95 -125.5 23.5 0.2 -97.5 -125 23.5 0.2 10 28 1 -27 17.5 1.9 0.5 -28 17 0.8 -2.5 -29.5 17.5 0.8 -5 -31.5 17.5 0.6 -6.5 -33 17 0.5 -9.5 -35.5 17.5 0.5 -12 -38 18.5 0.5 -14.5 -40.5 19 0.5 -18 -42.5 20 0.5 -20.5 -42 20.5 0.2 -27 -38.5 21.5 0.2 -30.5 -38.5 21.5 0.2 -33 -38.5 21.5 0.2 -35.5 -38.5 21.5 0.2 -38.5 -38.5 22 0.2 -41.5 -39.5 22 0.2 -44 -39 22 0.2 -47 -40 22 0.2 -49 -38.5 22 0.2 -51 -36.5 22 0.2 -57 -36.5 22 0.2 -58.5 -35.5 22 0.2 -59 -33 21.5 0.2 -59.5 -29 21.5 0.2 -59.5 -25.5 21.5 0.2 -67.5 -23.5 21.5 0.2 -70.5 -20.5 21.5 0.2 -72 -21 21.5 0.2 3 7 9.5 -19 18.5 6.4 12 -21.5 17 5.4 16 -25 17.5 4.5 16.5 -28.5 17.5 4.5 17.5 -31.5 17.5 4.5 19 -34 17 4 19.5 -36 17 4 1 4 19.5 -36 17 4 21.5 -37 17 3.1 26 -38.5 15 2.7 26 -40 15.5 2.8 12 32 26 -40 15.5 2.8 29.5 -38 13.5 0.7 33 -37.5 15 0.7 37 -36.5 14.5 0.5 42 -34 15.5 0.5 46 -33.5 15.5 0.5 50.5 -33.5 16.5 0.4 54.5 -33.5 16.5 0.4 56.5 -33.5 16 0.4 60.5 -32 16 0.4 63.5 -31 17 0.4 69.5 -31 15 0.4 73 -31 15 0.4 75.5 -30.5 15 0.4 78 -28.5 17 0.2 82 -27.5 16 0.2 87 -26 15.5 0.2 90 -25 15.5 0.2 93 -24.5 15.5 0.2 95 -25.5 16 0.2 99 -24.5 16 0.2 100.5 -27 16 0.2 105.5 -28 14 0.2 107.5 -30 13.5 0.2 109 -33 13.5 0.2 112 -33 14 0.2 115 -34 14 0.2 117.5 -37 16 0.2 117.5 -39.5 16 0.2 119 -41.5 16 0.2 119.5 -45 16 0.2 120 -48 16 0.2 1 3 26 -40 15.5 2.8 27.5 -42 15.5 3 27.5 -45 16 3 3 9 27.5 -45 16 3 31 -45 16 1.7 33.5 -45.5 16 1.7 36.5 -46.5 16 1.7 38 -48 16 1.7 40 -48.5 16 1.7 41.5 -50.5 17.5 1.7 44 -52 16 1.7 44 -54 16 1.7 3 7 44 -54 16 1.7 47 -53.5 18 0.3 52.5 -51 18 0.3 54.5 -50.5 18.5 0.3 58 -50.5 16.5 0.3 62 -50.5 19 0.3 65.5 -50 18.5 0.3 4 17 44 -54 16 1.7 44.5 -56 17 1.7 43.5 -57.5 17 1.4 43.5 -60 17 1.4 44.5 -61.5 17 1.4 45.5 -64 17 1.4 44 -65.5 16.5 1.4 43.5 -67.5 16.5 1.4 45 -69 16.5 1.4 46 -70.5 17 1.4 45.5 -72.5 17 1.4 44.5 -73.5 16.5 1.4 43.5 -75 17 1.3 43 -77.5 16 1.3 45.5 -78 15 1.3 48 -79 14.5 1 48 -80.5 15 1 3 10 48 -80.5 15 1 50.5 -81 14.5 0.6 53.5 -81 14 0.6 55 -80.5 14.5 0.6 59 -81.5 14.5 0.6 61 -81.5 16 0.3 64 -81.5 14.5 0.2 68 -81 13.5 0.2 69.5 -81.5 14 0.2 71.5 -83 14 0.2 1 5 71.5 -83 14 0.2 73 -81 15 0.2 75 -79.5 15.5 0.2 77.5 -80 15.5 0.2 79 -80 15.5 0.2 6 18 71.5 -83 14 0.2 72.5 -84.5 14 0.2 75.5 -85 14 0.2 78 -85 14 0.2 79.5 -86 14 0.2 83.5 -87 14.5 0.2 86.5 -87.5 14.5 0.2 88 -89.5 14.5 0.2 90.5 -90 15 0.2 93.5 -92.5 14.5 0.2 98 -96.5 15 0.2 101 -99.5 14.5 0.2 104 -98 14.5 0.2 107 -95.5 14.5 0.2 109 -102.5 14.5 0.2 112 -104.5 15 0.2 115 -106.5 16.5 0.2 115.5 -108.5 16.5 0.2 5 19 48 -80.5 15 1 46.5 -82.5 16.5 0.8 47 -85.5 16.5 0.8 47 -89 16.5 0.8 46 -91.5 16.5 0.8 48 -94 18 0.8 51 -94.5 17.5 0.8 52.5 -96.5 17.5 0.8 52.5 -100 17 0.8 53.5 -101.5 19 0.7 55.5 -103 19 0.7 58 -104 19.5 0.7 60 -104.5 17.5 0.7 62 -106.5 17.5 0.7 60.5 -108.5 18 0.7 61 -110.5 17 0.7 63 -111.5 16 0.7 64.5 -113 16 0.7 64.5 -114 16 0.7 4 15 64.5 -114 16 0.7 66.5 -114.5 16 0.4 68 -116.5 16 0.4 70.5 -116.5 16 0.3 74 -118.5 16.5 0.3 75.5 -119.5 16.5 0.3 78 -119.5 16.5 0.3 79 -122 16.5 0.3 82.5 -122 16.5 0.3 86 -123 16.5 0.3 88.5 -123 16.5 0.3 90.5 -124 16.5 0.3 90.5 -126.5 16.5 0.3 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-79 17.5 1.2 22.5 -81.5 18 1.2 21.5 -84 18 1.2 19.5 -86 18.5 1.2 20 -89.5 17 1.2 21 -92 17.5 1.2 21.5 -94 17.5 1.2 18.5 -97.5 17.5 1.2 19 -99.5 17.5 1.2 21 -100 17.5 1.2 22 -103 17.5 1.2 20.5 -106 17 1.2 22 -109 17.5 1.2 22 -110 16 1.4 22 -112.5 17 2 4 11 22 -112.5 17 2 24.5 -113.5 16.5 0.6 26.5 -116 16.5 0.6 28.5 -118.5 19.5 0.6 30 -120.5 17 0.6 35 -121.5 17.5 0.6 36.5 -124 17.5 0.6 37.5 -127 16.5 0.6 40 -128.5 16.5 0.6 39 -130 16.5 0.6 39 -131.5 16.5 0.6 7 20 39 -131.5 16.5 0.6 40.5 -134.5 16.5 0.3 42.5 -139 16.5 0.3 45 -143 17 0.3 47 -147 16.5 0.3 46.5 -150.5 19 0.3 46.5 -152.5 15 0.3 49.5 -154.5 13 0.3 49.5 -157 13 0.3 49.5 -162.5 13.5 0.3 52 -163.5 13.5 0.3 54.5 -165 13.5 0.3 55 -167.5 14.5 0.3 53.5 -170.5 14.5 0.3 53 -172.5 15 0.3 52.5 -174.5 16 0.3 50 -177 16.5 0.3 48.5 -179.5 16 0.3 45.5 -181 15.5 0.3 45 -184 15.5 0.3 13 32 39 -131.5 16.5 0.6 35.5 -135 16.5 0.5 38 -137.5 16.5 0.5 39 -142 15 0.5 38 -144.5 15.5 0.5 37 -147 16 0.3 37.5 -150.5 16.5 0.3 37.5 -154.5 16.5 0.3 40.5 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-144 18.5 0.3 -16.5 -145.5 18 0.3 -16 -148 17 0.3 -16.5 -150.5 17 0.3 -16.5 -152.5 17.5 0.3 -15 -154 17.5 0.3 -16.5 -158 17.5 0.3 -18.5 -162 17.5 0.3 -17 -163.5 17.5 0.3 -15 -168.5 18 0.3 -16 -170.5 18.5 0.3 -16 -173.5 18.5 0.3 -15.5 -176 18 0.3 -15 -182 19.5 0.3 -19 -193 18.5 0.3 -19.5 -196 18.5 0.3 -20 -200 19 0.3 -20 -205.5 18 0.3 -17 -208 19 0.3 -17 -211 19.5 0.3 -18 -214 19.5 0.3 -18.5 -217 19.5 0.3 -20 -221.5 19.5 0.3 -18 -224.5 19.5 0.3 -17.5 -228.5 18.5 0.3 -16.5 -233 18.5 0.3 -16.5 -235.5 19 0.3 -16 -240 18 0.3 -15 -241.5 18 0.3 5 16 -24.5 -129 20.5 0.6 -26.5 -130.5 20 0.3 -29.5 -132 20 0.3 -32 -130.5 20 0.3 -35.5 -129.5 18.5 0.2 -36 -127 20 0.2 -37.5 -126 21 0.2 -38 -123.5 21.5 0.2 -38 -119.5 19.5 0.2 -38 -117 21 0.2 -41 -114.5 21 0.2 -42 -112 22 0.2 -41 -109 22.5 0.2 -41.5 -107 22.5 0.2 -43.5 -105 22.5 0.2 -44 -103.5 22.5 0.2 CONNECTIONS: 0 1 0 1 2 1 2 1 0 1 1 1 1 1 0 1 0 1 0 1 0 1 1 1 1 1 0 1 4 1 5 1 6 1 6 1 8 1 8 1 5 1 4 1 12 1 13 1 13 1 15 1 16 1 16 1 18 1 19 1 19 1 18 1 22 1 22 1 15 1 25 1 26 1 26 1 25 1 12 1 30 1 30 1 32 1 32 1 34 1 34 1 /*----------------------------------------------------------------*/ proc geometry() { /* NULL geometry procedure: keeps the user from calling the geometry procedure in isolation. */ printf("\nYou must re-read the entire geometry\n") printf("file to execute geometry().\n\n") }