/*----------------------------------------------------------------
%W% %G%
lws9287j.asc translated Tue Dec 17 10:29:52 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 16.497 um length = 26.0118 um area = 1348.11 um2
24 three-D points; 26 outline points numbered 1-26
outline diameter = 20.6835 um
4 primary neurites
16 branches totaling 1979.7 um in length, 4273.08 um2 in area
531 tree points translated to 212 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 557
No. trees 5
Text NOT ASSIGNED
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[1],\
dend2[3],\
dend3[5],\
dend4[19]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
/* neurite geometry*/
for i = 0,0 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,2 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,4 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,18 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,0 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,2 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,4 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,18 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
24
-16.5 7 3 0
-16 5.25 2.5 7.5664
-16 3.75 2.25 10.607
-15 4.4167 2.25 15.241
-14.5 4.5 2.125 17.046
-14 4.5 2.125 19.015
-13.5 4.3333 2.3333 20.677
-12.5 4.7 2.4 22.632
-11 4.625 1.875 24.262
-10.5 4.65 1.75 24.705
-9 3.6 2 23.821
-8.5 3.4286 1.8929 23.87
-5.5 3 0.82143 23.003
-5 2.9167 0.66667 22.836
-4 3.375 0.5 21.25
-3 3.9167 0.66667 19.836
-2.5 4.875 0.75 17.757
-1 5.875 0.625 15.35
-0.5 5.9167 0.5 13.977
0 6.0833 0.75 12.259
0 7.3333 1.25 9.6796
0 8.0833 0.75 8.3033
0.5 8.75 0.75 5.7009
1 9.5 0 0
NEURITE COORDINATES AND DIAMETERS:
20 70
-12 -1.5 -2 1.8
-13.5 -2 -2.5 1.4
-14.5 -3 -3 1.1
-17 -4.5 -2.5 0.9
-18.5 -4.5 -1.5 1.1
-20.5 -3.5 -1 1.1
-23.5 -2 -1 1.1
-25 -1.5 0 1
-27 -0.5 0 1
-29 0 -0.5 0.8
-33 1.5 0 0.6
-36.5 1 0 0.6
-39 2 0 0.5
-40.5 2 1 0.4
-44 2 0.5 0.2
-46.5 2 0.5 0.2
-48 4 1 0.2
-51 4.5 1 0.2
-53 5.5 -0.5 0.2
-55 5 -0.5 0.2
-58.5 6 -0.5 0.2
-61.5 5 -0.5 0.2
-65 5 -2 0.2
-68.5 4.5 -1 0.2
-71 5 -1 0.2
-73.5 4.5 -1 0.2
-76.5 4.5 -1 0.2
-79.5 4 -2 0.2
-81.5 4.5 -2 0.2
-84 6.5 -2 0.2
-85.5 5.5 -2 0.2
-87 3 -2 0.2
-88.5 1 -1.5 0.2
-89.5 3.5 -3 0.2
-92.5 3 -3 0.2
-93 5 -2 0.2
-95 3.5 -2 0.2
-96.5 6 -2.5 0.2
-99.5 6.5 -3 0.3
-102 7 -3 0.3
-103 5.5 -3 0.3
-104 7.5 -3 1.3
-106.5 6.5 -3 0.5
-110.5 6.5 -3 0.5
-111.5 8.5 -3 1.2
-115 9 -3.5 0.4
-117.5 8 -3.5 0.4
-121 8.5 -3.5 0.4
-123 9.5 -3.5 0.4
-125.5 8 -3.5 0.4
-128.5 7.5 -3.5 0.4
-131 9 -3.5 0.5
-132.5 12 -3.5 0.5
-135 12 -3.5 0.5
-136.5 10.5 -3.5 0.5
-141.5 11.5 -3.5 0.5
-144 11.5 -3.5 0.5
-145 13.5 -3.5 0.9
-147 11.5 -3 0.5
-148.5 10.5 -3 0.5
-151 11.5 -2 0.5
-153 13 -2 0.5
-155.5 12 -1.5 0.5
-157.5 12.5 -1.5 0.5
-159 11 -3 0.5
-162.5 11 -3 0.5
-166 11 -3 0.5
-168.5 9.5 -3 0.5
-171 7.5 -3 0.5
-174 8.5 -2.5 0.6
2 8
-10 14.5 5 1.8
-11 16 5 0.8
-11 17.5 6 0.6
-10.5 21 6 0.4
-10.5 23 5.5 0.7
-11 25.5 8 0.7
-11.5 28 8 0.7
-11 30 7 0.5
9 21
-11 30 7 0.5
-14 33.5 5 0.3
-15.5 35.5 5 0.3
-16 37.5 6 0.3
-19 39 6 0.3
-21 41.5 8 0.2
-26 46 8 0.2
-28 47.5 8 0.2
-28.5 50 8.5 0.2
-31 52 8.5 0.2
-35 50 8.5 0.2
-38.5 48 8.5 0.2
-41.5 44 8.5 0.2
-43 39 9.5 0.2
-42.5 36.5 9 0.2
-45 34 9 0.2
-47.5 29.5 9 0.2
-51 22 9.5 0.2
-53 19.5 9.5 0.2
-55.5 15.5 8.5 0.2
-58 16 8.5 0.2
10 22
-11 30 7 0.5
-8 33 7.5 0.2
-6.5 34 11.5 0.1
-5.5 37.5 11.5 0.1
-3 39.5 11.5 0.1
-0.5 43 11.5 0.1
1 46 11.5 0.1
4.5 48.5 11.5 0.1
6.5 53 12 0.1
8 55 10.5 0.1
10.5 59 10.5 0.1
10 62.5 10.5 0.1
13 67.5 10.5 0.1
11.5 70 9 0.1
12 72.5 9.5 0.1
12.5 74 9.5 0.1
14 79 11 0.1
13.5 88 12 0.1
15 93 12 0.1
15 97.5 10 0.1
16 103 10 0.1
18.5 106 10 0.1
2 8
0 12.5 2 1.8
2 14 3 1.2
4.5 16 2.5 1.2
6.5 17 4.5 1.2
9 18 6 1.2
10 19 5 1.4
11 20.5 5.5 1.4
12 21 6 1.4
5 15
12 21 6 1.4
13 23.5 6 0.2
14 26 6 0.2
17 28 6.5 0.2
16.5 31 6.5 0.2
19 30.5 7.5 0.2
18 33 6.5 0.2
19.5 35 8 0.2
19.5 38.5 7.5 0.2
22.5 42.5 8.5 0.2
28.5 41.5 8.5 0.2
32 41.5 8.5 0.2
33.5 45 7.5 0.2
33.5 47.5 7.5 0.2
36.5 50 7.5 0.2
6 20
12 21 6 1.4
13 21 7.5 1
15.5 21 9 1
17 23.5 9 1
20.5 24 8.5 1
23 21.5 10 1
25 22 10.5 1
27 21 9.5 0.8
29 20 8.5 0.8
32 19.5 9.5 0.8
33.5 21 10 0.8
35 22.5 8 0.6
37.5 21.5 8 0.6
38.5 20 8 0.6
40.5 22 8 0.6
42 23.5 8 0.6
45 22 9.5 0.6
47 24 9.5 0.6
49 24.5 9 0.6
51 26.5 9 0.6
6 13
51 26.5 9 0.6
52 28.5 10.5 0.2
53.5 31.5 10.5 0.2
55 34 9 0.2
56.5 38.5 8.5 0.2
57 43 8.5 0.2
58 47.5 8 0.2
58 52 8 0.2
60 56.5 10 0.2
60 60 10 0.2
61 64.5 7.5 0.2
61.5 73.5 11 0.2
61.5 79 14 0.2
10 31
51 26.5 9 0.6
53 23.5 9 0.7
54 24.5 11.5 0.7
56.5 26 11.5 0.3
58.5 23.5 11 0.3
62 23.5 11 0.3
64.5 23.5 11 0.2
65.5 21 12 0.2
68 19.5 11.5 0.2
70 17.5 11.5 0.2
72 17 11.5 0.2
73.5 15.5 11.5 0.2
76.5 14 11.5 0.2
79 14 12.5 0.2
82 13.5 11.5 0.2
84.5 9.5 11.5 0.2
90.5 14.5 14 0.2
93.5 15 13.5 0.2
94 16 15.5 0.2
96 17.5 17.5 0.2
100 18 17.5 0.2
104 18.5 17.5 0.2
106.5 21 17 0.2
105.5 25 17.5 0.2
109 25 17.5 0.2
111.5 25.5 17.5 0.2
112.5 27.5 18.5 0.2
115 28.5 18.5 0.2
117.5 31.5 17 0.2
120.5 32 17 0.2
121 33.5 19.5 0.2
4 11
-2.5 -3 4.5 6.4
-0.5 -4.5 5.5 6.1
3 -7.5 5 6.5
5 -9.5 5 7
7 -11.5 6.5 7
9 -13 7.5 5.3
11 -14 9 4.6
10.5 -17 10 3.5
11.5 -19.5 10.5 3.5
14 -20 10 4.8
19.5 -20.5 10.5 7.4
4 12
19.5 -20.5 10.5 7.4
23 -21.5 11 5.3
26 -22.5 11 4.1
28.5 -22.5 11.5 4.1
30.5 -22 12.5 3.7
34 -22.5 12.5 4.6
36.5 -21.5 12.5 4.6
41 -21.5 11.5 3.5
44 -19 13 3.1
47 -20 12.5 3.6
49.5 -22 13 3.6
53 -22 12.5 3.3
9 24
53 -22 12.5 3.3
53 -25.5 12.5 2.9
55.5 -29 13.5 2.7
57.5 -30.5 12 2.6
61.5 -30.5 12.5 2.6
62.5 -33.5 12 2.9
66.5 -32.5 10.5 2.3
68.5 -30 11 2.3
71.5 -31.5 11 2.3
73.5 -32.5 11 2.3
76 -31 11 2.3
78.5 -33 11.5 2.3
81.5 -32.5 11.5 2
83.5 -33.5 11.5 2
85.5 -34 11.5 2
89 -34 12.5 2
93.5 -34 13.5 2
94.5 -36.5 13.5 2
94 -40 13.5 2
93.5 -45 13.5 2
94 -48 13.5 2
94 -52 13 2
93 -55.5 12.5 2
94.5 -59.5 15.5 2
8 27
94.5 -59.5 15.5 2
97 -60 15.5 0.8
99.5 -58.5 16.5 0.8
102 -58.5 16.5 0.8
104.5 -58.5 15 0.8
106.5 -56.5 17 0.8
109 -56 17.5 0.8
111 -56.5 17.5 0.8
113 -57.5 18 0.8
115 -55.5 18 0.8
116.5 -54 18.5 0.8
119 -54 18.5 0.8
120 -56.5 17 0.6
123.5 -54 18.5 0.6
127 -54 18.5 0.6
128 -57 15 0.6
130 -58.5 18.5 0.6
132 -60 17.5 0.6
133 -62.5 17.5 0.6
135 -63.5 15 0.6
137 -65 15 0.6
138.5 -68.5 15 0.6
140 -72.5 13.5 0.6
142.5 -73.5 14.5 0.6
146.5 -73.5 14.5 0.6
148 -72 15 1
148.5 -70.5 13.5 1
9 22
148.5 -70.5 13.5 1
148.5 -68 14.5 0.3
148.5 -64 14.5 0.3
150.5 -60 14 0.3
151 -57 14 0.3
151.5 -53 14 0.3
157.5 -51 14 0.3
161.5 -44 14.5 0.3
165.5 -42 15 0.3
167 -38 15 0.3
169.5 -35.5 15 0.3
173 -35.5 15 0.3
177 -37 13.5 0.3
178.5 -36 16 0.3
181 -35 17.5 0.3
183 -31.5 16.5 0.3
184 -28.5 18.5 0.3
187 -27.5 18 0.3
189.5 -25.5 19 0.3
191.5 -22 19 0.3
195.5 -21 19.5 0.2
197 -20.5 14 0.2
14 30
148.5 -70.5 13.5 1
151.5 -68 16.5 0.3
156 -67 16.5 0.3
159 -65.5 15.5 0.3
162 -65.5 15.5 0.3
163.5 -67.5 16 0.3
167 -67 16 0.3
171 -67 16.5 0.3
172 -65 16.5 0.3
176 -63.5 16.5 0.3
177.5 -60.5 16.5 0.3
179.5 -58 16.5 0.3
183.5 -53.5 16.5 0.3
187.5 -51 18 0.3
188 -48.5 18 0.3
190 -46 17 0.3
193 -42.5 17 0.3
196 -38.5 16.5 0.3
201 -35 18.5 0.3
202 -30.5 18 0.3
206 -30 18 0.3
211 -24 18 0.3
215 -22.5 18 0.3
221 -18.5 16 0.3
224 -14 16 0.3
230.5 -8 16 0.3
238 -7 16.5 0.3
238.5 -2 19 0.3
242 2.5 20 0.3
243 2.5 18.5 0.3
3 10
94.5 -59.5 15.5 2
94.5 -61.5 14 1.3
95 -63.5 14 1.4
95.5 -66 14.5 1.4
97.5 -69 14 1.4
98 -71.5 14 1.4
99.5 -74 13.5 1.4
100 -76.5 13.5 1.4
98.5 -79.5 13.5 1.4
99 -81 13 1.4
7 20
99 -81 13 1.4
101 -80 14.5 1.2
103.5 -80.5 15 1.2
104 -82 15.5 1.2
107 -83.5 15 1.2
108.5 -85 15 1.2
109.5 -86.5 15 1.2
112 -85.5 15.5 1.2
113.5 -87 15.5 1.2
115 -88 18 1.2
117.5 -90.5 18.5 1.2
120.5 -90.5 18 1.2
123 -92.5 18 1.2
128 -98 19 1.2
129.5 -101 19 1.2
130 -104 19 1.2
127.5 -107 19.5 1.2
125.5 -111 19.5 1.2
123 -116 19.5 1.2
121 -119 20.5 1.2
9 20
121 -119 20.5 1.2
119.5 -123.5 19 1
119 -128.5 20 1
118.5 -134 20.5 0.9
118 -139 21.5 0.9
117.5 -143.5 20.5 0.9
115.5 -150 20 0.9
115.5 -153.5 19.5 0.5
113 -156 19.5 0.5
113 -158 17.5 0.5
113 -165.5 19 0.5
114 -169.5 19 0.5
115 -173 19 0.4
117 -176.5 19 0.4
116 -179.5 19 0.4
115.5 -182.5 18.5 0.3
117 -186.5 17 0.3
119 -196.5 19 0.3
120 -201.5 19 0.3
120 -202 19 0.3
7 16
121 -119 20.5 1.2
118 -120 20 0.3
114.5 -122 20 0.3
110.5 -126.5 18.5 0.3
108 -129.5 20.5 0.3
106 -134 20.5 0.3
105 -139.5 20.5 0.3
106.5 -144 21 0.3
107.5 -148.5 21 0.3
107 -152.5 20 0.3
107.5 -156 20 0.3
106 -157 21.5 0.3
103 -154 22 0.3
98.5 -153 22.5 0.3
93.5 -153 22 0.3
93.5 -153 22 0.3
11 19
99 -81 13 1.4
97 -84 12.5 0.3
93 -88.5 12.5 0.3
90 -93 12 0.3
89.5 -98 14 0.3
87.5 -103.5 14 0.3
87.5 -108 13 0.3
86 -112 12 0.3
85.5 -114.5 14.5 0.3
85 -119.5 14 0.3
86 -124.5 13.5 0.3
85 -130.5 12 0.3
84.5 -135 12 0.3
79.5 -141.5 11.5 0.3
78 -146.5 11.5 0.3
76 -151.5 11.5 0.3
75.5 -157 9.5 0.3
73.5 -173 10 0.3
73 -181 13 0.3
18 47
53 -22 12.5 3.3
55 -20.5 14.5 0.6
59 -19.5 15 0.6
60.5 -18.5 16.5 0.6
64.5 -18 17 0.6
67.5 -18 17.5 0.6
71 -18.5 16.5 0.6
72.5 -17.5 17.5 0.6
75 -14 17 0.3
76.5 -12 17 0.3
76.5 -8.5 17 0.3
77 -5.5 16 0.3
77.5 -3 16 0.3
78 2 17 0.3
82 4.5 17 0.3
87 7 17 0.3
84 9.5 17 0.3
86.5 12 17 0.3
91 12 17 0.3
93.5 14.5 16 0.3
98.5 16.5 18 0.3
101.5 19 17.5 0.3
108.5 23 18.5 0.3
111.5 24 18.5 0.3
112.5 27 18.5 0.3
116.5 27.5 18.5 0.3
116.5 29.5 18.5 0.3
120.5 29.5 18.5 0.2
123.5 31.5 18.5 0.2
128 31 17.5 0.1
129.5 33 18 0.1
133 31.5 18.5 0.1
136.5 31.5 19 0.1
141 35 22 0.1
145.5 36 22 0.1
149.5 33 22 0.2
150 37.5 22 0.2
153.5 40 20.5 0.2
156.5 44.5 20 0.2
159.5 43.5 20 0.2
162.5 46 20 0.2
164 47 20.5 0.2
164 49.5 20.5 0.2
166 52.5 20.5 0.2
169 54 21 0.2
170 57.5 22.5 0.2
168 58.5 20.5 0.2
2 5
19.5 -20.5 10.5 7.4
21 -29 12 1.5
22 -31.5 12 1.5
23.5 -34.5 10.5 1.5
24 -38.5 10 1.5
2 6
24 -38.5 10 1.5
25.5 -40.5 12 1.3
27 -44 10.5 1.3
28.5 -46.5 10 1.3
29 -48.5 10.5 1.3
30 -50.5 10.5 1.3
7 20
30 -50.5 10.5 1.3
32 -51 10.5 0.5
35 -50.5 10.5 0.5
37 -53.5 8.5 0.5
39 -52.5 8.5 0.3
42 -53.5 9.5 0.3
43.5 -54.5 10 0.3
46.5 -54.5 9 0.3
48.5 -63 11 0.3
50 -66 11 0.3
51.5 -68.5 11 0.3
54.5 -70 11 0.3
57.5 -73 10.5 0.3
60.5 -72.5 10.5 0.3
61 -76 10.5 0.3
65 -75.5 10.5 0.3
65.5 -78 10.5 0.3
69.5 -79 10.5 0.3
69.5 -82 10.5 0.3
70.5 -81.5 10.5 0.3
13 26
30 -50.5 10.5 1.3
28.5 -53 10.5 0.6
27.5 -59 10.5 0.6
26 -64.5 13 0.6
24.5 -67.5 13.5 0.6
24.5 -72 13.5 0.6
24 -76.5 14.5 0.6
25 -80 12.5 0.6
25 -87.5 11.5 0.6
28 -91.5 11.5 0.6
29 -95 11 0.6
27.5 -99.5 11.5 0.6
24 -102.5 14.5 0.6
19 -104.5 14 0.6
17 -107 14 0.3
13.5 -109.5 12.5 0.3
10.5 -112 12.5 0.3
7.5 -116 12.5 0.3
6 -121.5 11.5 0.3
4 -125.5 10.5 0.3
2 -128.5 11.5 0.3
1.5 -134.5 11.5 0.3
-2 -138.5 11 0.3
-4 -146 10.5 0.3
-6.5 -155 10.5 0.3
-8 -158 11 0.3
4 9
24 -38.5 10 1.5
21 -41 11.5 0.5
19.5 -44 11.5 0.5
20 -50 13 0.5
19.5 -54.5 13.5 0.5
15 -57 14.5 0.5
12 -58 12.5 0.5
10 -59 11 0.5
9.5 -62 11 0.4
6 12
9.5 -62 11 0.4
11 -65.5 11 0.3
13 -71.5 12.5 0.3
12 -75 12.5 0.3
8.5 -78 12.5 0.3
4.5 -82.5 11.5 0.3
1 -86 11.5 0.3
-1.5 -88.5 10 0.3
-3.5 -91.5 10 0.3
-8 -91.5 11.5 0.3
-11.5 -95 12.5 0.3
-14 -98.5 12.5 0.3
4 11
9.5 -62 11 0.4
7.5 -64 10.5 0.3
3.5 -67.5 11 0.3
0.5 -74 11 0.3
-3.5 -74.5 11 0.3
-4.5 -78 12.5 0.3
-7.5 -78 12 0.3
-11 -77.5 12 0.3
-12.5 -78 11.5 0.3
-16 -78.5 11.5 0.3
-16 -81 13.5 0.3
CONNECTIONS:
0 1
0 1
0 1
0 1
2 1
2 1
0 1
1 1
2 1
3 1
3 1
2 1
6 1
7 1
7 1
6 1
1 1
0 1
12 1
13 1
13 1
12 1
16 1
16 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}