/*---------------------------------------------------------------- %W% %G% lws9287u.asc translated Tue Dec 17 10:30:00 1996 by ntscable 2.0 source file syntax: Eutectic output file syntax: CABLE soma: diameter = 11.014 um length = 18.4155 um area = 637.203 um2 16 three-D points; 20 outline points numbered 1-20 outline diameter = 15.3787 um 4 primary neurites 19 branches totaling 2249.39 um in length, 4517.41 um2 in area 627 tree points translated to 244 segments (1 requested) Neurites divided into segments of equal dx between adjacent digitized branch points. Segment length constrained to be < 10 um. No. points 647 No. trees 5 Text NOT ASSIGNED ----------------------------------------------------------------*/ /* create sections */ create soma,\ dend1[7],\ dend2[7],\ dend3[11],\ dend4[9] /*----------------------------------------------------------------*/ proc geometry() { local i, j /* soma geometry */ soma { nseg = 1 pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } /* connect primary neurites */ soma connect dend1[0] (0), 0.5 soma connect dend2[0] (0), 0.5 soma connect dend3[0] (0), 0.5 soma connect dend4[0] (0), 0.5 /* neurite geometry*/ for i = 0,6 { dend1[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,6 { dend2[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,10 { dend3[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,8 { dend4[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } /* branching topology*/ for i = 1,6 { dend1[fscan()] connect dend1[i] (0), fscan() } for i = 1,6 { dend2[fscan()] connect dend2[i] (0), fscan() } for i = 1,10 { dend3[fscan()] connect dend3[i] (0), fscan() } for i = 1,8 { dend4[fscan()] connect dend4[i] (0), fscan() } } geometry() SOMA COORDINATES AND DIAMETERS: 16 -4 -7 0.5 0 -3.5 -7.25 1 4.6098 -2 -7.25 0.25 8.5147 -1 -6.1875 0.25 11.386 0.5 -5.9688 0.25 12.947 1.5 -5.6562 0 14.347 2 -5.5833 -0.083333 14.879 3 -5 -0.25 15.075 5 -4.5 -0.45 14.128 5.5 -4.5 -0.54167 14.131 8 -4.25 -0.75 14.577 10 -4.45 -0.25 10.911 10.5 -4.75 -0.25 9.5131 11 -4.75 -0.25 7.5166 11.5 -4.875 -0.25 5.2738 12 -3.5 -0.5 0 NEURITE COORDINATES AND DIAMETERS: 1 3 0.5 -1 -4 2.2 -1.5 -0.5 -4 1.9 -3 0 -5 2.6 6 21 -3 0 -5 2.6 -3.5 -2.5 -5.5 0.7 -5.5 -5 -5.5 0.7 -7.5 -6 -5.5 0.7 -9.5 -7.5 -5 0.7 -12.5 -7 -5 0.7 -15 -5.5 -4.5 0.7 -18.5 -4.5 -4.5 0.7 -21.5 -4.5 -4.5 0.7 -23 -2.5 -4.5 0.5 -25 -3 -4.5 0.5 -27 -2 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12.5 10 -11 1.4 14 10.5 -13 1.2 16.5 11 -14 1 15.5 12 -15.5 1 14 14 -15.5 1 13.5 15 -17 0.8 13.5 16 -18.5 0.8 14.5 14 -20.5 0.7 15.5 10.5 -22 0.7 14.5 8 -22 0.7 16.5 7 -23 0.6 14 8 -23 0.3 9.5 10 -23.5 0.3 6 12.5 -23.5 0.3 2.5 14 -23.5 0.3 -1 12.5 -23.5 0.3 -4 15.5 -23.5 0.3 -4 19 -24.5 0.3 -9.5 21 -25 0.3 -16 19 -24.5 0.3 -19 24 -24 0.3 -25.5 29.5 -24 0.3 -30 31.5 -24 0.3 -33.5 33.5 -23.5 0.3 -37 37.5 -23.5 0.3 -39.5 41 -23.5 0.3 -41 43 -23.5 0.3 -45.5 44 -23.5 0.3 -46.5 46.5 -23.5 0.3 -47 49 -23 0.3 -49.5 52 -23 0.3 -52 54 -23 0.3 -50 57.5 -23 0.3 -52.5 62 -23 0.3 1 3 14 9 -8 2.4 16.5 9.5 -5.5 1.8 17 10 -4.5 1.8 1 3 17 10 -4.5 1.8 18 13 -4.5 0.8 18 16.5 -5 0.8 11 33 18 16.5 -5 0.8 16 18 -5 0.6 11.5 17.5 -5 0.6 10 19 -5 0.4 6.5 18.5 -5.5 0.4 4 17.5 -6 0.4 2 20.5 -4.5 0.4 2.5 23 -4.5 0.4 -1 25 -4.5 0.4 -3 24.5 -4.5 0.4 -4.5 26 -4.5 0.3 -6.5 26.5 -4 0.3 -10 28 -4 0.3 -10 31.5 -4 0.3 -13 32 -4 0.3 -15.5 31.5 -4 0.3 -17.5 33.5 -4 0.3 -19 37 -4 0.3 -24 37 -4 0.3 -27.5 38 -4 0.2 -29.5 40 -2.5 0.2 -30 42.5 -4.5 0.2 -32.5 42.5 -4.5 0.2 -33 44 -3.5 0.2 -35.5 47.5 -4.5 0.2 -35 49 -3 0.2 -36.5 51 -2.5 0.2 -38 53 -4 0.2 -38 56 -4 0.2 -40 58 -4 0.2 -40 62 -4 0.2 -45.5 62.5 -4 0.2 -48.5 62 -4 0.2 2 6 18 16.5 -5 0.8 20 18 -3.5 0.2 22.5 18 -3.5 0.2 26 18 -5 0.2 29 17.5 -5 0.2 33 17.5 -5 0.2 1 5 17 10 -4.5 1.8 17.5 9 -4.5 1.1 19.5 8.5 -5 1.1 22 8.5 -5 1.1 23.5 8.5 -5 1.1 3 7 23.5 8.5 -5 1.1 26 9.5 -5.5 0.3 29.5 12 -6 0.3 32.5 13 -6.5 0.3 34.5 17 -8 0.3 40 18 -8 0.3 42 21 -7.5 0.3 15 45 23.5 8.5 -5 1.1 24 6.5 -5 0.8 25 4.5 -5.5 0.8 27.5 4.5 -5.5 0.8 29 2 -6 0.8 32 2.5 -4.5 0.7 34.5 1 -4 0.7 37.5 2 -5.5 0.7 38.5 0 -5 0.7 41 -0.5 -4 0.7 42 1.5 -6 0.7 44 -0.5 -6 0.7 45.5 -2.5 -4.5 0.7 47 -2 -5 0.7 49.5 -1.5 -4.5 0.7 53.5 0 -4 0.7 58.5 -0.5 -4.5 0.7 61 -1 -3.5 0.7 60.5 1 -3.5 0.7 66.5 -1 -3 0.7 69 1.5 -3.5 0.7 73 4 -3.5 0.5 74 6 -3.5 0.5 80.5 5.5 -2.5 0.5 82 7.5 -4 0.5 84.5 5 -2.5 0.5 85.5 7.5 -2.5 0.5 90.5 6 -1 0.5 92 6.5 -1.5 0.4 95 7 -1.5 0.3 98 8 -1.5 0.3 100.5 10.5 -1.5 0.3 103.5 11.5 -0.5 0.3 107.5 12.5 0 0.3 111.5 13.5 0 0.3 115 15 -0.5 0.3 117.5 17 0.5 0.3 119.5 20 -1.5 0.3 121.5 23.5 -1.5 0.3 124 24 -2 0.3 130 23.5 -2 0.3 130.5 25.5 -2.5 0.3 134 26 -2.5 0.3 136 26.5 -2.5 0.3 139 30.5 -2.5 0.3 CONNECTIONS: 0 1 0 1 2 1 2 1 4 1 4 1 0 1 1 1 2 1 2 1 1 1 0 1 0 1 1 1 1 1 3 1 3 1 0 1 6 1 7 1 7 1 6 1 0 1 0 1 2 1 3 1 3 1 2 1 6 1 6 1 /*----------------------------------------------------------------*/ proc geometry() { /* NULL geometry procedure: keeps the user from calling the geometry procedure in isolation. */ printf("\nYou must re-read the entire geometry\n") printf("file to execute geometry().\n\n") }