/*----------------------------------------------------------------
%W% %G%
cts7259g.asc translated Tue Dec 17 10:28:16 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 12.9168 um length = 19.7625 um area = 801.946 um2
17 three-D points; 19 outline points numbered 1-19
outline diameter = 15.0914 um
6 primary neurites
29 branches totaling 1190.31 um in length, 1219.68 um2 in area
368 tree points translated to 146 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 387
No. trees 7
Text CTS7259G.GR1
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[3],\
dend2[1],\
dend3[13],\
dend4[5],\
dend5[21],\
dend6[9]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
soma connect dend5[0] (0), 0.5
soma connect dend6[0] (0), 0.5
/* neurite geometry*/
for i = 0,2 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,12 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,4 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,20 {
dend5[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,8 {
dend6[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,2 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,12 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,4 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
for i = 1,20 {
dend5[fscan()] connect dend5[i] (0), fscan()
}
for i = 1,8 {
dend6[fscan()] connect dend6[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
17
-6.5 -0.5 1.5 0
-6 -1.4167 1.375 3.1765
-5.5 -2.5833 1.25 6.8516
-4.5 -2.6667 0.75 9.6796
-3.5 -2.2143 0.71429 11.518
-1.5 -1.1429 0.39286 15.748
-1 -1.1 0.5 16.298
1 -1.25 0.5 18.927
2 0.66667 0.25 20.175
2.5 1 0.17857 19.559
3 2.5 -0.39286 16.442
4.5 3.5 -0.60714 14.621
5.5 4.1667 -0.75 13.442
6 3.75 -0.75 11.424
6.5 3.625 -1 8.7214
7 3.375 -0.5 5.1539
7.5 4 0 0
NEURITE COORDINATES AND DIAMETERS:
1 3
-3.5 -8.5 0.5 1.7
-6.5 -10 0.5 1.6
-9.5 -10 1 1.6
1 2
-9.5 -10 1 1.6
-10 -12.5 3.5 0.1
2 10
-9.5 -10 1 1.6
-10.5 -9.5 1.5 1
-11.5 -7 1 0.9
-14 -6 0 0.7
-14.5 -5.5 0 0.3
-17 -5 0 0.3
-18 -7.5 1 0.1
-19.5 -8.5 2 0.1
-22 -8 0.5 0.1
-23 -7 1 0.1
5 16
1 -3 0.5 1
-1.5 -4 5 1
-2.5 -5 8 1
-2.5 -6.5 10 0.7
-1 -8.5 10 0.7
1 -10.5 8.5 0.4
3.5 -10 9 0.4
5 -10.5 9 0.3
6.5 -13 10 0.3
8 -14.5 11 0.3
9.5 -13.5 11.5 0.1
10 -12.5 12 0.1
11.5 -15.5 11.5 0.1
14.5 -17.5 12 0.1
17 -19 10.5 0.1
18.5 -19 11 0.1
3 7
1 -6.5 0 2.5
0 -11 2.5 1.4
0 -14 3.5 0.9
-0.5 -16 5 0.9
-2 -17 7.5 0.9
-3.5 -21 8.5 0.9
-3.5 -22 10 0.9
2 5
-3.5 -22 10 0.9
-2.5 -24 10 0.1
0 -24 9.5 0.1
1 -26.5 9.5 0.1
1.5 -29 9.5 0.1
2 6
-3.5 -22 10 0.9
-5 -23.5 10 0.9
-5.5 -25 10 0.9
-5.5 -26 10 0.6
-6.5 -26.5 10 0.6
-8 -30 12 0.6
9 25
-8 -30 12 0.6
-10.5 -31 11.5 0.1
-12 -33.5 12.5 0.1
-14 -35.5 12 0.1
-18 -39 12.5 0.1
-20 -40 13.5 0.1
-21.5 -44 13.5 0.1
-23.5 -49.5 13.5 0.1
-26.5 -56 15 0.1
-29 -60 16 0.1
-30 -62.5 15.5 0.1
-30.5 -64 15.5 0.1
-31.5 -65 15.5 0.1
-31.5 -69.5 15.5 0.1
-33.5 -72 15.5 0.1
-36.5 -74.5 15.5 0.1
-37.5 -78.5 15.5 0.1
-39 -82 14.5 0.1
-40 -84.5 14.5 0.1
-41.5 -86.5 14.5 0.1
-44 -89.5 15 0.1
-46.5 -92 16.5 0.1
-49 -95.5 16.5 0.1
-52.5 -99.5 17.5 0.1
-53.5 -101 17.5 0.1
1 4
-8 -30 12 0.6
-7.5 -31.5 13 0.1
-9 -36 14 0.1
-9 -36 14 0.1
2 6
-9 -36 14 0.1
-12 -37.5 14 0.1
-14 -41.5 15 0.1
-17 -45.5 15 0.1
-19 -48.5 15 0.1
-19 -48.5 15 0.1
1 3
-19 -48.5 15 0.1
-22 -50.5 15 0.1
-25 -54 15 0.1
1 4
-19 -48.5 15 0.1
-19.5 -52 15 0.1
-21 -55 15 0.1
-21 -55 15 0.1
2 6
-21 -55 15 0.1
-22 -57.5 15 0.1
-24 -60 15 0.1
-26.5 -64.5 15.5 0.1
-27.5 -67.5 15.5 0.1
-28 -68.5 15.5 0.1
2 5
-21 -55 15 0.1
-22 -58.5 15 0.1
-23 -62.5 15 0.1
-23.5 -65 15 0.1
-24 -66.5 15 0.1
2 4
-9 -36 14 0.1
-11.5 -40 15 0.1
-13.5 -44 15 0.1
-14.5 -45 15 0.1
2 6
-14.5 -45 15 0.1
-16 -47 15 0.1
-17.5 -50.5 15 0.1
-20 -54 15.5 0.1
-20.5 -56.5 15.5 0.1
-21.5 -59.5 15.5 0.1
2 5
-14.5 -45 15 0.1
-12 -48.5 14.5 0.1
-11.5 -50.5 14.5 0.1
-10.5 -53.5 14.5 0.1
-10 -56 15 0.1
2 7
-5.5 1.5 0.5 1.4
-6.5 1 3 2
-8 -1.5 6 1.3
-9 0.5 7 1
-11 0.5 7 1
-12.5 -1 7 1
-14 -2 7 1
3 10
-14 -2 7 1
-15 -4.5 7 0.6
-15.5 -6.5 7 0.6
-14 -7 6 0.6
-13 -9 6 0.6
-11.5 -11.5 7 0.6
-10.5 -14 7.5 0.6
-10 -16 7 0.6
-10 -19 9 0.1
-10.5 -19 9 0.1
2 4
-14 -2 7 1
-16 -1.5 10 0.8
-18 0.5 9 0.6
-20.5 -1 11.5 0.6
1 5
-20.5 -1 11.5 0.6
-21 0.5 10.5 0.1
-22 2.5 11.5 0.1
-24 4.5 10 0.1
-24 4.5 10 0.1
3 8
-20.5 -1 11.5 0.6
-20.5 -3.5 11 0.3
-21.5 -6.5 13 0.3
-22 -10.5 13 0.3
-23.5 -14.5 13 0.3
-25 -21 14.5 0.3
-26.5 -24.5 14.5 0.2
-28 -28 14.5 0.1
2 9
3 11.5 0 1.2
2 13.5 -1.5 1.2
2 15.5 -1.5 1.2
4 16 -1.5 1.2
6.5 17.5 0.5 1.2
5 20 1.5 1.2
5.5 24 1.5 1.2
6.5 25.5 1.5 1.2
6.5 25.5 1.5 1.2
5 15
6.5 25.5 1.5 1.2
4.5 26.5 3.5 0.4
3 27.5 6.5 0.4
2 30 8.5 0.4
2 32 8.5 0.2
1.5 34.5 9.5 0.2
1.5 37.5 10.5 0.2
1 40.5 9.5 0.2
1 43 8 0.2
2 46 8 0.2
3.5 49.5 8 0.2
5.5 52 8.5 0.2
6 55.5 8.5 0.2
6 60 7 0.2
5 62.5 7.5 0.1
1 3
6.5 25.5 1.5 1.2
8 27 2 1.1
9 28 2 2.4
2 4
9 28 2 2.4
11.5 30.5 4 0.9
13 33.5 4.5 0.9
14 37 4.5 0.9
1 5
14 37 4.5 0.9
16.5 37.5 4.5 0.9
18.5 36.5 4.5 0.9
19.5 36 4.5 0.9
21 37.5 4.5 0.9
3 8
21 37.5 4.5 0.9
21 39.5 2.5 0.1
23 42.5 3.5 0.1
24 45.5 3.5 0.1
24.5 48 4 0.1
26 52 4 0.1
24.5 56 4 0.1
24.5 59 4 0.1
1 5
21 37.5 4.5 0.9
21.5 35.5 4 0.5
24.5 36 4.5 0.5
25 32.5 5 0.8
25.5 32 5 0.8
3 9
25.5 32 5 0.8
25 29 5 0.1
26 24 5 0.1
27.5 22 8 0.1
29.5 22 9 0.1
31 24.5 9 0.1
32.5 24.5 9 0.1
35 27 9 0.1
36.5 27 9 0.1
6 19
25.5 32 5 0.8
27 33.5 4 0.5
29.5 36 4 0.5
32.5 40.5 4.5 0.5
32.5 42.5 4 0.5
35 46 3 0.5
36 48.5 2.5 0.5
37.5 52 2.5 0.5
38.5 55.5 2.5 0.5
39.5 59 2.5 0.5
40.5 63 2.5 0.5
42 66 2.5 0.5
42.5 67 2.5 0.5
42.5 68.5 2.5 0.3
43.5 71.5 2.5 0.3
43 72.5 2.5 0.3
44 74 3 0.3
44.5 76 3.5 0.3
46 81 3 0.3
4 8
46 81 3 0.3
46.5 82.5 3 0.1
48 86 2.5 0.1
49.5 89.5 5 0.1
51 93 3.5 0.1
54.5 97 4 0.1
56.5 101.5 4.5 0.1
58.5 108 5 0.1
6 13
46 81 3 0.3
44.5 86 4 0.2
44.5 89.5 4 0.2
42 91 4 0.2
43.5 95.5 2.5 0.2
43.5 101 4.5 0.2
44 105 2 0.2
44.5 109.5 4 0.1
45.5 115 3 0.1
47.5 119.5 2 0.1
48.5 126 2.5 0.1
48.5 131 2 0.1
47 134.5 2 0.1
7 22
14 37 4.5 0.9
13.5 39.5 4 0.3
14.5 43 5 0.3
16 44.5 5.5 0.2
17 48 4 0.1
17.5 50 4 0.1
20 54 4.5 0.1
24 58 3.5 0.1
27 60.5 5.5 0.1
30.5 62.5 5.5 0.1
31.5 63.5 5.5 0.1
34.5 66.5 5.5 0.1
35.5 67.5 5.5 0.1
37 68 5.5 0.1
40 72 4 0.1
41.5 75.5 4 0.1
43 77.5 4 0.1
45.5 79 4 0.1
49 78.5 4 0.1
50.5 79 4 0.1
52 75 3.5 0.1
54.5 73.5 5 0.1
3 10
9 28 2 2.4
8.5 30.5 1.5 0.5
8.5 33 2.5 0.5
8.5 35.5 3 0.5
9.5 37 3 0.5
8 38.5 3 0.5
8 40 3 0.5
7 41.5 3 0.5
7 45 3 0.5
6.5 46.5 4 0.1
3 12
6.5 46.5 4 0.1
3 47.5 4 0.1
1 48 4 0.1
-1 48.5 5.5 0.1
-3 47.5 5.5 0.1
-4 49.5 6 0.1
-6 49.5 5.5 0.1
-6 47.5 5.5 0.1
-8 50 5.5 0.1
-9.5 47 5.5 0.1
-11.5 49 6 0.1
-15 48.5 6.5 0.1
2 6
6.5 46.5 4 0.1
8 49.5 3.5 0.3
9 51.5 3.5 0.3
9 55.5 5.5 0.3
6.5 56.5 4.5 0.3
4 58 6 0.3
1 6
4 58 6 0.3
3.5 56.5 6 0.1
1.5 55.5 6 0.1
0 55.5 6 0.1
-0.5 54 6 0.1
-2.5 55 6 0.1
3 8
4 58 6 0.3
3.5 60.5 5 0.3
4 64.5 6 0.3
5.5 68.5 4 0.3
6 72 4 0.3
6.5 75 3.5 0.3
6.5 78 3.5 0.3
6.5 78 3.5 0.1
2 4
6.5 78 3.5 0.1
6 80.5 4 0.1
5 84 4 0.1
6 89 4 0.1
1 3
6.5 78 3.5 0.1
8 82 4.5 0.2
9 85 4 0.2
3 6
9 85 4 0.2
10.5 85 4 0.2
11.5 88.5 4.5 0.2
14.5 95.5 4 0.2
15 100 4 0.2
17 104.5 4 0.2
3 5
9 85 4 0.2
9 88.5 4 0.2
9 97 4 0.2
9.5 105 4.5 0.2
8.5 108.5 3.5 0.2
1 3
6 7 0.5 2
6.5 9 4 2
6.5 10.5 4.5 2
3 8
6.5 10.5 4.5 2
8.5 10.5 4.5 0.8
9 8 6.5 0.8
10 4 6.5 0.8
10.5 -2 8 0.8
10.5 -4 8 0.8
12 -6 8 0.8
14.5 -6.5 8 0.8
3 5
14.5 -6.5 8 0.8
16.5 -12.5 10 0.1
15.5 -19.5 10 0.1
14 -26 12.5 0.1
11.5 -29 11.5 0.1
3 8
14.5 -6.5 8 0.8
16.5 -3 9 0.2
18.5 1 8.5 0.2
20 3.5 8.5 0.2
22.5 9 8 0.2
25 8 5.5 0.2
25.5 5 6 0.2
27.5 5.5 6 0.2
2 7
27.5 5.5 6 0.2
28 3 6 0.2
30.5 3 5.5 0.2
32.5 3.5 5.5 0.2
33 3 5.5 0.2
35 3.5 6 0.2
38.5 4.5 7.5 0.2
11 28
27.5 5.5 6 0.2
27.5 6.5 4.5 0.2
29.5 8 4.5 0.2
31 8 5.5 0.2
33.5 14 4 0.2
35 16.5 4 0.2
37.5 22 4.5 0.2
39.5 25.5 2.5 0.2
42 28 5.5 0.2
44 31.5 5.5 0.2
47.5 32 4 0.2
48 31.5 4 0.2
49 27 2 0.2
47.5 22 2 0.2
51.5 20.5 2 0.2
51.5 18 3.5 0.2
51.5 15.5 3.5 0.2
51.5 14 3.5 0.2
53 9.5 3.5 0.2
53 5 5 0.2
56 3 4.5 0.2
57 1 4.5 0.2
59 1 5.5 0.2
59 -3.5 6.5 0.2
58.5 -8 6 0.1
59 -15.5 6 0.1
59 -23 6 0.1
59.5 -27 5.5 0.1
2 6
6.5 10.5 4.5 2
6.5 12.5 4 0.6
9 15 4 0.6
10.5 18 4 0.6
10.5 24 3.5 0.6
13 26.5 4.5 0.6
2 7
13 26.5 4.5 0.6
13.5 28.5 4.5 0.1
13.5 29.5 4.5 0.1
12 30 3.5 0.1
11 27.5 3.5 0.1
8.5 22 3.5 0.1
8 18.5 3.5 0.1
5 11
13 26.5 4.5 0.6
14.5 27.5 4.5 0.1
17.5 26 3.5 0.1
19 27.5 6.5 0.1
23 29.5 6.5 0.1
25 32 5.5 0.1
28 37.5 5 0.1
32 43 4 0.1
32.5 48 5 0.1
32.5 52.5 2.5 0.1
32.5 58.5 1.5 0.1
CONNECTIONS:
0 1
0 1
0 1
0 1
2 1
2 1
4 1
5 1
5 1
7 1
7 1
4 1
10 1
10 1
0 1
0 1
2 1
2 1
0 1
0 1
2 1
3 1
4 1
4 1
6 1
6 1
8 1
8 1
3 1
2 1
12 1
12 1
14 1
14 1
16 1
16 1
18 1
18 1
0 1
1 1
1 1
3 1
3 1
0 1
6 1
6 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}