/*----------------------------------------------------------------
%W% %G%
ctt3219h.asc translated Tue Dec 17 10:28:17 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 12.7034 um length = 22.7408 um area = 907.561 um2
13 three-D points; 14 outline points numbered 1-14
outline diameter = 16.9069 um
7 primary neurites
36 branches totaling 1641.72 um in length, 2899.35 um2 in area
361 tree points translated to 161 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 375
No. trees 8
Text CTT3219H.GR1, HRP and silver enhancement
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[1],\
dend2[19],\
dend3[1],\
dend4[29],\
dend5[1],\
dend6[3],\
dend7[1]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
soma connect dend5[0] (0), 0.5
soma connect dend6[0] (0), 0.5
soma connect dend7[0] (0), 0.5
/* neurite geometry*/
for i = 0,0 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,18 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,28 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend5[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,2 {
dend6[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend7[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,0 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,18 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,0 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,28 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
for i = 1,0 {
dend5[fscan()] connect dend5[i] (0), fscan()
}
for i = 1,2 {
dend6[fscan()] connect dend6[i] (0), fscan()
}
for i = 1,0 {
dend7[fscan()] connect dend7[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
13
-7.5 3.5 1.5 0
-7 0.5625 1.75 8.1404
-5.5 1.6875 1.75 12.635
-5 1.5208 1.7708 13.05
-2 -0.60417 2.6458 17.873
0.5 -1.5714 3.1071 20.264
1.5 -2.2778 3.1944 20.611
4 -2.7222 3.0556 18.779
5 -1.6667 2.1667 15.391
5.5 -1.5 1.75 13.01
6.5 -1.1667 1.0833 8.3749
7 -2 0 4
7 -4 0 0
NEURITE COORDINATES AND DIAMETERS:
1 4
8 3 -0.5 1.5
9.5 2 -0.5 1.2
11.5 2 -0.5 1.2
13 2.5 1 1.4
1 3
0.5 8.5 1 3.3
2 10 5 3.3
2.5 12 6 3.3
1 3
2.5 12 6 3.3
6.5 13.5 7.5 0.4
9 16.5 8.5 0.9
4 7
9 16.5 8.5 0.9
14.5 15.5 10.5 0.2
19 17 11 0.2
21 20.5 11 0.2
24.5 26 12.5 0.2
26.5 31 12.5 0.2
30 37.5 13 0.2
4 9
9 16.5 8.5 0.9
9 19.5 8.5 0.2
10 23.5 8.5 0.2
9 30 9.5 0.2
9 35.5 11 0.2
11 41 11 0.2
11 45 14 0.2
13.5 49.5 13.5 0.2
13.5 51 13.5 0.2
2 4
13.5 51 13.5 0.2
17.5 52 13.5 0.2
19.5 52 13.5 0.1
25.5 54 13.5 0.1
3 7
13.5 51 13.5 0.2
13 54.5 14 0.1
12 61 13.5 0.1
11 66.5 13 0.1
10 71.5 13 0.1
8 78.5 13 0.1
8 78.5 13 0.1
2 5
2.5 12 6 3.3
1.5 14.5 7.5 1.2
-0.5 17.5 8.5 1.2
-0.5 22.5 8.5 1.2
-3 25 8.5 2.1
5 14
-3 25 8.5 2.1
-5.5 22.5 8.5 0.5
-7.5 19.5 9.5 0.4
-9 18 9.5 0.4
-11 15.5 9.5 0.4
-12 13.5 11 0.4
-13.5 12 11 0.4
-16.5 11 11 0.4
-23 12 8.5 0.4
-25 11.5 8.5 0.4
-28 11 8.5 0.4
-31 9.5 8.5 0.3
-35 8.5 9 0.3
-37 7 7.5 0.3
1 3
-3 25 8.5 2.1
-3.5 26 9 1.3
-3.5 28.5 9 1.3
3 5
-3.5 28.5 9 1.3
-10 27.5 11 0.1
-16 25 10.5 0.1
-21.5 23.5 8.5 0.1
-23.5 24 8.5 0.1
3 7
-3.5 28.5 9 1.3
-2.5 30.5 10 1
-3 34 11 1
-3 37.5 11 1
-2.5 40 11.5 1
-3.5 44.5 13 1
-3.5 48.5 14.5 1
3 7
-3.5 48.5 14.5 1
-1.5 52 14.5 0.6
-1 56 13.5 0.4
0 62 13.5 0.4
2 65.5 13.5 0.4
2 69.5 13.5 0.4
5 73 13 0.4
3 5
5 73 13 0.4
7.5 75.5 12 0.1
12 79 17 0.1
17.5 81 17 0.1
19.5 83.5 17 0.1
3 6
5 73 13 0.4
3.5 78 15 0.1
3.5 84 15 0.1
4.5 91.5 16.5 0.1
6.5 96.5 16.5 0.1
7 101.5 16.5 0.1
1 3
-3.5 48.5 14.5 1
-5.5 51 14 0.8
-7.5 55 14 0.8
8 14
-7.5 55 14 0.8
-5.5 58 12.5 0.2
-4 63 12.5 0.2
-4.5 66.5 13 0.2
-6 72 11.5 0.2
-8 77.5 12.5 0.2
-7 81.5 12.5 0.2
-7 86.5 12.5 0.2
-5.5 92 13 0.2
-1.5 95 15.5 0.2
3.5 100 16 0.2
9.5 105 15 0.2
13.5 108 18 0.2
16 113 18.5 0.2
2 4
-7.5 55 14 0.8
-10 57 14.5 0.7
-11.5 61 13.5 0.7
-13.5 64 13.5 0.7
3 7
-13.5 64 13.5 0.7
-13 67 14.5 0.2
-13 70 14.5 0.2
-13 76 15 0.2
-11.5 80.5 15 0.2
-10 88 15 0.2
-11.5 92 15 0.2
3 7
-13.5 64 13.5 0.7
-15.5 63.5 14 0.4
-17.5 57.5 13 0.4
-18 53.5 14 0.4
-21 48.5 12 0.2
-22 43 13 0.2
-22.5 41.5 13.5 0.1
6 11
-7 -4.5 0.5 0.6
-11 -2.5 -4.5 0.3
-14.5 -4.5 -4.5 0.3
-16.5 -7.5 -4.5 0.3
-20 -9 -3 0.3
-24.5 -7 -2.5 0.3
-28 -2.5 -1.5 0.3
-35 -2.5 -2.5 0.3
-40 0.5 -2.5 0.1
-45 -1.5 -2 0.1
-51.5 -4 -1.5 0.1
2 4
0.5 -12.5 0 3.6
2 -18.5 7.5 3
3.5 -24 8 4.5
3.5 -24.5 7.5 4.5
2 4
3.5 -24.5 7.5 4.5
6 -29.5 9.5 3.6
8 -35.5 10 3
10 -38 13.5 3
2 3
10 -38 13.5 3
9.5 -43.5 14 2.3
9.5 -48.5 16 2.3
3 7
9.5 -48.5 16 2.3
6.5 -50.5 13 0.3
5.5 -53.5 13 0.3
5.5 -58 10.5 0.3
5.5 -62 12 0.3
5.5 -67 14 0.1
4.5 -69.5 14 0.1
1 4
9.5 -48.5 16 2.3
11.5 -51 14.5 1.8
14.5 -56 15 1.8
14.5 -56 15 1.8
2 5
14.5 -56 15 1.8
17 -56.5 14.5 0.4
21.5 -55 13.5 0.4
24 -55.5 13.5 0.4
27.5 -56.5 13 0.4
3 7
27.5 -56.5 13 0.4
30.5 -56 14 0.3
35 -56 14 0.3
39 -55.5 14 0.3
43 -55 14 0.3
48 -53 14 0.3
51.5 -51.5 13 0.3
4 8
27.5 -56.5 13 0.4
27.5 -60 12.5 0.3
29.5 -65 12.5 0.3
28.5 -69.5 12.5 0.3
27 -71.5 12.5 0.3
19 -71.5 13 0.3
17 -75 14 0.3
15.5 -78.5 13 0.1
1 2
14.5 -56 15 1.8
15 -61.5 15 1.8
1 2
15 -61.5 15 1.8
12.5 -64.5 15 0.4
1 3
12.5 -64.5 15 0.4
14 -67.5 15.5 0.1
14 -69 15.5 0.1
3 7
12.5 -64.5 15 0.4
10.5 -65.5 15 0.3
7.5 -69 17.5 0.3
5.5 -73.5 17.5 0.3
2 -78 18 0.3
-0.5 -82.5 18 0.3
-1.5 -85 18 0.3
1 2
15 -61.5 15 1.8
17 -64 14.5 1.3
3 5
17 -64 14.5 1.3
15.5 -69.5 15 0.2
15.5 -74 15 0.2
15 -79.5 15.5 0.2
13.5 -83.5 18 0.2
2 5
17 -64 14.5 1.3
21 -67.5 15.5 1
23 -70.5 14 1
27.5 -73 15 1
29.5 -75.5 16.5 1
3 6
29.5 -75.5 16.5 1
27.5 -78.5 15 0.8
26.5 -83 15 0.8
27 -85.5 15 0.8
31 -89 15 0.8
36.5 -93 15.5 0.8
4 8
36.5 -93 15.5 0.8
40 -92 15 0.3
45 -91.5 15 0.3
48.5 -94 15 0.3
52.5 -94.5 16 0.3
58 -94.5 16 0.3
64 -92.5 16 0.3
70.5 -91.5 16 0.1
2 4
36.5 -93 15.5 0.8
40 -98 20 0.3
45.5 -103.5 20 0.3
48.5 -106 20 0.3
1 3
48.5 -106 20 0.3
53 -108.5 20 0.1
55.5 -109.5 20.5 0.1
2 4
55.5 -109.5 20.5 0.1
58 -114 25 0.1
62 -119.5 25 0.1
63 -122 25 0.1
3 5
55.5 -109.5 20.5 0.1
60 -111 20.5 0.1
66 -111.5 20.5 0.1
73 -113 20 0.1
76 -113 20 0.1
2 4
48.5 -106 20 0.3
50.5 -111 19 0.1
51.5 -114.5 18.5 0.1
53.5 -116 18 0.1
3 6
29.5 -75.5 16.5 1
34 -78 18.5 0.3
41 -79.5 20 0.3
45 -78 17.5 0.3
50.5 -76.5 18 0.3
53.5 -76.5 18 0.1
1 2
10 -38 13.5 3
13.5 -38.5 13.5 1
3 7
13.5 -38.5 13.5 1
18 -39.5 13 0.8
21.5 -40 10 0.7
25 -42.5 9.5 0.7
30 -43.5 9.5 0.7
34.5 -45 6.5 0.7
34.5 -45 6.5 0.1
3 7
13.5 -38.5 13.5 1
17 -37 13.5 0.6
22.5 -39 13.5 0.6
27 -39.5 14.5 0.6
31.5 -40 14.5 0.6
37 -38 13.5 0.6
38 -36 13.5 0.6
6 14
38 -36 13.5 0.6
38 -32 11.5 0.2
40 -27 11.5 0.2
44 -23.5 11 0.2
45.5 -19.5 11.5 0.2
48 -16.5 11.5 0.2
49 -13 11.5 0.2
51 -10.5 12 0.2
52 -5.5 12 0.2
55.5 -2 13 0.2
57 0 13 0.2
60.5 0 13.5 0.2
64.5 3 13 0.2
66.5 7 17.5 0.2
2 4
38 -36 13.5 0.6
40 -36 15 0.2
44.5 -36 14 0.2
49.5 -34 12 0.2
5 10
3.5 -24.5 7.5 4.5
0 -29.5 7.5 0.4
-1 -32.5 7.5 0.4
-1 -37 9 0.4
-0.5 -40.5 10 0.4
-1.5 -45 11.5 0.4
-3.5 -49 12.5 0.4
-4.5 -52.5 10 0.4
-5.5 -57.5 9.5 0.1
-7 -60.5 10 0.1
7 20
4.5 -10.5 1 0.3
6.5 -10 4 0.3
7 -9.5 5 0.3
9.5 -9.5 4 0.3
11.5 -11.5 1 0.3
13.5 -11.5 1 0.3
17.5 -12.5 1 0.3
18.5 -12.5 1.5 0.3
20.5 -12.5 -0.5 0.3
23.5 -13.5 0 0.3
26.5 -14 -1.5 0.3
28.5 -16.5 0 0.3
31 -15.5 -3 0.3
35 -16 -4 0.3
40.5 -18 -3.5 0.3
43 -19.5 -3.5 0.3
44.5 -18.5 -2.5 0.3
52 -23.5 -1.5 0.3
57 -25 -1.5 0.3
59 -26 -1.5 0.1
3 8
1.5 -8.5 0.5 0.9
3.5 -10.5 7 0.9
4.5 -11 9.5 0.9
7.5 -13 10.5 0.9
10.5 -14.5 10 1.8
12.5 -16 10.5 1.8
14.5 -18.5 12.5 1.2
17.5 -21.5 14.5 1.8
12 28
17.5 -21.5 14.5 1.8
20 -21.5 14.5 0.8
23 -19.5 14.5 0.8
25.5 -18 15 0.8
28.5 -17 15.5 0.8
34 -15 16 0.8
40 -18 15.5 0.8
44.5 -28 13.5 0.5
47.5 -32.5 13.5 0.5
52 -36.5 13.5 0.5
54.5 -40 13 0.5
57.5 -40 13 0.5
60.5 -38 13 0.5
63 -35 13 0.5
65 -31.5 17 0.3
67 -30 17 0.3
69.5 -25.5 15 0.3
73.5 -27 14.5 0.3
78 -24.5 14.5 0.3
80 -23.5 14.5 0.3
83 -23.5 14.5 0.3
85.5 -24.5 15.5 0.3
88.5 -25.5 15.5 0.3
92.5 -24.5 16 0.3
96 -26 16 0.3
98.5 -24.5 16.5 0.3
103 -25.5 15.5 0.3
106 -24 13 0.1
3 6
17.5 -21.5 14.5 1.8
18 -26 14 0.7
21.5 -31.5 16 0.7
20.5 -35.5 19.5 0.5
12.5 -38.5 18 0.5
12.5 -38.5 18 0.5
2 2
1 -12.5 0 1.9
2 -17 16 2.1
CONNECTIONS:
0 1
1 1
1 1
3 1
3 1
0 1
6 1
6 1
8 1
8 1
10 1
11 1
11 1
10 1
14 1
14 1
16 1
16 1
0 1
1 1
2 1
2 1
4 1
5 1
5 1
4 1
8 1
9 1
9 1
8 1
12 1
12 1
14 1
15 1
15 1
17 1
18 1
18 1
17 1
14 1
1 1
23 1
23 1
25 1
25 1
0 1
0 1
0 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}