/*----------------------------------------------------------------
%W% %G%
ctty238d.asc translated Tue Dec 17 10:28:22 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 12.0113 um length = 26.1734 um area = 987.649 um2
10 three-D points; 13 outline points numbered 1-13
outline diameter = 19.4011 um
3 primary neurites
34 branches totaling 1341.7 um in length, 2146.68 um2 in area
322 tree points translated to 76 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 335
No. trees 4
Text T11238DO, HRP and DAB, 2/9/89
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[1],\
dend2[26],\
dend3[1]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
/* neurite geometry*/
for i = 0,0 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,25 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,0 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,25 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,0 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
10
-15 -1 3 0
-11.5 -1.35 1.525 6.5949
-10 -1.125 0.875 8.6963
-8.5 -0.88636 0.61364 10.596
-4.5 -0.25 0.25 15.89
-0.5 0.5 -0.5 21.024
3.5 0.25 -0.7 17.556
4.5 0.54545 -0.88636 15.956
7 0.15909 -1.2273 9.6972
9 -2.5 -1.5 0
NEURITE COORDINATES AND DIAMETERS:
1 2
-13.5 -1.5 2 6
-16 -0.5 2 5.4
2 3
8.5 4 -1 4.7
13 5 1.5 3.1
16.5 10 6.5 4
1 3
16.5 10 6.5 4
20.5 15 7.5 3.4
22.5 16 7.5 3.4
1 3
22.5 16 7.5 3.4
27 17.5 7.5 2
30 19 7 2.5
1 3
30 19 7 2.5
34.5 20.5 7.5 1.7
37 21.5 7.5 1.7
3 5
37 21.5 7.5 1.7
45 22.5 7.5 1.7
49 22.5 7.5 1.7
55.5 25 7 1.7
60 26 7 1.7
6 12
60 26 7 1.7
63 26 9 0.4
70 26.5 9.5 0.4
73 26.5 10.5 0.4
78 27.5 11 0.4
83.5 29.5 11.5 0.4
87.5 32 11.5 0.1
91 34 10.5 0.1
97 36 10.5 0.1
102.5 37.5 10.5 0.1
109.5 38 10.5 0.1
113.5 37 10.5 0.1
2 3
60 26 7 1.7
66.5 27 6.5 0.6
73 27.5 6 0.6
7 14
73 27.5 6 0.6
76.5 26 8 0.5
79.5 23.5 8 0.5
82.5 22.5 8 0.5
88 24.5 8.5 0.2
93.5 27 8 0.2
98.5 29.5 7.5 0.2
103.5 32.5 7.5 0.2
108.5 34.5 7.5 0.2
114.5 34.5 7.5 0.2
118 34.5 7.5 0.2
124 33.5 7.5 0.2
131 34.5 7.5 0.2
131 34.5 7.5 0.2
8 16
73 27.5 6 0.6
77.5 28.5 7 0.3
80.5 28.5 6 0.3
83.5 27 6 0.3
85 27 6 0.3
88 24.5 6 0.3
96.5 23.5 6.5 0.3
101.5 23.5 6.5 0.3
107 22.5 6.5 0.3
113 23 7.5 0.3
115.5 23 7 0.3
121 23 6.5 0.3
129 24 6.5 0.1
135.5 25.5 6.5 0.1
141 28.5 6.5 0.1
145.5 30 6.5 0.1
3 6
37 21.5 7.5 1.7
38 24.5 8 0.6
41 28 7.5 0.6
45.5 32 7.5 0.6
51.5 36 7 0.6
55.5 38.5 6 0.6
3 8
55.5 38.5 6 0.6
60.5 40 6 0.4
64 41.5 6.5 0.4
68 43 7 0.4
70.5 43.5 5.5 0.4
76.5 47.5 6 0.4
80 50 6 0.1
80 50 6 0.1
2 5
80 50 6 0.1
82 53.5 6.5 0.1
82 57.5 8 0.1
82 60 7.5 0.1
82 63 7.5 0.1
2 4
80 50 6 0.1
81.5 51 7.5 0.1
85 52.5 7.5 0.1
90 54.5 7.5 0.1
3 8
55.5 38.5 6 0.6
56 40.5 5.5 0.5
55.5 43.5 6.5 0.5
55 44.5 8 0.5
56.5 46.5 7.5 0.5
60 48 7.5 0.5
62.5 50 7.5 0.3
65.5 52.5 7.5 0.1
3 9
30 19 7 2.5
30.5 21.5 7 0.8
29.5 23.5 6.5 0.8
31 25.5 7 0.8
29.5 27.5 6.5 0.8
30.5 30 7.5 0.8
30.5 34.5 7.5 0.8
34.5 36.5 7.5 0.8
34.5 36.5 7.5 0.5
2 4
34.5 36.5 7.5 0.5
36 35 7.5 0.1
40 35 8 0.1
43.5 37 8.5 0.1
2 4
34.5 36.5 7.5 0.5
37 38.5 9 0.1
40 41 9 0.1
40 44.5 9 0.1
1 4
22.5 16 7.5 3.4
22 18.5 6 0.9
20 19.5 6.5 0.9
20.5 21 6.5 0.9
1 2
20.5 21 6.5 0.9
19.5 22 6.5 0.9
1 4
19.5 22 6.5 0.9
20 24 6.5 0.1
18 27 7.5 0.1
18 27 7.5 0.1
2 6
19.5 22 6.5 0.9
18 20.5 7 0.1
15.5 20.5 7 0.1
13 22.5 7.5 0.1
11 20 7.5 0.1
11 20 7.5 0.1
5 10
20.5 21 6.5 0.9
23.5 21.5 6 0.1
25.5 23.5 5 0.1
29.5 23 4.5 0.1
33.5 26 4.5 0.1
38.5 26.5 3.5 0.1
44 27 5 0.1
51 27.5 6 0.1
58.5 29.5 6.5 0.1
63.5 30.5 6 0.1
1 3
63.5 30.5 6 0.1
68.5 31 6.5 0.1
68.5 31 6.5 0.1
5 8
63.5 30.5 6 0.1
66 34 6.5 0.1
72.5 36.5 6 0.1
79 37.5 6 0.1
83.5 38.5 6.5 0.1
90.5 39.5 8 0.1
97.5 41.5 8 0.1
104 43.5 8 0.1
1 3
16.5 10 6.5 4
20 8.5 7.5 1.5
21 8.5 8.5 1.5
1 3
21 8.5 8.5 1.5
20.5 5 8 1.5
23 4 8 1.5
5 11
4 1.5 -0.5 0.1
5 -1.5 3.5 0.1
7 -5.5 4.5 0.1
10.5 -6.5 4.5 0.1
10.5 -8.5 6 0.1
13.5 -8 6 0.1
13.5 -13.5 6.5 0.1
10 -17.5 6.5 0.1
3.5 -21 6 0.1
-1.5 -22.5 5.5 0.1
-1.5 -22.5 5.5 0.1
CONNECTIONS:
0 1
1 1
2 1
3 1
4 1
4 1
6 1
6 1
3 1
9 1
10 1
10 1
9 1
2 1
14 1
14 1
1 1
17 1
18 1
18 1
17 1
21 1
21 1
0 1
24 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}