/*----------------------------------------------------------------
%W% %G%
ctt1209c.asc translated Mon Dec 16 17:00:23 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 9.21566 um length = 17.8931 um area = 518.037 um2
14 three-D points; 19 outline points numbered 1-19
outline diameter = 12.5841 um
3 primary neurites
15 branches totaling 1077.45 um in length, 1325.06 um2 in area
305 tree points translated to 123 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 324
No. trees 4
Text T01209CO,retrograde HRP, Silver enhanced, 1/31/89
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[13],\
dend2[7],\
dend3[7]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
/* neurite geometry*/
for i = 0,12 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,6 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,6 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,12 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,6 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,6 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
14
-6 -4 -1.5 0
-6 -3 -1.5 2
-5.5 -3.25 -1.5 4.5
-5 -3 -1.5 6
-5 -2 -1.5 8
-4.5 -1.625 -1.5 9.75
-4 -1.05 -1.45 11.1
-2 0 -2 14.142
0 1.25 -2 14.637
2.5 2 -2.75 12.01
4.5 2.25 -1.25 9.1924
5 2.25 -1.75 5.1478
5 1.25 -1.75 3.5355
5 0 -0.5 0
NEURITE COORDINATES AND DIAMETERS:
2 2
5 5.5 4.5 3.1
4.5 5.5 -10 2.8
1 3
4.5 5.5 -10 2.8
6.5 9.5 -10.5 1.9
8 14 -11 1.9
2 5
8 14 -11 1.9
10 16.5 -10.5 1.5
11.5 17.5 -10.5 1.5
13 22 -9.5 1.2
15.5 25.5 -9.5 1.7
7 26
15.5 25.5 -9.5 1.7
17 24.5 -9 0.6
18.5 24.5 -9 0.5
20 25 -7.5 0.4
22.5 24 -8.5 0.4
24 24 -8.5 0.4
25 26 -8.5 0.4
26.5 28 -7.5 0.4
28 30 -8.5 0.4
30.5 31 -10 0.3
33.5 32 -9.5 0.3
36 31.5 -9.5 0.3
38 33 -10 0.3
38.5 32 -9.5 0.1
41 34 -10 0.1
44.5 35 -9 0.1
46 36 -9 0.1
47.5 35.5 -9 0.1
50 37 -9.5 0.1
54.5 38 -8 0.1
59 39 -7.5 0.1
60.5 39 -7.5 0.1
62.5 40.5 -7.5 0.1
65.5 40 -7 0.1
69.5 42 -8 0.1
69.5 42 -8 0.1
1 4
15.5 25.5 -9.5 1.7
15.5 27 -9.5 1
16.5 30.5 -8.5 1
17.5 33.5 -8 1
26 69
17.5 33.5 -8 1
20 36 -8.5 0.7
23 38.5 -8 0.7
26.5 40 -8 0.4
29.5 43 -5.5 0.4
32 45.5 -3 0.4
33.5 48 -3.5 0.2
37 50 -3.5 0.2
41 52.5 -4 0.2
42 55 -5 0.2
46 56.5 -5 0.2
48 58 -5 0.2
50 60 -7.5 0.2
52 62 -7 0.2
56 62 -7 0.2
58 65 -7 0.2
59.5 65 -7 0.2
61.5 62.5 -7 0.2
63 64 -7 0.2
66 65 -7.5 0.2
67.5 64.5 -7.5 0.2
70 63 -4 0.2
73 65 -4 0.2
75 68.5 -4 0.2
76.5 72 -2.5 0.2
78.5 72.5 -2.5 0.1
82.5 74 -1.5 0.1
86.5 78.5 -1.5 0.1
89.5 77.5 -2.5 0.1
90.5 80 -1 0.1
93.5 79.5 -1 0.1
95 81 -1 0.1
96 82.5 -1 0.1
100 84.5 -1 0.1
103 90 -1 0.1
106 90 1 0.1
111.5 94 2 0.1
113 91 1.5 0.1
117 93.5 1.5 0.1
118.5 92.5 1.5 0.1
122 94.5 3.5 0.1
126 96 3 0.1
127 99 3 0.1
129.5 102.5 3 0.1
132.5 105 4 0.1
136.5 108 5.5 0.1
139 111 5.5 0.1
142 111.5 5.5 0.1
144.5 114 6 0.1
148 117 6.5 0.1
154 116.5 11 0.1
154 119.5 11 0.1
157 123 12.5 0.1
158.5 128 12.5 0.1
159.5 132 13 0.1
161.5 133.5 12.5 0.1
164 136.5 14 0.1
167.5 138.5 14 0.1
169 138.5 14.5 0.1
170.5 140.5 15 0.1
174 141 18 0.1
174.5 144.5 18 0.1
179 146.5 18 0.1
179.5 150 19.5 0.1
182 150.5 22.5 0.1
182 153.5 22.5 0.1
185.5 154.5 22.5 0.1
185.5 157 22.5 0.1
188.5 157 23.5 0.1
3 11
17.5 33.5 -8 1
17 36 -9.5 0.9
17.5 38.5 -11 0.5
17 41.5 -11.5 0.5
17 43.5 -11.5 0.5
17.5 46 -11.5 0.5
17 49 -10.5 0.5
16.5 52.5 -10 0.5
16.5 56 -8.5 0.5
15.5 57 -8 0.5
17 58.5 -8 0.5
5 10
17 58.5 -8 0.5
19.5 61 -7 0.2
23 63 -8.5 0.2
26 66 -9 0.2
29.5 67.5 -6 0.2
34 71 -4 0.2
40 74 -2.5 0.2
43 78.5 5.5 0.2
45 83 5.5 0.2
46 83.5 3.5 0.2
5 13
17 58.5 -8 0.5
16 61 -6.5 0.2
16.5 63 -6.5 0.2
18.5 67 -6.5 0.2
22 70.5 -6.5 0.2
25 75 -6.5 0.2
30 77 -5.5 0.2
33.5 82 -5.5 0.2
35 83 -5 0.2
38 84 -5 0.2
40 89 -4.5 0.2
42.5 89 -5 0.2
42.5 89 -5 0.1
8 22
8 14 -11 1.9
7 16.5 -12 0.6
7 18.5 -8.5 0.6
6 20.5 -11.5 0.4
6.5 23 -12 0.4
5.5 25 -12 0.4
7.5 28.5 -11.5 0.3
8 32 -11.5 0.3
9 36 -10 0.3
9 38.5 -9 0.3
9.5 41 -8.5 0.3
10.5 44 -7.5 0.3
10 47.5 -8 0.3
9 51.5 -8 0.2
9 55.5 -10 0.2
9.5 59 -10 0.2
10.5 61 -10 0.2
10.5 63 -10 0.2
12 66.5 -16.5 0.2
13 69.5 -16.5 0.2
15 73 -15 0.2
15 73 -15 0.2
1 3
4.5 5.5 -10 2.8
7 3.5 -11 1.5
10.5 5 -11 1.5
9 28
10.5 5 -11 1.5
13 3.5 -11 0.7
15.5 3 -11 0.7
16 2 -11 0.7
16 0 -11 0.7
18.5 0 -11 0.7
20 -2 -11.5 0.7
21.5 -2 -12 0.7
22 -5 -12.5 0.5
24.5 -4 -13 0.5
25.5 -7 -13 0.5
29.5 -8.5 -12.5 0.5
29.5 -10.5 -12.5 0.5
31.5 -11 -12.5 0.5
34 -9 -12 0.5
37 -13 -11 0.5
40.5 -12 -10 0.2
41 -14.5 -10 0.2
44 -14 -9 0.2
48 -16 -10.5 0.2
50.5 -15.5 -11 0.2
52 -14.5 -10.5 0.2
55 -17.5 -10.5 0.2
57.5 -15.5 -10.5 0.2
63 -17.5 -6.5 0.2
67 -15.5 -1.5 0.2
68 -12 -2 0.2
66.5 -12.5 -3 0.2
11 28
10.5 5 -11 1.5
11.5 6.5 -13.5 0.2
14.5 8.5 -13 0.2
16 10 -13 0.2
18 11.5 -12.5 0.2
22 12.5 -12.5 0.2
27.5 17 -12.5 0.2
30.5 20 -11 0.1
34.5 23 -11 0.1
37.5 23.5 -12 0.1
39.5 25 -12.5 0.1
43.5 25 -11 0.1
45 26 -11 0.1
47 23 -11 0.1
50.5 25 -11 0.1
54.5 24.5 -11 0.1
57.5 27 -10.5 0.1
58.5 25.5 -10.5 0.1
62 28 -10.5 0.1
65.5 27.5 -10.5 0.1
69.5 28.5 -8 0.1
72 30.5 -8 0.1
76 28 -8 0.1
79.5 31.5 -7.5 0.1
84.5 30.5 -7.5 0.1
89 32 -9 0.1
92 31.5 -8.5 0.1
94 32 -4 0.1
2 2
0.5 -6.5 -2.5 1.8
0.5 -7 -15 1.8
1 2
0.5 -7 -15 1.8
1.5 -9.5 -16.5 1.5
1 2
1.5 -9.5 -16.5 1.5
1 -12.5 -14.5 0.9
2 5
1 -12.5 -14.5 0.9
4 -15.5 -14.5 0.1
5 -20 -16 0.1
6 -24 -16 0.1
6 -24 -17.5 0.1
6 10
1 -12.5 -14.5 0.9
-1.5 -15.5 -14.5 0.4
-5 -17.5 -15.5 0.2
-8 -19 -15.5 0.2
-11.5 -23 -15.5 0.2
-15 -25.5 -15.5 0.2
-18.5 -28.5 -15.5 0.2
-21 -33.5 -15 0.2
-28 -37.5 -14.5 0.2
-30 -39 -1 0.2
2 5
1.5 -9.5 -16.5 1.5
4 -10 -6 0.2
7 -11 -7.5 0.2
7.5 -13 -7 0.2
8 -13 -7 0.2
7 23
0.5 -7 -15 1.8
3.5 -5 -15.5 0.4
7 -3.5 -15.5 0.4
9.5 -3 -15 0.4
11.5 -1.5 -16 0.4
14.5 -2 -17 0.4
16 0 -16.5 0.4
18 1 -17 0.4
19.5 2.5 -17 0.3
21 3 -17 0.3
23.5 1 -17 0.3
25.5 1.5 -17 0.3
26 0 -14.5 0.3
28 0.5 -16 0.3
30 -1.5 -16.5 0.3
32.5 -2 -16.5 0.3
36 -2 -16.5 0.3
38.5 -3 -16.5 0.3
39.5 -3 -15 0.3
41.5 -0.5 -13.5 0.3
45 0 -13.5 0.1
47 -3 -11.5 0.1
48 -5.5 -10 0.1
2 3
-6.5 -1 -4.5 1.8
-8 -2 -12.5 1.8
-10.5 -2.5 -15 1.8
2 6
-10.5 -2.5 -15 1.8
-13 -5 -13.5 1.4
-14 -4 -15.5 0.8
-15.5 -2.5 -18 0.8
-16 0 -20 0.6
-16 0.5 -24.5 0.6
2 7
-16 0.5 -24.5 0.6
-18.5 1 -26.5 0.1
-19.5 3 -26.5 0.1
-23.5 2.5 -28 0.1
-24.5 1 -30 0.1
-26 2.5 -31 0.1
-26 2.5 -31 0.1
2 5
-16 0.5 -24.5 0.6
-15 3.5 -26.5 0.1
-17.5 6.5 -28.5 0.1
-15.5 9.5 -25 0.1
-16 13.5 -24 0.1
3 9
-10.5 -2.5 -15 1.8
-12.5 0 -14 1.1
-14.5 3 -14.5 1.1
-16.5 4.5 -14.5 1.1
-18 6.5 -14.5 1.1
-19.5 8 -14.5 0.7
-18.5 11 -15.5 0.3
-17.5 15 -15.5 0.3
-17 16.5 -15.5 0.3
4 15
-17 16.5 -15.5 0.3
-17.5 19.5 -15.5 0.1
-19 20.5 -15.5 0.1
-19 22 -15.5 0.1
-20 23.5 -17 0.1
-19.5 26 -17 0.1
-21 26.5 -17 0.1
-21 28.5 -17 0.1
-24 29.5 -17 0.1
-24 32 -16.5 0.1
-26 34.5 -16.5 0.1
-28 35.5 -16.5 0.1
-29 38.5 -17 0.1
-31 38.5 -16 0.1
-31 38.5 -16 0.1
5 11
-17 16.5 -15.5 0.3
-15 19 -15 0.1
-12.5 21.5 -15 0.1
-10.5 25 -13.5 0.1
-9.5 30 -14.5 0.1
-8 33.5 -14.5 0.1
-6.5 37.5 -14.5 0.1
-5 42.5 -13 0.1
-4 47.5 -12.5 0.1
-5 52 -15.5 0.1
-5 52 -15.5 0.1
CONNECTIONS:
0 1
1 1
2 1
2 1
4 1
4 1
6 1
6 1
1 1
0 1
10 1
10 1
0 1
1 1
2 1
2 1
1 1
0 1
0 1
1 1
1 1
0 1
4 1
4 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}