/*----------------------------------------------------------------
%W% %G%
ctt1209e.asc translated Mon Dec 16 17:00:25 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 8.59571 um length = 18.5439 um area = 500.764 um2
12 three-D points; 15 outline points numbered 1-15
outline diameter = 12.3221 um
4 primary neurites
14 branches totaling 509.344 um in length, 659.193 um2 in area
154 tree points translated to 63 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 169
No. trees 5
Text T01209EO, HRP, Silver enhanced, 1/31/89
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[3],\
dend2[13],\
dend3[7],\
dend4[1]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
/* neurite geometry*/
for i = 0,2 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,12 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,6 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,2 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,12 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,6 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,0 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
12
-5.5 -6 -1.5 0
-5 -4.75 -1.5 6.5
-3.5 -2.5 -1.5 11
-2.5 -1.875 -1.75 12.26
-1.5 -0.95 -2 12.939
0 -0.39286 -2 12.255
2 0.15 -2.2 11.715
2.5 0.21875 -2.25 11.448
3.5 1.1562 -2.5 9.3125
6 3 -1 5.831
7 3.5 -2.5 2
7 2.5 -2.5 0
NEURITE COORDINATES AND DIAMETERS:
1 3
2 6 -0.5 4
2.5 8.5 2.5 1.9
2.5 11 5 1.3
4 11
2.5 11 5 1.3
2 13 5 0.1
0 13.5 5 0.1
0 16.5 7.5 0.1
-1.5 18 7.5 0.1
-3.5 22.5 7 0.1
-5.5 22 7 0.1
-8 25 8.5 0.1
-8 28.5 10 0.1
-5.5 32.5 11 0.1
-5.5 34.5 11.5 0.1
5 12
2.5 11 5 1.3
4 13 10.5 1.1
5.5 15 11.5 0.5
7 18 11 0.5
9 21 10 0.5
12 24.5 10 0.5
14.5 26.5 10 0.4
17.5 24.5 10.5 0.4
19.5 24.5 8.5 0.4
22.5 24 10.5 0.4
24.5 24 12.5 0.4
28 26 13 0.1
3 6
0.5 3.5 -2.5 1.1
-1.5 4.5 5 1.1
-5.5 3 7.5 1.1
-9 1.5 7 1.1
-12 0.5 7 1.1
-13.5 -3 8.5 1.2
4 10
-13.5 -3 8.5 1.2
-13.5 -7 8.5 0.1
-12.5 -11 9 0.1
-10.5 -14 8.5 0.1
-7 -16 9 0.1
-2 -16 8.5 0.1
3 -17 8 0.1
4.5 -21 8 0.1
6.5 -24.5 7 0.1
6.5 -27 7 0.1
2 5
-13.5 -3 8.5 1.2
-14.5 -3.5 11.5 1.4
-18 -5 10.5 1.4
-20.5 -6.5 10.5 1.7
-22 -8.5 10.5 1.7
2 6
-22 -8.5 10.5 1.7
-21 -11 11.5 0.1
-20 -13 13 0.1
-16.5 -16 13 0.1
-17.5 -20.5 13 0.1
-17.5 -20.5 13 0.1
1 3
-22 -8.5 10.5 1.7
-24.5 -12 10 0.6
-24.5 -12 12 0.1
4 8
-24.5 -12 12 0.1
-27.5 -18 8 0.1
-29 -21 8.5 0.1
-31.5 -28.5 8.5 0.1
-33.5 -33 8.5 0.1
-35.5 -38.5 4.5 0.1
-35.5 -43 4.5 0.1
-35.5 -45.5 5 0.1
2 8
-24.5 -12 12 0.1
-26.5 -10.5 10.5 0.4
-29 -11.5 10.5 0.4
-29.5 -13 11 0.4
-30.5 -13.5 10.5 0.4
-33.5 -12 11 0.4
-36.5 -12 11.5 0.4
-37 -11 9.5 0.4
3 5
-37 -11 9.5 0.4
-40.5 -14.5 6.5 0.1
-43.5 -20 8 0.1
-45.5 -25.5 8 0.1
-48 -29.5 8.5 0.1
1 3
-37 -11 9.5 0.4
-38.5 -9 7 0.3
-39.5 -7 7.5 0.2
2 7
-39.5 -7 7.5 0.2
-38 -7 6.5 0.1
-36 -5.5 7 0.1
-35.5 -4 6.5 0.1
-32.5 -3 7 0.1
-29.5 -1 5.5 0.1
-28 0 6.5 0.1
1 3
-39.5 -7 7.5 0.2
-41.5 -6.5 7.5 0.4
-42 -4 7.5 0.4
4 11
-42 -4 7.5 0.4
-41.5 -2.5 7.5 0.3
-42 -1 8 0.3
-41.5 2 8.5 0.3
-40 2.5 8.5 0.3
-36.5 3.5 8.5 0.3
-32.5 6 8.5 0.3
-29.5 5.5 8 0.3
-26 8.5 7 0.1
-22.5 9 7 0.1
-18 11 7 0.1
3 9
-42 -4 7.5 0.4
-45 -5.5 7.5 0.1
-46.5 -3 7.5 0.1
-49.5 -4.5 8 0.1
-52.5 -5 8 0.1
-53.5 -6 7.5 0.1
-54.5 -4 7.5 0.1
-58 -3 7.5 0.1
-63 -1.5 4.5 0.1
3 9
-1.5 -6 -2.5 1.5
-2.5 -9.5 0 1.5
-5.5 -12.5 0.5 2
-7.5 -15 1 1.8
-8 -17 1 1.1
-9.5 -18.5 1 1
-11.5 -20.5 4 1.5
-14.5 -25.5 3 0.8
-15 -27.5 4.5 0.8
2 8
-15 -27.5 4.5 0.8
-14 -29.5 4.5 0.4
-11.5 -30 4.5 0.4
-10.5 -31.5 4.5 0.4
-9 -33 6 0.4
-9 -36 3.5 0.1
-9 -39 3.5 0.1
-9 -39.5 3.5 0.1
1 6
-15 -27.5 4.5 0.8
-16.5 -28 5 0.7
-17.5 -28.5 5 0.5
-19 -30 5 1
-20.5 -32 5 1
-21.5 -33 7 1
3 10
-21.5 -33 7 1
-23 -31.5 7.5 0.1
-26 -32.5 7.5 0.1
-27.5 -31.5 7.5 0.1
-31.5 -32.5 8 0.1
-35 -32.5 8 0.1
-35.5 -30.5 8 0.1
-38 -32.5 8 0.1
-41 -31.5 8 0.1
-42.5 -34 8 0.1
2 5
-42.5 -34 8 0.1
-44.5 -34 7.5 0.1
-48.5 -34 8.5 0.1
-54 -37 6 0.1
-54.5 -37 5.5 0.1
3 7
-42.5 -34 8 0.1
-43.5 -37 2.5 0.1
-46.5 -38.5 5.5 0.1
-50 -40.5 4 0.1
-52 -43 4 0.1
-53 -46.5 4 0.1
-56 -49 4 0.1
3 8
-21.5 -33 7 1
-22.5 -37 7.5 0.8
-23 -41.5 5.5 0.5
-24 -44 6 0.5
-25 -47 6 0.3
-26 -50 5 0.3
-28 -53 6.5 0.3
-28 -53 7 0.3
3 11
3.5 -4 -1.5 0.1
4 -5.5 -2 0.1
5.5 -4.5 0 0.1
6.5 -5 0 0.1
7.5 -7 0 0.1
10 -4.5 3.5 0.1
13 -1.5 4.5 0.1
15 0 4.5 0.1
17.5 2 4.5 0.1
19 4.5 3 0.1
20 7 3 0.1
CONNECTIONS:
0 1
0 1
0 1
0 1
2 1
2 1
4 1
4 1
6 1
6 1
8 1
8 1
10 1
10 1
0 1
0 1
2 1
3 1
3 1
2 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}