/*----------------------------------------------------------------
%W% %G%
ctt3219r.asc translated Mon Dec 16 17:00:31 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 11.9541 um length = 21.7894 um area = 818.302 um2
16 three-D points; 19 outline points numbered 1-19
outline diameter = 17.3849 um
4 primary neurites
17 branches totaling 619.808 um in length, 960.986 um2 in area
170 tree points translated to 80 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 189
No. trees 5
Text CTT3219R.GR1
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[19],\
dend2[1],\
dend3[3],\
dend4[7]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
/* neurite geometry*/
for i = 0,18 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,2 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,6 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,18 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,2 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,6 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
16
-9 -2.5 -0.5 0
-8 -2.8333 -0.5 5.3333
-7.5 -2.5625 -0.5 7.125
-6 -2.1875 -0.5 11.625
-5.5 -1.7778 -0.52778 12.556
-2.5 0.055556 -0.69444 16.893
-1.5 0.28571 -0.75 17.579
0.5 0.85714 -0.25 18.721
1 1.15 -0.25 18.707
3 1.55 -0.25 17.107
3.5 1.625 -0.3125 16.754
5 0.5 -0.5 13
6.5 0 -0.5 8
9 -0.33333 -0.5 5.3333
9.5 -0.0625 -0.5 4.125
11 0.5 -0.5 0
NEURITE COORDINATES AND DIAMETERS:
2 5
11 0.5 0 2.5
11.5 1 0.5 2.5
15.5 1.5 3 2.5
18.5 1.5 4.5 2.5
23 0 5 2.2
1 3
23 0 5 2.2
26 1 6 1.6
28.5 1 6 1.6
1 2
28.5 1 6 1.6
31.5 4 7.5 1.6
1 3
31.5 4 7.5 1.6
32 5.5 7.5 0.4
32.5 7.5 8 0.4
6 15
32.5 7.5 8 0.4
35.5 8 10 0.1
37.5 11 12.5 0.1
41.5 11.5 12.5 0.1
43.5 16.5 12.5 0.1
46 17 12.5 0.1
50 21 10.5 0.1
53.5 22 10.5 0.1
58.5 24.5 10.5 0.1
60 28 10.5 0.1
61.5 30.5 9.5 0.1
62.5 34 11 0.1
64.5 36 11 0.1
67 38 11 0.1
68 39 10.5 0.1
5 13
32.5 7.5 8 0.4
31.5 9 9 0.1
29.5 11.5 9 0.1
28.5 14 7.5 0.1
27 15.5 7.5 0.1
26.5 18 7 0.1
25 20.5 8.5 0.1
25 23.5 8 0.1
22 25.5 8 0.1
23 28.5 8 0.1
21.5 33 8 0.1
20 37 8 0.1
20 42 8 0.1
2 5
31.5 4 7.5 1.6
33 3 10.5 1.7
36 3 13.5 1.7
39 3 14.5 1
44.5 3 14 1
4 14
44.5 3 14 1
47 5 15.5 0.9
50.5 7.5 15.5 0.8
51.5 10.5 14.5 0.8
54.5 13.5 14 0.6
54.5 15 14 0.6
53 16 14 0.6
54 20 14 0.6
54 23.5 14 0.6
53 25.5 13.5 0.6
54 27.5 13 0.6
53.5 29 12.5 0.4
54 31 12.5 0.4
54 33 10.5 0.2
6 15
54 33 10.5 0.2
51.5 35.5 10.5 0.1
47 36.5 10.5 0.1
42 38 10.5 0.1
36 40.5 11 0.1
31 42 11 0.1
28 43.5 10.5 0.1
25 46 10.5 0.1
21.5 46 10.5 0.1
15.5 44.5 12 0.1
11.5 42.5 12 0.1
7.5 41.5 12 0.1
4 43.5 12 0.1
1 43.5 12.5 0.1
1 43.5 12.5 0.1
3 7
54 33 10.5 0.2
56.5 35 10 0.1
58 38 12 0.1
61 40.5 11.5 0.1
62 43.5 11.5 0.1
63.5 45.5 10.5 0.1
67.5 47.5 10.5 0.1
1 3
44.5 3 14 1
47 1 15 0.1
49 -0.5 15 0.1
1 4
28.5 1 6 1.6
29 -1 6 0.1
32 -3.5 6 0.1
32 -3.5 6 0.1
1 3
32 -3.5 6 0.1
34 -2 5.5 0.1
35 -0.5 5.5 0.1
2 4
32 -3.5 6 0.1
33.5 -6 6 0.1
36 -9 4.5 0.1
36 -12 4.5 0.1
2 5
23 0 5 2.2
23.5 -2 5 1.2
24 -5.5 5 1.2
25 -8 6 1.1
28 -12 6.5 1.1
2 5
28 -12 6.5 1.1
30.5 -11.5 7.5 0.1
32 -10.5 5 0.1
37 -10.5 8 0.1
40.5 -12 9 0.1
3 8
28 -12 6.5 1.1
28 -14 5.5 0.6
31 -16.5 5.5 0.6
32.5 -18.5 5.5 0.6
32.5 -22 5.5 0.6
34 -23 5.5 0.6
37 -23 7.5 0.6
44.5 -23 7 0.6
2 4
44.5 -23 7 0.6
47 -21 8 0.3
54.5 -18 8 0.3
59 -17.5 7 0.3
1 3
44.5 -23 7 0.6
46.5 -25.5 6.5 0.1
50.5 -28 7.5 0.1
4 14
3 10.5 -0.5 2.2
4 13 -0.5 1.5
2.5 16.5 1.5 0.9
1.5 19.5 0.5 0.7
3 21.5 -2 0.6
3 24 -2.5 0.4
3 25 -1 0.2
1.5 26.5 -1 0.1
2 28.5 -1 0.1
3.5 29 -1.5 0.1
5.5 30 -1.5 0.1
5 32.5 -5 0.1
4 36 -5 0.1
4 36 -5 0.1
5 7
-8 -2 -1 0.9
-10 -2.5 5.5 0.6
-14.5 -3.5 5.5 0.6
-19 -4 5.5 0.6
-25.5 -5 5.5 0.6
-35.5 -5.5 5.5 0.6
-48 -6 5.5 0.6
3 9
-48 -6 5.5 0.6
-49 -4 5.5 0.5
-50.5 -1.5 5.5 0.5
-45.5 1.5 4.5 0.2
-45 4.5 5.5 0.2
-43.5 6 5.5 0.2
-44.5 8.5 5.5 0.2
-42 11.5 6 0.2
-41.5 14 6 0.2
4 8
-48 -6 5.5 0.6
-51 -7.5 5 0.2
-57 -8.5 7 0.2
-60 -8.5 7 0.2
-63.5 -6 7 0.2
-68 -3.5 7 0.1
-73.5 -0.5 7 0.1
-77 0 8.5 0.1
1 2
-1 -7.5 0 2.1
-1 -12 5 2.1
2 4
-1 -12 5 2.1
1.5 -15 5 1.2
2.5 -19 4 1.2
3 -21 5 1.2
2 4
3 -21 5 1.2
5 -24 5 0.4
6.5 -28 6 0.1
6.5 -31.5 6 0.1
1 3
3 -21 5 1.2
1 -24 4.5 0.1
0 -26 4.5 0.1
3 6
-1 -12 5 2.1
-3 -12 5.5 1.2
-5.5 -14 7 1.2
-7.5 -18 6.5 1.2
-10 -21.5 2.5 0.8
-15 -24 2.5 0.8
3 6
-15 -24 2.5 0.8
-16.5 -27 2.5 0.4
-18 -31 4.5 0.2
-21 -33.5 4 0.1
-25.5 -34.5 4 0.1
-29 -35 4 0.1
5 12
-15 -24 2.5 0.8
-17 -23 3 0.4
-22 -22 2 0.4
-26 -21 2 0.4
-30.5 -20.5 2 0.4
-35.5 -20.5 3.5 0.4
-38 -22.5 3.5 0.4
-40.5 -24.5 3.5 0.2
-44.5 -28.5 4.5 0.2
-49 -32 4.5 0.2
-51 -33 8 0.2
-53.5 -34 5.5 0.2
CONNECTIONS:
0 1
1 1
2 1
3 1
3 1
2 1
6 1
7 1
7 1
6 1
1 1
11 1
11 1
0 1
14 1
14 1
16 1
16 1
0 1
0 1
0 1
1 1
1 1
0 1
4 1
4 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}