/*----------------------------------------------------------------
%W% %G%
ctt7259b.asc translated Mon Dec 16 17:00:33 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 8.18139 um length = 14.6395 um area = 376.272 um2
10 three-D points; 12 outline points numbered 90-101
outline diameter = 12.1005 um
4 primary neurites
22 branches totaling 794.323 um in length, 1428.24 um2 in area
235 tree points translated to 45 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 263
No. trees 6
Text CTT7259B.GR1, HRP and silver enhancement
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[9],\
dend2[1],\
dend3[1],\
dend4[6]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
/* neurite geometry*/
for i = 0,8 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,5 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,8 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,0 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,5 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
10
-8.5 -2.5 -9 0
-8.5 -1.5 -9 2
-7.5 -1.125 -8.375 5.3033
-6.5 -1.25 -8.25 7.5166
-5 -1.1 -8.25 10.212
-4 -1.375 -8.25 11.261
-1 -1 -8.25 12.01
3 -1.1111 -8.4722 7.778
3.5 -0.58333 -8.5 6.1667
4.5 -1 -8.5 0
NEURITE COORDINATES AND DIAMETERS:
2 5
-4.5 9 -1.5 1.8
-5.5 10 0 1.8
-8 12 0 1.8
-7 15.5 2 2
-6.5 17 4 2
2 4
-6.5 17 4 2
-7 19.5 2 1.4
-6 22.5 3.5 1.4
-5 26 3 1.4
3 9
-5 26 3 1.4
-3.5 28.5 5 0.7
-1 30.5 5 0.7
1 33 5.5 0.7
1.5 36 6.5 0.4
3.5 37.5 6.5 0.4
4.5 40.5 5.5 0.4
6 43 7.5 0.4
6.5 48 8.5 0.4
2 6
6.5 48 8.5 0.4
8 49.5 7 0.1
10 52 9 0.1
11.5 54 9 0.1
13 57.5 7 0.1
14 60.5 7.5 0.1
2 7
6.5 48 8.5 0.4
5 49 8.5 0.2
4 51 7.5 0.2
2 53 8 0.2
0.5 55 7.5 0.2
-1 59.5 7.5 0.2
0 62.5 8 0.2
3 9
-5 26 3 1.4
-6.5 27 5 0.8
-6.5 28 7 0.8
-6 30 7.5 0.5
-6.5 32 8 0.5
-8 33 10 0.5
-11.5 33 11 0.5
-15 31.5 10.5 0.5
-16.5 32 11 0.1
1 4
-16.5 32 11 0.1
-19 35 11 0.1
-20 38.5 11 0.1
-20 38.5 11 0.1
1 4
-16.5 32 11 0.1
-20.5 30.5 10 0.1
-23 31.5 9.5 0.1
-23 31.5 9.5 0.1
10 27
-6.5 17 4 2
-5.5 19.5 5 0.6
-5 22 6 0.6
-3.5 23.5 9 0.6
-0.5 25 9 0.6
2 24 10 0.6
4 21.5 9.5 0.6
6.5 19.5 10 0.6
8.5 17.5 9 0.6
12 15 7 0.6
14 15 6 0.6
16 12.5 5 0.3
18.5 11 5.5 0.3
19.5 7 4.5 0.3
23 4.5 4 0.3
25.5 2.5 2.5 0.3
25.5 0 2 0.3
28 -3 3 0.3
30.5 -4.5 4.5 0.3
32 -8 5 0.3
35.5 -9 5 0.3
37.5 -12 5.5 0.1
39.5 -14 2.5 0.1
41.5 -18.5 2.5 0.1
45.5 -18 2 0.1
47 -24 0.5 0.1
49.5 -26 -1 0.1
3 6
5 -4 -1.5 0.3
6 -1.5 1 0.3
7.5 0.5 0 0.1
9.5 4.5 1 0.1
14 8 -0.5 0.1
16 10.5 -1.5 0.1
4 11
-9.5 -1 -8 2
-12 -1 -5.5 2
-14.5 -1 -6 1.5
-15.5 -0.5 -5 1.5
-15.5 -2 -5 1.1
-18.5 -3.5 -3 1.1
-21.5 -3.5 -1 1.1
-23 -2.5 -1.5 1.1
-25 -6 2 0.3
-28 -8 -2 0.3
-30.5 -11 -2 0.1
2 5
2 -8.5 0.5 4.4
3 -11 0.5 4.4
4.5 -15 1 4.4
5 -21 1.5 3.4
5 -21 1.5 3.4
1 3
5 -21 1.5 3.4
9.5 -23 1 3.3
10 -27 1 3.3
4 10
10 -27 1 3.3
13.5 -26.5 1 0.2
15.5 -27.5 3 0.2
20.5 -27 3.5 0.2
24 -28 3.5 0.2
28 -26.5 3.5 0.2
32.5 -28.5 3.5 0.2
37 -28 3.5 0.2
41 -28 3 0.2
44 -29 3 0.2
1 3
5 -21 1.5 3.4
3 -21.5 2 0.8
0.5 -23 1.5 0.8
1 4
0.5 -23 1.5 0.8
0.5 -25.5 1 0.4
1 -28 0 0.4
2 -31.5 -2.5 0.1
2 6
0.5 -23 1.5 0.8
-2.5 -23 1 0.3
-5 -26 1 0.3
-8 -29 1 0.1
-8 -33.5 0.5 0.1
-7.5 -35.5 1 0.1
CONNECTIONS:
0 1
1 1
2 1
2 1
1 1
5 1
5 1
0 1
0 1
1 1
0 1
3 1
3 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}