/*----------------------------------------------------------------
%W% %G%
ctty118d.asc translated Mon Dec 16 17:00:36 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 9.26972 um length = 27.329 um area = 795.867 um2
16 three-D points; 20 outline points numbered 1-20
outline diameter = 16.9022 um
6 primary neurites
21 branches totaling 1101.01 um in length, 1917.31 um2 in area
339 tree points translated to 127 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 359
No. trees 7
Text T11118DO, HRP and DAB, good stain, 2/2/89
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[3],\
dend2[1],\
dend3[29],\
dend4[1],\
dend5[1],\
dend6[1]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
soma connect dend5[0] (0), 0.5
soma connect dend6[0] (0), 0.5
/* neurite geometry*/
for i = 0,2 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,28 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend5[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend6[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,2 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,28 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,0 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
for i = 1,0 {
dend5[fscan()] connect dend5[i] (0), fscan()
}
for i = 1,0 {
dend6[fscan()] connect dend6[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
16
-12.5 -4.5 -0.5 0
-11 -4.1 -0.2 2.8636
-10 -4 0 5.099
-9.5 -3.9643 -0.17857 6.1054
-6.5 -2.4643 -1.4643 9.9862
-6 -2.3438 -1.4688 10.355
-2.5 -1.5 -1.25 13.01
0 -1 -2 13.038
2 0 -2.125 13.022
4 1.75 -2.25 11.511
5.5 2.7 -2.25 11.411
6.5 3.5 -2.45 11.037
8 3.7812 -2.9375 8.6361
10 4.1562 -3.1875 5.3491
10.5 4.25 -3.1875 4.5156
12 3.5 -3 0
NEURITE COORDINATES AND DIAMETERS:
1 4
6.5 8.5 -2.5 1.1
7 11 -2.5 0.8
9 11.5 -1 0.5
9 11.5 1 0.5
1 2
9 11.5 1 0.5
9 14.5 1 0.1
1 2
9 11.5 1 0.5
10.5 11 0 0.1
9 29
10 6.5 0 2.5
10 7.5 2.5 2.5
10.5 9 4.5 1
10.5 10.5 2.5 1
12 12.5 1.5 1
12 15 2.5 0.8
11 16.5 3.5 0.8
12.5 19.5 6 0.6
13.5 22 7.5 0.6
12.5 27.5 6.5 0.6
13.5 32 6 0.6
13.5 34 6.5 0.6
14.5 37.5 6 0.6
15 40.5 7.5 0.5
18 42.5 8.5 0.5
19.5 44 9 0.5
18.5 47 10.5 0.5
18.5 50 9.5 0.5
16 52 9.5 0.2
16.5 53 9.5 0.2
19.5 53.5 8 0.2
20.5 56.5 7 0.2
19.5 58.5 8 0.2
20.5 62 8 0.2
21.5 65.5 10 0.1
23 67 10 0.1
25 67.5 9 0.1
24.5 71 10.5 0.1
24.5 71 10.5 0.1
2 3
6.5 4 -0.5 5.2
8.5 2 11 3.8
12 1 12.5 3.8
5 17
12 1 12.5 3.8
15.5 0 12 2
19 0.5 14 2
23 1.5 16.5 2
24.5 2 17 2
28 2.5 17.5 1.4
30 1 16.5 1.4
32.5 -0.5 17 1.4
35 -0.5 18 1.4
39 1 16.5 1.4
41 2 16 1.4
43 2 15.5 1.1
44 0 15.5 1.1
42 -0.5 15.5 0.8
42 1 15.5 0.8
47.5 0 16.5 0.8
48.5 0 16 0.8
4 12
48.5 0 16 0.8
54 1 19 0.7
56.5 3.5 17 0.7
60 4.5 16.5 0.7
60.5 3.5 21.5 0.7
58 3 21.5 0.7
56 4 22.5 0.7
58.5 4.5 22 0.7
60 5.5 24.5 0.7
57.5 7 25 0.7
54.5 9.5 24 0.7
54.5 12 25 0.6
1 4
54.5 12 25 0.6
59 14.5 25 0.1
61 17 25 0.1
61.5 17 25 0.1
5 13
54.5 12 25 0.6
56.5 15 25.5 0.5
55.5 17.5 25.5 0.5
56.5 20.5 25 0.5
58.5 24 26 0.5
59 27.5 26 0.5
56.5 32.5 23.5 0.5
55 35 24.5 0.5
52.5 36.5 25 0.5
52.5 39.5 23.5 0.5
50 40 24.5 0.5
46 40.5 24 0.5
44 41 24 0.5
1 3
44 41 24 0.5
43.5 43 23.5 0.1
39 44 23.5 0.1
3 9
44 41 24 0.5
40 39.5 23 0.4
40 41.5 23 0.4
38.5 43 23 0.4
37 44.5 23 0.4
36.5 47.5 23 0.2
35 49 22 0.2
33.5 49.5 21.5 0.2
33 52.5 21.5 0.2
1 2
33 52.5 21.5 0.2
32.5 50.5 22 0.1
1 4
33 52.5 21.5 0.2
31.5 53 19 0.1
31 55.5 23 0.1
30.5 57 22.5 0.1
5 12
48.5 0 16 0.8
49 1.5 12.5 0.8
51 5 11 0.8
49 7.5 9.5 0.8
45.5 8.5 7 0.8
43 10 7.5 0.8
41.5 13 8 0.8
37 13.5 10 0.8
34 15.5 11 0.8
30 15.5 11 0.8
28 18 11 0.8
27 20.5 9 0.8
1 4
27 20.5 9 0.8
26 23 10 0.8
24 23.5 11 0.6
22 26.5 11 0.6
7 24
22 26.5 11 0.6
20.5 27.5 10 0.4
18.5 28.5 10.5 0.4
18 30 10.5 0.4
18 31.5 11.5 0.4
17.5 32.5 9.5 0.4
13 34 9 0.4
9 35.5 8.5 0.4
7 36 9.5 0.4
5.5 34.5 12 0.2
3 35.5 12 0.2
2 37.5 12.5 0.2
0.5 39 12.5 0.2
-3 38.5 13 0.1
-5 39.5 13 0.1
-5.5 41.5 14 0.1
-7 42 14.5 0.1
-10 43 14.5 0.1
-12 45.5 15.5 0.1
-15 45.5 16 0.1
-17 49 17.5 0.1
-16.5 54 18 0.1
-17.5 56 18.5 0.1
-18 58.5 19.5 0.1
5 13
22 26.5 11 0.6
24 30 9.5 0.3
26 32 7 0.3
32 31.5 6.5 0.3
34 32 6 0.3
38 33 5.5 0.2
41.5 33 3 0.2
44 32 4 0.2
46.5 32.5 4 0.2
50 32.5 4 0.2
54.5 35 3.5 0.2
58 37 5 0.2
58 37 5 0.2
1 3
58 37 5 0.2
60 43 3.5 0.2
60 46 4 0.2
3 6
58 37 5 0.2
62 36 5.5 0.2
67 37.5 5.5 0.2
72.5 39 5.5 0.2
77 40.5 4 0.2
80.5 42 4 0.2
8 22
27 20.5 9 0.8
27 24.5 8 0.4
28.5 26 7 0.4
31 26.5 5.5 0.4
32 26.5 6 0.4
33.5 30.5 6.5 0.4
34.5 33 5.5 0.4
38 36 5.5 0.4
40.5 40.5 4.5 0.4
41.5 42.5 7 0.4
45.5 43 8 0.4
45.5 45.5 7.5 0.4
45.5 48 10 0.4
47.5 47.5 10 0.2
49 47 11.5 0.2
51 50.5 11.5 0.2
54 54 12.5 0.2
58.5 58.5 12 0.2
61 62.5 12.5 0.2
62 64 12.5 0.2
63 65 13 0.2
65.5 66 13.5 0.2
3 8
65.5 66 13.5 0.2
68 64 14.5 0.1
69.5 62.5 14.5 0.1
72 65 14.5 0.1
74 64.5 14.5 0.1
76 66.5 14.5 0.1
79 68.5 14.5 0.1
81.5 68.5 15 0.1
2 6
65.5 66 13.5 0.2
67.5 68.5 11.5 0.1
68.5 70 12 0.1
71.5 74 9 0.1
72.5 76.5 10 0.1
72.5 79 12 0.1
3 9
12 1 12.5 3.8
11.5 4 10.5 1.3
10.5 7 10.5 1.3
8.5 9 11 1.3
6.5 9.5 14 1.3
6 11.5 16.5 1.3
9 14.5 18 1.3
11.5 14.5 17.5 1.3
10.5 12.5 19 1.3
4 9
10.5 12.5 19 1.3
9 11.5 19 1.3
5 13 21 1.3
2.5 16 21 1.3
1.5 19.5 22 1.3
-3.5 21 24 1.3
-7.5 25 26.5 1.3
-10 28 26.5 1.3
-13 29 25.5 1.3
10 26
-13 29 25.5 1.3
-15 32.5 26 1
-17 36 24 1
-18 36 24.5 1
-19 40.5 21.5 1
-19 42.5 21.5 1
-18.5 45 22.5 0.8
-20.5 48 24 0.8
-21 50.5 27 0.8
-21.5 53.5 29.5 0.4
-21 57 30.5 0.4
-20.5 60 30.5 0.4
-17.5 62 29 0.4
-16.5 64 29.5 0.4
-19 68 30 0.4
-16.5 73.5 29 0.4
-16 76.5 28.5 0.4
-12.5 83 29.5 0.4
-11 83 26 0.4
-9.5 85.5 27.5 0.1
-8.5 87.5 28 0.1
-7.5 94 29.5 0.1
-7.5 96 26 0.1
-5.5 99.5 29.5 0.1
-4.5 102.5 29.5 0.1
-4 106.5 30.5 0.1
3 8
-13 29 25.5 1.3
-16 32 24.5 0.9
-18.5 32.5 25.5 0.9
-22.5 32.5 25.5 0.9
-27 33 26 0.6
-33.5 33 27 0.6
-37 36 26 0.6
-38 37.5 26.5 0.6
11 27
-38 37.5 26.5 0.6
-39 41 26 0.5
-39 44.5 26.5 0.5
-39 46 26.5 0.5
-40 50.5 27 0.5
-38.5 54.5 26.5 0.5
-36 58.5 28.5 0.6
-32 62 29 0.6
-32 65 29.5 0.6
-32 67.5 31.5 0.6
-29.5 72.5 30 0.6
-26.5 76.5 30 0.3
-25 78 30.5 1.2
-22.5 81.5 30.5 0.3
-21.5 85 32 0.3
-23 88.5 29 0.3
-21 90 31 0.3
-17.5 93.5 29 0.3
-16.5 96.5 28.5 0.3
-16 99 28.5 0.3
-14 102.5 29 0.3
-10.5 107.5 29 0.3
-10.5 111 28.5 0.3
-10 112.5 27 0.3
-8.5 115 26.5 0.3
-8.5 118 27 0.3
-7.5 121.5 27.5 0.3
1 4
-7.5 121.5 27.5 0.3
-9.5 125 27.5 0.1
-11 127 28 0.1
-11 127 28 0.1
1 4
-7.5 121.5 27.5 0.3
-7 123.5 26.5 0.4
-7 126 27 0.4
-8 128 27.5 0.4
1 4
-38 37.5 26.5 0.6
-41 39 26 0.4
-44.5 39 26 0.4
-47 40 25.5 0.1
2 6
-47 40 25.5 0.1
-50 40.5 24.5 0.1
-52 37 26 0.1
-52 34.5 26.5 0.1
-52 30.5 28 0.1
-52 28.5 28 0.1
2 7
-47 40 25.5 0.1
-48 42 26.5 0.1
-48 44 26.5 0.1
-45.5 46.5 26.5 0.1
-44.5 47.5 25.5 0.1
-42.5 52 27 0.1
-42.5 53.5 27 0.1
6 23
10.5 12.5 19 1.3
12 13.5 18.5 0.6
11 11 18.5 0.6
11.5 9 18.5 0.6
13 8.5 18.5 0.6
15.5 9 18 0.6
16 9 19 0.5
16.5 7 19.5 0.5
17.5 6.5 20.5 0.5
20.5 10 21.5 0.5
21.5 9 21.5 0.5
23 6.5 22 0.5
21.5 11.5 22 0.5
24 12 23 0.5
25.5 11 23 0.4
28 10 23 0.4
29 11.5 25 0.4
29.5 13 25 0.4
32 13 25 0.4
34.5 13.5 24.5 0.4
38 14 23.5 0.4
41.5 12 24 0.4
43.5 11.5 26 0.1
3 10
2 -4.5 -4.5 0.1
-0.5 -6.5 -1 0.1
-3 -9 -1 0.1
-3 -11 1 0.1
-4.5 -14.5 2 0.1
-5.5 -15 3 0.1
-6 -17 3.5 0.1
-4 -19.5 3.5 0.1
-4.5 -20.5 4.5 0.1
-5.5 -22.5 6.5 0.1
5 16
-3.5 -1.5 -0.5 0.6
-5.5 -3 -1.5 0.5
-7 -4.5 -1 0.5
-9.5 -5.5 -1.5 0.5
-12.5 -4.5 -3.5 0.5
-16 -4.5 -4 0.5
-17.5 -5 -5 0.4
-18.5 -8.5 -4 0.4
-21.5 -7 -4 0.4
-26 -7.5 -4.5 0.1
-29 -7 -4.5 0.1
-32 -8.5 -1.5 0.1
-35 -10 -1.5 0.1
-40.5 -8.5 -1.5 0.1
-44.5 -10.5 -1 0.1
-44.5 -10.5 -1 0.1
4 14
0 -3.5 -4.5 0.1
-0.5 -7 -0.5 0.1
-2.5 -8 -0.5 0.1
-3 -10 0.5 0.1
-2.5 -12.5 0.5 0.1
-6 -15 1 0.1
-5.5 -18 3.5 0.1
-4.5 -19.5 5.5 0.1
-4.5 -22 7 0.1
-5.5 -20.5 8 0.1
-4.5 -19 7.5 0.1
-3 -20.5 7 0.1
-2.5 -22 8 0.1
-2.5 -22.5 7.5 0.1
CONNECTIONS:
0 1
0 1
0 1
1 1
2 1
2 1
4 1
4 1
6 1
6 1
1 1
9 1
10 1
10 1
12 1
12 1
9 1
15 1
15 1
0 1
18 1
19 1
19 1
21 1
22 1
22 1
21 1
25 1
25 1
18 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}