/*----------------------------------------------------------------
%W% %G%
ctty238a.asc translated Mon Dec 16 17:00:37 1996 by ntscable 2.0
source file syntax: Eutectic
output file syntax: CABLE
soma: diameter = 12.9355 um length = 23.9977 um area = 975.215 um2
20 three-D points; 22 outline points numbered 1-22
outline diameter = 18.8898 um
4 primary neurites
20 branches totaling 1062.96 um in length, 2179.15 um2 in area
332 tree points translated to 124 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
branch points.
Segment length constrained to be < 10 um.
No. points 354
No. trees 5
Text T11238AO, HRP and DAB, 1/13/89
----------------------------------------------------------------*/
/* create sections */
create soma,\
dend1[13],\
dend2[1],\
dend3[19],\
dend4[3]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
soma connect dend2[0] (0), 0.5
soma connect dend3[0] (0), 0.5
soma connect dend4[0] (0), 0.5
/* neurite geometry*/
for i = 0,12 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,0 {
dend2[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,18 {
dend3[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
for i = 0,2 {
dend4[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,12 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
for i = 1,0 {
dend2[fscan()] connect dend2[i] (0), fscan()
}
for i = 1,18 {
dend3[fscan()] connect dend3[i] (0), fscan()
}
for i = 1,2 {
dend4[fscan()] connect dend4[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
20
-10.5 4 -1 0
-9 3 -0.75 5.0249
-8.5 2.625 -0.75 6.7685
-8 2.25 -0.75 8.5147
-7 2 -0.875 11.003
-6 1.6786 -1 13.357
-4.5 1.3214 -1 16.643
-3.5 1.25 -0.83333 18.503
-3 1.05 -0.75 19.107
-1 0.85 -0.95 20.3
-0.5 0.75 -1.0714 20.5
1.5 0.75 -1.3571 20.512
2.5 1 -1.5 20.025
3.5 0.85 -1.5 18.727
5 0.625 -1.375 16.797
6.5 -0.5 -1.25 13.086
7.5 -0.125 -2.25 9.7628
8.5 0.5 -2 6
8.5 -0.75 -2.25 3.5355
8.5 -2.5 -2 0
NEURITE COORDINATES AND DIAMETERS:
3 9
6.5 -3 -1 3.4
10 -4 4.5 2.9
13 -5 4.5 2.4
14.5 -5 5 1.9
16.5 -3.5 6 1.9
18.5 -3.5 5 1.7
20 -4.5 6.5 1.5
22 -5.5 9 2.6
22.5 -5 11.5 2.6
4 13
22.5 -5 11.5 2.6
26 -5.5 9 1.1
28.5 -6 8.5 0.8
29.5 -7 8.5 0.8
32.5 -5.5 8.5 0.8
35 -7.5 9 0.8
39 -7 14 0.8
39 -4.5 14 0.5
41 -5 12 0.4
43.5 -4.5 12.5 0.4
46 -3 12.5 0.4
49 -1.5 11.5 0.4
51 0 10 0.1
2 6
22.5 -5 11.5 2.6
22 -3.5 12 0.7
21.5 -1.5 13 0.7
21.5 0.5 13 0.7
20 3 13 0.7
20.5 6.5 14.5 1.8
4 13
20.5 6.5 14.5 1.8
23.5 6 14 0.9
26 5.5 14 0.5
28 3.5 17 0.5
30 1 17 0.5
31.5 -0.5 17 0.3
33 -2.5 17.5 0.3
35.5 -6 18 0.1
35 -10 18 0.1
37 -11.5 16 0.1
39 -12 15.5 0.1
42.5 -13 15.5 0.1
46 -15.5 13.5 0.1
1 4
20.5 6.5 14.5 1.8
20.5 9 14 1
21 12 14.5 1
22 14 14.5 1
4 11
22 14 14.5 1
23.5 14.5 13 0.6
26.5 13 13.5 0.6
27.5 12 16.5 0.6
30 10.5 15.5 0.6
32.5 9 15 0.4
35.5 7.5 15.5 0.4
38 8 15.5 0.4
40.5 8 15.5 0.4
42 9.5 15.5 0.7
42.5 14.5 17.5 0.1
1 2
42.5 14.5 17.5 0.1
45.5 17.5 22 0.1
2 8
42.5 14.5 17.5 0.1
42.5 17.5 13.5 0.1
43.5 20 13.5 0.1
43.5 22 14 0.1
42 24.5 14.5 0.1
41.5 26 14 0.1
44 28 14 1.1
44 28 14 0.1
3 9
44 28 14 0.1
47.5 27.5 14 0.1
49.5 27.5 14 0.1
52.5 29 14.5 0.1
52.5 26.5 13 0.1
56 27 14 0.1
62 28 14 0.1
64.5 28 14 0.1
67.5 28 14 0.1
3 10
44 28 14 0.1
42 30 14 0.1
42.5 32 14 0.1
43 35.5 13 0.1
43 38.5 14 0.1
43 41.5 14.5 0.1
45.5 44.5 15 0.1
46.5 47 15 0.1
47.5 52.5 16 0.1
47.5 52.5 16 0.1
3 11
22 14 14.5 1
20.5 15 14 0.7
19.5 16.5 14 0.7
18 18.5 14 0.7
18 20.5 14 0.7
16.5 22 10.5 0.7
17 24 10.5 0.7
17.5 26.5 10.5 0.7
18.5 28.5 11 0.7
19.5 31.5 11 1.7
19.5 31.5 11 1.7
2 5
19.5 31.5 11 1.7
23 31 11 0.4
24.5 31.5 11.5 0.4
27 32.5 11.5 0.4
30 32.5 12 0.1
4 14
19.5 31.5 11 1.7
19 34 11 0.1
20 35.5 10.5 0.1
18 37 10.5 0.1
19 39.5 11 0.1
17.5 41.5 11.5 0.1
18.5 43.5 12 0.1
17.5 45 12.5 0.1
17.5 47 11.5 0.1
16 49 11 0.1
16 51 11.5 0.1
14.5 53 13.5 0.1
13 57.5 13.5 0.1
13 60 13.5 0.1
7 20
-2.5 8 -3 0.4
-2.5 9.5 10.5 0.4
-2 13.5 8 0.4
-2.5 14.5 8 0.4
-3.5 16 8 0.4
-3.5 18.5 8 0.4
-3 19.5 9 0.4
-3.5 21 10.5 0.4
-3 23.5 11 0.4
-4.5 26 9 1
-5.5 29 9 0.7
-6.5 33.5 9 0.7
-8.5 34.5 9.5 0.7
-10 37 10.5 0.7
-11 38.5 12.5 0.2
-12.5 37.5 12 0.2
-13.5 40.5 12.5 0.2
-16 42 9.5 0.1
-17 46 10 0.1
-17 46 10 0.1
2 3
-7.5 1 -1.5 4.3
-9 2 10.5 4.3
-11 6 11 6.2
1 3
-11 6 11 6.2
-16 8 11.5 2
-17 9.5 13.5 2.7
2 6
-17 9.5 13.5 2.7
-19.5 10.5 14 0.8
-22.5 11 15.5 0.8
-24.5 12 15.5 0.8
-27 14.5 12.5 0.8
-27 16.5 12 0.1
6 15
-17 9.5 13.5 2.7
-15.5 12 19.5 2.5
-17.5 14 19.5 1.8
-19.5 16.5 20 1.8
-22 20 20 1.8
-26.5 24.5 17 1.6
-27.5 25.5 17 1.6
-28 30 17 1.6
-30.5 33.5 17.5 1.1
-31.5 37.5 18 1.1
-31.5 40.5 18.5 1.1
-31.5 44 18 0.6
-31.5 47.5 18.5 0.6
-31.5 50.5 18.5 0.1
-32 55.5 17 0.1
1 3
-11 6 11 6.2
-9 10.5 12.5 3.6
-7 14.5 13 3.6
3 10
-7 14.5 13 3.6
-4.5 16.5 13 1.5
-3.5 19 15 1.5
-2.5 22 15.5 1.5
-1.5 22 15 1.2
-1 24.5 14 1.2
0.5 26.5 15 1
3 30 14.5 0.8
4.5 34 14 0.8
4 37 13 1.1
2 5
4 37 13 1.1
6 39 13 0.1
8.5 41 13.5 0.1
9 46 14.5 0.1
8 48.5 14 0.1
1 3
4 37 13 1.1
2 37.5 15 1
2 37.5 16 1
2 5
2 37.5 16 1
2 42.5 16.5 0.1
0.5 46 18 0.1
-1.5 49 19.5 0.1
-1.5 51 19.5 0.1
4 13
2 37.5 16 1
0.5 39 13.5 0.6
-1.5 40.5 13.5 0.6
-3 43.5 12 0.6
-5.5 43.5 12 0.3
-6.5 45.5 11 0.3
-8 47 11 0.3
-8.5 50 11 0.3
-6.5 53 11.5 0.3
-5 56 11.5 0.3
-2.5 59 12 0.3
-1 61.5 9.5 0.3
-1 63.5 9.5 0.3
2 4
-7 14.5 13 3.6
-9 17 11 2.7
-9 19.5 11 1.4
-11.5 22.5 11 1.4
2 7
-11.5 22.5 11 1.4
-13 24.5 9.5 0.1
-15.5 25.5 9.5 0.1
-20 25 9.5 0.1
-22.5 25 9.5 0.1
-24 26.5 10 0.1
-27.5 29 12 0.1
3 9
-27.5 29 12 0.1
-30.5 31 12 0.1
-33.5 34 12 0.1
-35 34 12 0.1
-37 34 12 0.1
-39 37 12.5 0.1
-41 37 12.5 0.1
-46.5 37 13 0.1
-50.5 36.5 12.5 0.1
8 23
-27.5 29 12 0.1
-27.5 32.5 16 0.1
-29 34.5 12.5 0.1
-29.5 37 11.5 0.1
-30 38.5 9 0.1
-30.5 39.5 9 0.1
-33.5 40 11.5 0.1
-35 43 11.5 0.1
-38 46.5 9.5 0.1
-39.5 48.5 9.5 0.1
-40.5 50.5 11.5 0.1
-42.5 53.5 14 0.1
-45.5 55 14.5 0.1
-50.5 54.5 12 0.1
-53 55 12 0.1
-55.5 54 12 0.1
-57.5 54 12 0.1
-60 54 13.5 0.1
-63.5 55 14 0.1
-66 56 14.5 0.1
-66.5 58.5 14.5 0.1
-66.5 62 10.5 0.1
-66.5 64 11.5 0.1
5 17
-11.5 22.5 11 1.4
-10.5 24.5 11 1
-9.5 27 11.5 1
-11 28.5 11.5 1
-12 30 11.5 1
-12.5 32.5 11.5 1
-13 35 11.5 1
-16.5 37 11.5 1
-16.5 41.5 11.5 1
-20 43.5 11 1
-20 46 12.5 0.8
-21 47.5 10.5 0.8
-23.5 48.5 10.5 0.8
-26 50 10.5 0.8
-28 52.5 10 0.8
-29.5 55 10 0.8
-31.5 56.5 11 0.8
2 6
-31.5 56.5 11 0.8
-31.5 59 13 0.5
-31 61.5 13 0.5
-31 63 13 0.5
-31 65 13 0.5
-30 66.5 14.5 0.5
7 20
-30 66.5 14.5 0.5
-28.5 67.5 12.5 0.2
-28 69.5 12.5 0.2
-27.5 70.5 12.5 0.2
-26 73 12 0.2
-25.5 74.5 12 0.2
-24 78.5 12.5 0.2
-24 81 14 0.2
-23.5 85.5 12 0.2
-24 88 12 0.2
-21.5 92 12 0.2
-19.5 96 12 0.2
-19 100.5 12 0.2
-20 107 12 0.2
-20.5 111.5 12 0.2
-20.5 116 12.5 0.2
-19 118.5 13 0.2
-18 124 14.5 0.2
-20.5 126.5 15 0.2
-20.5 129 16.5 0.2
8 23
-30 66.5 14.5 0.5
-32.5 68 15 0.2
-35 68.5 15 0.2
-37.5 69 15 0.2
-39 71 15 0.2
-41 73 15 0.2
-43 76 15.5 0.2
-46.5 78.5 16 0.2
-50.5 80.5 16 0.2
-55 81.5 16.5 0.2
-59 85 16.5 0.2
-62 88.5 16.5 0.2
-65 91 16.5 0.2
-66 92.5 16 0.2
-66.5 94.5 17 0.2
-67.5 96.5 14.5 0.1
-67.5 100.5 14.5 0.1
-70 104 14.5 0.1
-71 106.5 14.5 0.1
-72.5 108 14.5 0.1
-74.5 111 15 0.1
-74.5 115.5 15 0.1
-74.5 115.5 15 0.1
6 23
-31.5 56.5 11 0.8
-33 58 11 0.6
-34 60 11 0.6
-35 61 11 0.6
-36.5 61.5 11 0.6
-37.5 62.5 11 0.6
-39 65 11 0.6
-40.5 65.5 11 0.6
-42 67.5 11 0.6
-42.5 69 11.5 0.4
-45 70 12.5 0.4
-47.5 71.5 12.5 0.4
-49.5 72.5 12.5 0.1
-52 75 12.5 0.1
-53.5 78 14 0.1
-55 82 14.5 0.1
-55 84.5 15 0.1
-56 89 13 0.1
-55.5 92 12.5 0.1
-54.5 96 13.5 0.1
-55 98 13.5 0.1
-54.5 99 14 0.1
-54.5 99 14 0.1
2 5
-3.5 -1 1 1.5
-5.5 -3 10.5 1.5
-7.5 -4.5 10.5 1.5
-10 -5 10.5 1.8
-10.5 -5 12.5 1.8
3 7
-10.5 -5 12.5 1.8
-6 -9 13 0.1
-3 -11 13 0.1
-1 -13 12.5 0.1
2 -16 13 0.1
5 -19 12.5 0.1
3.5 -19 12.5 0.1
8 19
-10.5 -5 12.5 1.8
-12 -4 9.5 0.9
-14.5 -4.5 9 0.9
-15.5 -4 11.5 0.9
-18.5 -5.5 11.5 0.9
-20 -5 11.5 0.9
-22.5 -7 11.5 0.9
-24.5 -6 14 0.4
-27 -5.5 17 0.1
-31.5 -7.5 17.5 0.1
-35 -10 18.5 0.1
-40 -10 17 0.1
-44.5 -9.5 17 0.1
-46.5 -6.5 17 0.1
-50.5 -5 16.5 0.1
-54 -4 16.5 0.1
-57 -3 17 0.1
-60.5 -1 16.5 0.1
-64.5 1 24 0.1
CONNECTIONS:
0 1
0 1
2 1
2 1
4 1
5 1
5 1
7 1
7 1
4 1
10 1
10 1
0 1
1 1
1 1
0 1
4 1
5 1
5 1
7 1
7 1
4 1
10 1
11 1
11 1
10 1
14 1
15 1
15 1
14 1
0 1
0 1
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}