[fixed] morph.Vrest = -90.220509483 -90.220509483 -90.220509483 True h.v_init = -70.0432010302 -70.0432010302 -70.0432010302 True morph.kdmc_gbar = 0.000916263431341 0.000916263431341 0.000916263431341 True morph.cap = 0.700445928608 0.700445928608 0.7004459286080 True morph.spinecapfactor = 1.48057846279 1.48057846279 1.48057846279 True morph.rall = 137.494564931 137.494564931 137.494564931 TruePTcell morph.rm = 38457.4393085 38457.4393085 38457.4393085 True morph.h_gbar = 6.6129403774e-05 6.6129403774e-05 6.6129403774e-05 True [params] # each param is assignment string (comma-separated variable names), min, max, original, bounded morph.kdmc_gbar = 0.000725698962891 0.00114999553934 0.000916263431341 False morph.kBK_gpeak = 4.63449910469e-05 7.41871806763e-05 6e-05 False morph.cal_gcalbar = 3.9402995e-06 6.06015e-06 5e-06 False morph.can_gcanbar = 3.9601e-06 6.27546347488e-06 5e-06 False morph.kap_gbar = 0.04 0.0689923565988 0.05 False morph.kdr_gbar = 0.00494043336051 0.0086984469343 0.007 False morph.nax_gbar = 0.0116673995259 0.024 0.02 False morph.kBK_caVhminShift = 44.7725194146 54.1455684051 50.0 False morph.cadad_taur = 1.0 100.0 1.0 False morph.cadad_depth = 0.0864623739218 0.113341526033 0.1 False [run] #cellimport is the py file that has code for creating a cell cellimport = morph #cellfunc is function that returns a cell cellfunc = Cell # this cellfuncargs argument specifies morphology cellfuncargs = 'BS0284.ASC' #postassign called after params assigned to the global variables to set in cell postassign = cell.reconfig() #locations to record voltage from. first location recorded from is used in voltage optimization recordV = cell.soma[0](0.5) #recordSpike is location where spikes are recorded from #morph.py syntax recordSpike = cell.soma[0](0.5) usecvode = True tstop = 3000.0 baset = 1000.0 stimdel = 500.0 stimdur = 1000.0 [data] #experimental voltage traces - in entirety evolts = data/BS0284_tracedata_10KHz.npy # stimulus amplitudes lstimamp = data/BS0284_lstimamp.npy # sampling rate sampr = 10000