/*----------------------------------------------------------------
%W% %G%
ri22um.dat5 translated Fri Jun 30 15:31:34 1995 by ntscable 2.0
source file syntax: Nevin
output file syntax: CABLE
soma: diameter = 1.05263 um length = 0.1 um area = 0.330693 um2
2 three-D points numbered 1-2
1 primary neurites
69 branches totaling 7644.71 um in length, 35527.2 um2 in area
601 tree points translated to 1148 segments (1 requested)
Neurites divided into segments of equal dx between adjacent digitized
points.
Segment length constrained to be < 10 um, or < 10 times
mean diameter of translation interval, whichever is less.
/*
ri22um.dat5, Cell Ri22
This file differs from its predecessor, ri22um.dat4, in that
the diameters of points 4-12 have been multiplied by 0.77 to
make them have a circumference of an ellipse instead of a circle
ri22um.dat4, Cell Ri22
This file differs from its predecessor, ri22um.dat2, in that
segments points 130-436 (corresponding to dend[127-433] in the model)
have had 12 subtracted from the y coordinate. We did this because
comparing the model and the IR-DIC image suggested the model was
12 um to long. This effectively takes 12 um out of the primary
apical dendrite.
coordinates and diameters in Nevin format
pt type x y z diam
--------------
Nelson's notes
--------------
-the compartment called soma is really part of the axon that was
reconstructed
-an additional axon is added to this "soma" by ntscable, and therefore
serves as an extension of the axon
-the reconstructed axon also includes dend1[0] to dend1[1]
-the real soma is dend1[2] to dend1[9]
-dend1[7] is the middle of the soma
-dend1[134] is the dendritic recording site (at beginning - 0)
-changed axon diameter from 1e-4 to 1 um and length from 1e-4 to 100 um
-----------------------------------------------------------------------*/
printf("loading ri22geo5.hoc\n")
/* make geometry explicit */
primary_branches_cell = 1
branches_cell = 69
max_dx_cell = 10
points_cell = 601
nseg_cell = 1148
double sections_cell[1]
sections_cell[0] = 600
nsec_cell = 602
strdef name_soma, name_section, name_axon
name_soma = "soma"
name_section = "dend"
name_axon = "axon"
use_axon = 1 /* create sections */
create soma,\
axon,\
dend1[600]
/*----------------------------------------------------------------*/
proc geometry() { local i, j
/* soma geometry */
soma {
nseg = 1
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
/* axon geometry */
axon {
nseg = 1
pt3dclear()
pt3dadd(0,0,0,1)
pt3dadd(0,0,1,100)
}
/* connect axon */
soma connect axon (0), 0.5
/* connect primary neurites */
soma connect dend1[0] (0), 0.5
/* neurite geometry*/
for i = 0,599 {
dend1[i] {
nseg = fscan()
pt3dclear()
for j = 1, fscan() {
pt3dadd(fscan(),fscan(),fscan(),fscan())
}
}
}
/* branching topology*/
for i = 1,599 {
dend1[fscan()] connect dend1[i] (0), fscan()
}
}
geometry()
SOMA COORDINATES AND DIAMETERS:
2
-6.8 71.5 -0.2 1.0526
-6.8 71.5 -0.1 1.0526
NEURITE COORDINATES AND DIAMETERS:
1 2
-6.8 71.5 0 1.7105
-7.8 71.5 7 2.33
1 2
-7.8 71.5 7 2.33
-8.1 73.5 7 6.89
1 2
-8.1 73.5 7 6.89
-8.9 75.7 7 8.11
1 2
-8.9 75.7 7 8.11
-9.7 76.8 -0.7 2.73
1 2
-9.7 76.8 -0.7 2.73
-9.7 79.4 -0.7 12.36
1 2
-9.7 79.4 -0.7 12
-9.7 80.9 -0.7 14.18
1 2
-9.7 80.9 -0.7 14.18
-11.2 86.6 -0.7 15.2
1 2
-11.2 86.6 -0.7 15.2
-12.7 88.8 -3.1 14.17
1 2
-12.7 88.8 -3.1 14.17
-12.7 95.3 -3.1 10.64
2 2
-12.7 95.3 -3.1 10.64
-9.4 107 1.8 7.3694
3 2
-9.4 107 1.8 7.3694
-9.4 128.1 -1.9 5.7895
2 2
-9.4 128.1 -1.9 5.7895
-17 144.4 -5.1 5.2632
1 2
-17 144.4 -5.1 5.2632
-10.2 147.8 -5.1 1.9737
1 2
-10.2 147.8 -5.1 1.9737
-2.3 148.8 -2.1 2.1053
2 2
-2.3 148.8 -2.1 2.1053
13.5 154.7 0.6 1.579
2 2
13.5 154.7 0.6 1.579
27.3 159.2 3.2 1.4474
1 2
27.3 159.2 3.2 1.4474
34.1 157.6 3.2 1.4474
3 2
34.1 157.6 3.2 1.4474
53.6 162.7 10.8 1.3158
2 2
53.6 162.7 10.8 1.3158
70.6 170.9 15.1 1.4474
1 2
70.6 170.9 15.1 1.4474
75.2 179.3 16.6 1.7105
2 2
75.2 179.3 16.6 1.7105
92.4 186.6 23.1 1.1842
2 2
92.4 186.6 23.1 1.1842
103.6 194.7 29.7 1.3158
2 2
103.6 194.7 29.7 1.3158
107 208.3 38.8 1.3158
2 2
107 208.3 38.8 1.3158
119 210.1 38.1 0.65789
2 2
119 210.1 38.1 0.65789
129.6 209.9 37.7 0.39474
1 2
107 208.3 38.8 1.3158
109.3 211.3 42.1 0.65789
3 2
109.3 211.3 42.1 0.65789
111.4 222.2 51.4 0.26316
11 2
111.4 222.2 51.4 0.26316
103.9 257.1 66.7 0.26316
2 2
-2.3 148.8 -2.1 2.1053
6.8 156 -4.5 0.65789
1 2
6.8 156 -4.5 0.65789
11.1 162.8 -8.2 0.78947
1 2
11.1 162.8 -8.2 0.78947
17.5 166 -14.2 0.78947
1 2
17.5 166 -14.2 0.78947
18.9 171.5 -14.2 0.39474
2 2
18.9 171.5 -14.2 0.39474
20.7 182.7 -14.6 0.26316
2 2
17.5 166 -14.2 0.78947
11.4 163.3 -14.2 0.26316
1 2
11.4 163.3 -14.2 0.26316
9.4 161.1 -14.2 0.52632
1 2
-17 144.4 -5.1 5.2632
-19.1 151.1 -3 4.0789
1 2
-19.1 151.1 -3 4.0789
-20.3 156.3 -2.9 4.2105
2 2
-20.3 156.3 -2.9 4.2105
-22.4 172.5 -2.9 3.9474
1 2
-22.4 172.5 -2.9 3.9474
-20.2 182 -2.2 4.2105
2 2
-20.2 182 -2.2 4.2105
-31.3 187.7 -6.9 1.3158
2 2
-31.3 187.7 -6.9 1.3158
-45.8 190.8 -6.9 0.65789
1 2
-45.8 190.8 -6.9 0.65789
-52.1 186.6 -6.3 0.65789
2 2
-20.2 182 -2.2 4.2105
-21.4 182.7 9.4 4.6053
2 2
-21.4 182.7 9.4 4.6053
-28 195.1 17.4 1.3158
3 2
-28 195.1 17.4 1.3158
-5 194.2 32.8 1.3158
2 2
-28 195.1 17.4 1.3158
-28 207.4 26.3 1.3158
1 2
-21.4 182.7 9.4 4.6053
-21.4 187.3 11.1 4.6053
3 2
-21.4 187.3 11.1 4.6053
-41.3 188.6 5.6 0.65789
2 2
-41.3 188.6 5.6 0.65789
-54.8 182.8 5.6 0.65789
2 2
-21.4 187.3 11.1 4.6053
-17.4 203.8 10.4 4.7368
3 2
-17.4 203.8 10.4 4.7368
-41.7 220.3 14.6 1.8421
3 2
-41.7 220.3 14.6 1.8421
-59.8 236.8 19.9 2.1053
2 2
-59.8 236.8 19.9 2.1053
-71.8 237.6 22.2 1.7105
2 2
-71.8 237.6 22.2 1.7105
-87.5 244.1 31.8 1.7105
1 2
-87.5 244.1 31.8 1.7105
-89.4 240.5 37.4 1.7105
3 2
-89.4 240.5 37.4 1.7105
-100.8 260.7 42 1.3158
2 2
-100.8 260.7 42 1.3158
-112.5 260.4 40.9 1.3158
2 2
-112.5 260.4 40.9 1.3158
-123.8 269.5 47.9 1.3158
1 2
-123.8 269.5 47.9 1.3158
-132.6 267.3 48.4 0.65789
3 2
-17.4 203.8 10.4 4.7368
-17.4 227.3 0.6 4.4737
2 2
-17.4 227.3 0.6 4.4737
-1.2 230.2 -4.6 1.3158
1 2
-1.2 230.2 -4.6 1.3158
2.2 224.3 -4.6 1.3158
1 2
2.2 224.3 -4.6 1.3158
11.6 224.1 -4.6 1.3158
2 2
11.6 224.1 -4.6 1.3158
18.7 233 2.7 1.3158
2 2
18.7 233 2.7 1.3158
30.9 223.6 5.8 1.3158
1 2
30.9 223.6 5.8 1.3158
29.5 221.4 10.8 1.3158
5 2
29.5 221.4 10.8 1.3158
69.6 197.8 15.9 1.3158
1 2
69.6 197.8 15.9 1.3158
72.9 188.8 15.9 1.0526
2 2
72.9 188.8 15.9 1.0526
89 181.7 18 0.92105
1 2
89 181.7 18 0.92105
86.4 177.4 23.9 0.92105
1 2
86.4 177.4 23.9 0.92105
90.9 177.5 23.9 0.92105
1 2
90.9 177.5 23.9 0.92105
92.5 174.1 29.9 0.92105
1 2
92.5 174.1 29.9 0.92105
100.8 171.5 34.3 0.65789
2 2
100.8 171.5 34.3 0.65789
106.6 163.8 47.4 0.39474
1 2
18.7 233 2.7 1.3158
18.6 235.8 1.5 1.0526
3 2
18.6 235.8 1.5 1.0526
40.5 233.9 10.3 1.0526
2 2
40.5 233.9 10.3 1.0526
49.1 241.2 13.3 1.0526
3 2
49.1 241.2 13.3 1.0526
45.1 263.7 23.3 1.3158
2 2
45.1 263.7 23.3 1.3158
47.4 277 30.8 1.3158
4 2
18.6 235.8 1.5 1.0526
39.9 253.5 -5.5 0.52632
2 2
39.9 253.5 -5.5 0.52632
38.1 263.9 -5.6 0.26316
2 2
-17.4 227.3 0.6 4.4737
-26 243.2 -1.6 3.9474
3 2
-26 243.2 -1.6 3.9474
-48.4 259.1 7 1.3158
2 2
-48.4 259.1 7 1.3158
-55.8 265.7 2.6 1.579
2 2
-55.8 265.7 2.6 1.579
-71.1 264.7 7.6 1.0526
3 2
-71.1 264.7 7.6 1.0526
-93.4 272.7 15 1.3158
2 2
-93.4 272.7 15 1.3158
-106 275.9 17.9 1.3158
3 2
-106 275.9 17.9 1.3158
-127.1 279.8 23.3 1.1842
3 2
-127.1 279.8 23.3 1.1842
-140.3 293.5 37.6 1.3158
2 2
-140.3 293.5 37.6 1.3158
-151.5 308.7 38.3 1.3158
2 2
-151.5 308.7 38.3 1.3158
-164.6 319.9 38.9 1.3158
2 2
-164.6 319.9 38.9 1.3158
-183 323.2 32.2 0.78947
2 2
-55.8 265.7 2.6 1.579
-67.9 279.5 10.5 1.1842
2 2
-67.9 279.5 10.5 1.1842
-80.3 285.1 14.6 1.3158
2 2
-80.3 285.1 14.6 1.3158
-84.4 295.1 15.9 1.0526
2 2
-84.4 295.1 15.9 1.0526
-96.5 309.8 15.9 0.92105
2 2
-96.5 309.8 15.9 0.92105
-100.1 322.3 15.3 0.78947
1 2
-100.1 322.3 15.3 0.78947
-106.2 329.8 16.8 0.65789
2 2
-106.2 329.8 16.8 0.65789
-116.3 336.1 16.8 0.65789
1 2
-116.3 336.1 16.8 0.65789
-120.6 334.9 12.3 0.39474
3 2
-26 243.2 -1.6 3.9474
-26 259.5 10.5 4.0789
3 2
-26 259.5 10.5 4.0789
-9.3 272.4 20.9 2.1053
1 2
-9.3 272.4 20.9 2.1053
-5.5 271.9 27.4 2.3684
1 2
-5.5 271.9 27.4 2.3684
-1.1 268.3 35.3 2.3684
2 2
-5.5 271.9 27.4 2.3684
2.4 282.2 32.7 1.8421
2 2
2.4 282.2 32.7 1.8421
11.8 293.4 45.2 1.3158
3 2
11.8 293.4 45.2 1.3158
17.1 309.8 56.3 0.78947
3 2
-26 259.5 10.5 4.0789
-21.4 281.7 10.1 3.9474
2 2
-21.4 281.7 10.1 3.9474
-18.1 295.7 5.6 4.0789
1 2
-18.1 295.7 5.6 4.0789
-21 303.3 0 4.6053
3 2
-21 303.3 0 4.6053
-39.7 310.2 9.5 1.579
2 2
-39.7 310.2 9.5 1.579
-47.9 321.5 5.1 1.4474
2 2
-47.9 321.5 5.1 1.4474
-60.3 323.2 6.8 1.1842
1 2
-60.3 323.2 6.8 1.1842
-65.1 330.2 6.8 1.0526
3 2
-65.1 330.2 6.8 1.0526
-85 339.2 9.4 1.0526
2 2
-85 339.2 9.4 1.0526
-98.8 349.2 16.3 1.1842
4 2
-98.8 349.2 16.3 1.1842
-118.7 369.9 40.2 0.92105
2 2
-21 303.3 0 4.6053
-21 317.1 3.1 4.7368
2 2
-21 317.1 3.1 4.7368
-5.9 319.4 13.2 2.1053
2 2
-5.9 319.4 13.2 2.1053
-13.5 313.7 19.2 2.1053
2 2
-13.5 313.7 19.2 2.1053
-6.2 313.4 30.8 2.1053
2 2
-6.2 313.4 30.8 2.1053
-2.7 309.1 46.5 1.579
2 2
-2.7 309.1 46.5 1.579
-4.4 301.5 58.5 1.579
2 2
-4.4 301.5 58.5 1.579
0.2 295.8 67.3 1.579
3 2
-21 317.1 3.1 4.7368
-29.1 343.9 3.7 3.9474
3 2
-29.1 343.9 3.7 3.9474
-35.4 367 0.9 3.5526
3 2
-35.4 367 0.9 3.5526
-40.8 390.1 -1.6 3.8158
4 2
-40.8 390.1 -1.6 3.8158
-40.9 427.9 5.6 5
3 2
-40.9 427.9 5.6 5
-45.5 452.1 -1 4.6053
2 2
-45.5 452.1 -1 4.6053
-40.8 469.8 1.1 3.8158
3 2
-40.8 469.8 1.1 3.8158
-44.4 495.8 3.3 3.9474
3 2
-44.4 495.8 3.3 3.9474
-41.6 519.1 -1.1 3.9474
3 2
-41.6 519.1 -1.1 3.9474
-45.5 542.9 1 3.8158
2 2
-45.5 542.9 1 3.8158
-40.7 561.3 0.2 3.2895
2 2
-40.7 561.3 0.2 3.2895
-47.4 574.1 0.2 3.6842
2 2
-47.4 574.1 0.2 3.6842
-43.1 587.2 2.6 2.6316
4 2
-43.1 587.2 2.6 2.6316
-44.1 617.7 0 2.6316
3 2
-44.1 617.7 0 2.6316
-41.2 641.7 1.4 2.3684
2 2
-41.2 641.7 1.4 2.3684
-37.4 659.5 -1.6 2.1053
1 2
-37.4 659.5 -1.6 2.1053
-41.5 665.2 -1.6 2.1053
2 2
-41.5 665.2 -1.6 2.1053
-36.4 680.2 -2.9 2.3684
1 2
-36.4 680.2 -2.9 2.3684
-34.1 687.4 -0.3 2.1053
2 2
-34.1 687.4 -0.3 2.1053
-34 701.3 -2.9 2.1053
1 2
-34 701.3 -2.9 2.1053
-35.3 701.8 -2.9 2.2368
2 2
-35.3 701.8 -2.9 2.2368
-38.2 720.1 -0.8 2.1053
3 2
-38.2 720.1 -0.8 2.1053
-31.2 741.9 2.5 2.1053
2 2
-31.2 741.9 2.5 2.1053
-34.4 754.3 2.9 2.3684
1 2
-34.4 754.3 2.9 2.3684
-32.3 763 2.9 2.5
2 2
-32.3 763 2.9 2.5
-22.7 769.9 1.3 1.3158
2 2
-22.7 769.9 1.3 1.3158
-22.3 782.5 3.1 1.3158
1 2
-22.3 782.5 3.1 1.3158
-22.8 786.1 3.9 1.579
1 2
-22.8 786.1 3.9 1.579
-22.8 791.1 3.9 1.3158
2 2
-22.8 791.1 3.9 1.3158
-15.8 801.9 2.3 1.3158
2 2
-15.8 801.9 2.3 1.3158
-19.6 811.4 2.4 1.579
2 2
-19.6 811.4 2.4 1.579
-12.3 820.3 3.9 1.4474
1 2
-12.3 820.3 3.9 1.4474
-15.9 827.9 4.9 1.3158
1 2
-15.9 827.9 4.9 1.3158
-9.2 833.5 2.1 1.3158
1 2
-9.2 833.5 2.1 1.3158
-7.9 841.8 -0.7 1.3158
3 2
-7.9 841.8 -0.7 1.3158
2.5 865.9 -5.5 1.3158
1 2
2.5 865.9 -5.5 1.3158
4.2 875.4 -5.5 1.3158
2 2
4.2 875.4 -5.5 1.3158
11.2 884.8 -8.2 1.1842
2 2
11.2 884.8 -8.2 1.1842
6.4 900.1 -6.1 1.3158
1 2
6.4 900.1 -6.1 1.3158
13 905.5 -5.7 1.1842
1 2
13 905.5 -5.7 1.1842
8.4 911.5 -5.1 1.579
2 2
8.4 911.5 -5.1 1.579
19.5 918.6 -6.2 0.7895
1 2
19.5 918.6 -6.2 0.7895
17.5 925.7 -2.9 0.7895
2 2
17.5 925.7 -2.9 0.7895
13.5 933.8 -9.2 0.6579
1 2
13.5 933.8 -9.2 0.6579
13.4 941.9 -10.5 0.9211
1 2
13.4 941.9 -10.5 0.9211
20.3 944.1 -14.3 0.5263
2 2
20.3 944.1 -14.3 0.5263
15.3 949.6 -21.4 0.2632
2 2
15.3 949.6 -21.4 0.2632
12.8 962.6 -21.4 0.2632
1 2
12.8 962.6 -21.4 0.2632
15 963.8 -21.4 0.2632
1 2
8.4 911.5 -5.1 1.579
8.4 911.5 -5.11 0.7895
5 2
8.4 911.5 -5.11 0.7895
4.8 941.3 -6.6 0.6579
2 2
4.8 941.3 -6.6 0.6579
12.4 951.7 -4.4 0.7895
3 2
12.4 951.7 -4.4 0.7895
4.4 967.7 -4.7 0.7895
4 2
4.4 967.7 -4.7 0.7895
10.4 991.6 -8.8 0.9211
2 2
10.4 991.6 -8.8 0.9211
15 1003 -9.9 0.7895
1 2
15 1003 -9.9 0.7895
9.7 1006.2 -9.9 0.7895
4 2
9.7 1006.2 -9.9 0.7895
21 1029.8 -9.9 0.7895
2 2
21 1029.8 -9.9 0.7895
28.3 1032.6 -7.1 0.9211
1 2
28.3 1032.6 -7.1 0.9211
28.3 1040 -4.6 0.9211
1 2
28.3 1040 -4.6 0.9211
32.1 1043.4 -2.2 1.0526
2 2
32.1 1043.4 -2.2 1.0526
41.4 1054.7 -4 1.0526
2 2
41.4 1054.7 -4 1.0526
55.4 1061.2 -2.8 0.7895
3 2
55.4 1061.2 -2.8 0.7895
58.9 1080.5 0.4 0.7895
2 2
58.9 1080.5 0.4 0.7895
62 1088.3 8.3 0.7895
2 2
62 1088.3 8.3 0.7895
73 1096.6 9.6 0.6579
1 2
73 1096.6 9.6 0.6579
78.2 1100.6 13.9 0.2632
1 2
78.2 1100.6 13.9 0.2632
82.9 1102.4 16.8 0.2632
2 2
78.2 1100.6 13.9 0.2632
75.9 1102.3 11.3 0.2632
4 2
62 1088.3 8.3 0.7895
55 1092.1 26.7 0.3947
2 2
55 1092.1 26.7 0.3947
50.8 1094.6 31.7 0.3947
1 2
50.8 1094.6 31.7 0.3947
49.1 1098.2 30 0.2632
5 2
50.8 1094.6 31.7 0.3947
44.2 1104.5 38.3 0.2632
3 2
55 1092.1 26.7 0.3947
47.9 1092 27 0.2632
2 2
58.9 1080.5 0.4 0.7895
51.5 1082.9 6 0.3947
3 2
51.5 1082.9 6 0.3947
44.7 1090.1 11.7 0.6579
2 2
44.7 1090.1 11.7 0.6579
35.5 1089 16.2 0.6579
2 2
35.5 1089 16.2 0.6579
29.2 1093.9 14.3 0.6579
2 2
29.2 1093.9 14.3 0.6579
22.8 1093.4 10.8 0.3947
3 2
22.8 1093.4 10.8 0.3947
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31.3 35 21.4 1.3158
3 2
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49.4 21.4 19 1.3158
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68.3 9.4 19 1.3158
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CONNECTIONS:
0 1
1 1
2 1
3 1
4 1
5 1
6 1
7 1
8 1
9 1
10 1
11 1
12 1
13 1
14 1
15 1
16 1
17 1
18 1
19 1
20 1
21 1
22 1
23 1
22 1
25 1
26 1
13 1
28 1
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11 1
35 1
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55 1
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49 1
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63 1
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68 1
69 1
70 1
71 1
72 1
63 1
74 1
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74 1
79 1
59 1
81 1
82 1
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85 1
86 1
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88 1
89 1
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83 1
92 1
93 1
94 1
95 1
96 1
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98 1
81 1
100 1
101 1
102 1
102 1
104 1
105 1
100 1
107 1
108 1
109 1
110 1
111 1
112 1
113 1
114 1
115 1
109 1
117 1
118 1
119 1
120 1
121 1
122 1
117 1
124 1
125 1
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128 1
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135 1
136 1
137 1
138 1
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140 1
141 1
142 1
143 1
144 1
145 1
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148 1
149 1
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151 1
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156 1
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203 1
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209 1
147 1
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281 1
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286 1
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269 1
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290 1
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134 1
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294 1
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297 1
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300 1
301 1
302 1
303 1
304 1
305 1
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310 1
311 1
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331 1
332 1
333 1
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344 1
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372 1
373 1
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375 1
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384 1
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392 1
393 1
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395 1
396 1
397 1
398 1
399 1
399 1
401 1
384 1
403 1
404 1
405 1
406 1
407 1
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410 1
411 1
411 1
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414 1
415 1
416 1
417 1
418 1
404 1
420 1
421 1
422 1
423 1
424 1
425 1
426 1
427 1
424 1
429 1
430 1
431 1
432 1
7 1
434 1
435 1
436 1
437 1
435 1
439 1
440 1
441 1
442 1
443 1
444 1
445 1
446 1
447 1
448 1
449 1
450 1
451 1
5 1
453 1
454 1
455 1
456 1
457 1
458 1
459 1
460 1
461 1
462 1
463 1
464 1
465 1
466 1
467 1
463 1
469 1
470 1
456 1
472 1
473 1
474 1
475 1
476 1
477 1
478 1
479 1
480 1
481 1
482 1
483 1
484 1
485 1
486 1
487 1
455 1
489 1
490 1
491 1
492 1
493 1
494 1
490 1
496 1
497 1
498 1
499 1
500 1
501 1
502 1
503 1
504 1
500 1
506 1
3 1
508 1
509 1
510 1
509 1
512 1
513 1
514 1
2 1
516 1
517 1
518 1
519 1
520 1
521 1
522 1
523 1
524 1
517 1
526 1
527 1
528 1
529 1
530 1
531 1
532 1
516 1
534 1
535 1
536 1
537 1
538 1
539 1
540 1
541 1
1 1
543 1
544 1
545 1
546 1
547 1
546 1
549 1
550 1
551 1
552 1
553 1
554 1
555 1
556 1
557 1
558 1
559 1
560 1
561 1
562 1
563 1
564 1
0 1
566 1
567 1
568 1
569 1
570 1
571 1
572 1
573 1
572 1
575 1
568 1
577 1
578 1
579 1
580 1
581 1
582 1
583 1
584 1
585 1
586 1
587 1
582 1
589 1
590 1
591 1
592 1
593 1
594 1
595 1
596 1
597 1
598 1
proc correct() {
/* correct diameters of dendrites at origins of basals */
dend1[434] {diam=1.40}
dend1[436] {diam=1.00}
dend1[439] {diam=0.70}
dend1[453] {diam=2.24}
dend1[508] {diam=1.96}
dend1[516] {diam=1.40}
dend1[543] {diam=1.82}
dend1[566] {diam=0.84}
/* correct diameters of dendrites at origins of obliques */
dend1[12] {diam=1.97}
dend1[39] {diam=1.32}
dend1[43] {diam=1.32}
dend1[47] {diam=0.66}
dend1[50] {diam=1.84}
dend1[60] {diam=1.32}
dend1[82] {diam=1.32}
dend1[101] {diam=2.11}
dend1[110] {diam=1.58}
dend1[118] {diam=2.11}
/* increase number of segments for somatic compartments */
for i=1,9 {
dend1[i] {nseg=10}
}
}
correct()
/*----------------------------------------------------------------*/
proc geometry() {
/* NULL geometry procedure: keeps the user from
calling the geometry procedure in isolation. */
printf("\nYou must re-read the entire geometry\n")
printf("file to execute geometry().\n\n")
}