function generate_img_dynasim(directory,datatype_range)
cd(directory);
datadir = [directory, '*data.mat'];
datafiles = dir(datadir);
txtfile = strcat(directory,'.csv');
txtfile = strrep(txtfile,'/','-')
formatSpec = '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s \r\n';
fileID = fopen(txtfile,'at+');
tempID7 = fileID; %also kludgey
fprintf(fileID,formatSpec, ...
'Filename, Average firing rate, Spike pairs, Total power, Delta, Theta, Alpha, Beta, Low gamma, High gamma, HFO, Low freq peak, Beta peak, Low gamma peak, High gamma peak, HFO peak, Gamma peak, High peak, Checksum, \r\n');
for file = datafiles'
filename = strsplit(file.name,'.m');
filename = filename{1};
load(file.name);
for datatype = datatype_range
if datatype == 1
data = soma_V;
filenew = strcat(filename, '_FSI')
elseif datatype == 2
data = D1_V;
filenew = strcat(filename, '_D1')
elseif datatype == 3
data = D1_soma_somaMSNiSYN_s;
filenew = strcat(filename, '_FSID1syn')
elseif datatype == 4
data = D1_mCurrentMSN_m;
filenew = strcat(filename, '_D1mcurr')
elseif datatype == 5
data = D1_D1_gabaRecInputMSN_s;
filenew = strcat(filename, '_D1syn')
elseif datatype == 6
data = D2_V;
filenew = strcat(filename, '_D2')
elseif datatype == 7
data = D2_soma_somaMSNiSYN_s;
filenew = strcat(filename, '_FSID2syn')
elseif datatype == 8
data = D2_mCurrentMSN_m;
filenew = strcat(filename, '_D2mcurr')
elseif datatype == 9
data = D2_D2_gabaRecInputMSN_s;
filenew = strcat(filename, '_D2syn')
elseif datatype == 10
data = FSI_V;
filenew = strcat(filename, '_FSIsc')
end
T_total = size(data,1)-1;
T_start = T_total*0.25;
numcells = size(data,2);
%%%%%%%%image generation
time = zeros(1,size(data,1));
for j = 1:T_total + 1;
time(j) = (j-1)*10*simulator_options.dt; %factor of 10 for decimation reasons
end
V_short = data(T_start:T_total,:);
[avgfr,spike_pairs, spike_indicator] = generate_spikes(data, V_short, filenew, time, T_start, simulator_options.dt, numcells);
%theres a bug here i haVen't fixed due to laziness
%it should only be numcells in the line aboVe if data is soma_V.
%should change for d1s and d2s. whateVer
fileID = tempID7;
generate_spec(directory, avgfr, 0, 0, spike_pairs, V_short, filenew, time, simulator_options.dt, numcells, tempID7, formatSpec, simulator_options.modifications)
generate_spec(directory, avgfr, 0, 0, spike_pairs, sum(spike_indicator), strcat(filenew, '_spikes'), time, simulator_options.dt, 1, tempID7, formatSpec, simulator_options.modifications)
%%%%%%%%%%%%%%%%%%%%% gating Variables
handle4 = figure;
if datatype == 1
plot(time(T_start+2:end),spike_indicator(1,:),time(T_start+1:end),soma_somaGolombNa_h(T_start+1:end,1), ...
time(T_start+1:end),soma_somaGolombKdr_n(T_start+1:end,1), time(T_start+1:end),soma_somaGolombK_a(T_start+1:end,1), ...
time(T_start+1:end),soma_somaGolombK_b(T_start+1:end,1), time(T_start+1:end), soma_soma_somaSomaiSYN_s(T_start+1:end,1));
legend('Spikes','Sodium activation','Potassium activation','Potassium 2 activation', 'Potassium 2 inactivation','IPSC')
elseif datatype == 2
plot(time(T_start+2:end),spike_indicator(1,:),time(T_start+1:end),D1_naCurrentMSN_h(T_start+1:end,1), ...
time(T_start+1:end),D1_kCurrentMSN_m(T_start+1:end,1), time(T_start+1:end),D1_naCurrentMSN_m(T_start+1:end,1), ...
time(T_start+1:end),D1_mCurrentMSN_m(T_start+1:end,1), time(T_start+1:end), D1_soma_somaMSNiSYN_s(T_start+1:end,1), ...
time(T_start+1:end),D1_D1_gabaRecInputMSN_s(T_start+1:end,1));
legend('Spikes','Sodium activation','Potassium activation','Sodium inactivation', 'M current activation','FSI to D1 IPSC',...
'D1 to D1 IPSC')
elseif datatype == 4
plot(time(T_start+1:end),D1_mCurrentMSN_m(T_start+1:end,1))
legend('M current activation')
elseif datatype == 6
plot(time(T_start+2:end),spike_indicator(1,:),time(T_start+1:end),D2_naCurrentMSN_h(T_start+1:end,1), ...
time(T_start+1:end),D2_kCurrentMSN_m(T_start+1:end,1), time(T_start+1:end),D2_naCurrentMSN_m(T_start+1:end,1), ...
time(T_start+1:end),D2_mCurrentMSN_m(T_start+1:end,1),... %time(T_start+1:end), D2_soma_somaMSNiSYN_s(T_start+1:end,1), ...
time(T_start+1:end),D2_D2_gabaRecInputMSN_s(T_start+1:end,1));
legend('Spikes','Sodium activation','Potassium activation','Sodium inactivation', 'M current activation',...%'FSI to D2 IPSC',...
'D2 to D2 IPSC')
elseif datatype == 8
plot(time(T_start+1:end),D2_mCurrentMSN_m(T_start+1:end,1))
legend('M current activation')
end
xlabel('Time');
imgtitle = strcat(filenew,'ions.png')
title(imgtitle);
saveas(handle4, imgtitle, 'png');
xlim([T_start T_start+2000]);
imgtitle = strcat(filenew,'ions_zoom.png')
title(imgtitle);
saveas(handle4, imgtitle, 'png');
%saVe(filename)
close all
end
close all
end
fclose('all');
end