TITLE Kdrslow.mod
COMMENT
Slow delayed rectifier K+ currents: Storm, 1990:
(3) IK activates slowly (time constant, 20–60 ms) in response to depolarizations positive to -40 mV and inactivates (about 5s) at -80 to -40 mV; it probably participates in spike repolarization.
(4) IM activates slowly (about 50 ms) positive to -60 mV and does not inactivate; it tends to attenuate excitatory inputs, it reduces the firing rate during maintained depolarization (adaptation) and contributes to the medium after-hyperpolarization (mAHP).
Aradi shifted the voltage dependence by -12 mV - don't know why
Note: there is some type of warning during compilation of this mechanism:
ichan2.c: In function 'initmodel':
ichan2.c:488: warning: 'return' with a value, in function returning void
Probably due to the VERBATIM blocks setting it to return 0. I have removed them.
Not sure what their purpose was.
ENDCOMMENT
VERBATIM
#include <stdlib.h> /* Include this library so that the following
(innocuous) warning does not appear:
In function '_thread_cleanup':
warning: incompatible implicit declaration of
built-in function 'free' */
ENDVERBATIM
UNITS {
(mA) =(milliamp)
(mV) =(millivolt)
(uF) = (microfarad)
(molar) = (1/liter)
(nA) = (nanoamp)
(mM) = (millimolar)
(um) = (micron)
FARADAY = 96520 (coul)
R = 8.3134 (joule/degC)
}
NEURON {
SUFFIX ch_Kdrslow
USEION k READ ek WRITE ik VALENCE 1
RANGE g, gmax, ninf, ntau, ik
RANGE myi
THREADSAFE
}
PARAMETER {
v (mV)
celsius (degC) : temperature - set in hoc; default is 6.3
dt (ms)
ek (mV)
gmax (mho/cm2)
}
STATE {
n
}
ASSIGNED {
g (mho/cm2)
ik (mA/cm2)
ninf
ntau (ms)
nexp
myi (mA/cm2)
}
BREAKPOINT {
SOLVE states
g = gmax*n*n*n*n
ik = g*(v-ek)
myi = ik
}
UNITSOFF
INITIAL {
trates(v)
n = ninf
}
PROCEDURE states() { :Computes state variables m, h, and n
trates(v) : at the current v and dt.
n = n + nexp*(ninf-n)
}
LOCAL q10
PROCEDURE rates(v) { :Computes rate and other constants at current v.
:Call once from HOC to initialize inf at resting v.
LOCAL alpha, beta, sum
q10 = 3^((celsius - 34)/10)
:q10 = 3^((celsius - 6.3)/10)
:"ns" sKDR activation system
alpha = -0.028*vtrap((v+65-35),-6)
beta = 0.1056/exp((v+65-10)/40)
sum = alpha+beta
ntau = 1/sum
ninf = alpha/sum
}
PROCEDURE trates(v) { :Computes rate and other constants at current v.
:Call once from HOC to initialize inf at resting v.
LOCAL tinc
TABLE ninf, nexp, ntau
DEPEND dt, celsius
FROM -100 TO 100 WITH 200
rates(v) : not consistently executed from here if usetable_hh == 1
: so don't expect the tau values to be tracking along with
: the inf values in hoc
tinc = -dt * q10
nexp = 1 - exp(tinc/ntau)
}
FUNCTION vtrap(x,y) { :Traps for 0 in denominator of rate eqns.
if (fabs(x/y) < 1e-6) {
vtrap = y*(1 - x/y/2)
}else{
vtrap = x/(exp(x/y) - 1)
}
}
UNITSON