### WARNING: this script launches a process for each combination
### of parameters specified, so either run on a multicore machine
### or run a single case at a time
from brian import *
import network_simulation
import os
import datetime
import common
import numpy
import collections
import multiprocessing
script_pars = {
'log': True,
'remote': os.environ['USER']=='s1144270',
'get_NOtarget_ext_rate': False
}
now = datetime.datetime.now()
if script_pars['log']:
script_pars['logdir'] = '../simulation-results/fig-1/'
os.system('mkdir ../simulation-results')
os.system('mkdir ../simulation-results/fig-1')
simulation_pars = {
'n_cells': 5000,
'input_group_pop': 100,
'sim_step': 1000 *ms,
'sampletime': 50000 *ms,
'NOsettletime': 300000 *ms,
'NOthresh_scaling': 1.0,
'autothresh_time': 200000 *ms,
'settletime': 500 *ms,
'maxthresh_NO_auto': True,
'scale_to_mean': True,
'scale_to_rate': False,
'Nsample_rate_scale': 20,
'sample_neurons_N': 0,
'record_pop_rate': False,
'mod_targetNOconc': True,
'init_homogenous_inputs': False,
'single_group': True ,
'main_group_input_type': 'uniform',
'num_input_groups': 0,
'interactive_plotting': False,
'log': False,
'input_rates' : [10*Hz,5*Hz],
'ext_rate': 20.0 * Hz,
'ext_mean': 25.0,
'ext_std': 5.0,
'g_ext': 80.0 * nS, ## originally 80.0 * nS
'g_exc': 4.0 * nS,
'g_inh': 64.0 * nS,
'C': 100,
# 'epsilon': 0.02,
'NO_diff': 0.1,
'NOdecay_rate': 10.0,
'local_NOdecay_factor': 5.0,
'ds': 0.0020,
'maxthresh_NO': 4.0e-6,
'Vt_min': -58.0 *mV,
'Vt_max': -40.0 *mV,
'bounded_Vt': True,
's_lat': 0.1,
'weight_dist': 'uniform',
'centre_group_and_ring': False,
'savefig_id': False,
'logdir': script_pars['logdir'],
'diffusing': True,
'mod_tau': 2500,
'modulating': True,
'nNOS_inhibitory_only': False,
'nNOS_ampa_activated': False,
'global_NOreadout': False,
'restore_inputs': False,
'reconfigure_inputs': False,
'ind_ext_input': False,
'tau_OU': 1*ms,
'sigma_OU': 1*mV,
'nu_ext': 2*mV,
'size': 1.0,
'use_C_over_epsilon': True,
'variable_targets': False,
'target_variance': 0.0,
'var_targets_premod_std': 5.0
}
NO_target_pars = {
'maxthresh_NO_auto': True,
'sampletime': 2000 * ms,
'NOsettletime': 10000 *ms
}
comb_pars = []
from default_params import rate_distribution_params
simulation_pars.update(rate_distribution_params)
simulation_pars['g_exc'] = 5.5*nS
simulation_pars['savefig_id'] = False
simulation_pars['do_discrim_task'] = False
simulation_pars['get_pattern_responses'] = False
simulation_pars['reconfigure_inputs'] = False
simulation_pars['subgroup_presentations_during_homeostasis'] = False
#simulation_pars['weight_dist'] = 'spatial_s_lat'
#simulation_pars['s_lat'] = 0.1
from default_params import comb_pars_reconf_exp
comb_pars = comb_pars_reconf_exp
simulation_pars['dump_each_simstep'] = False
simulation_pars['N_simstep_dump'] = 100
# paper parameters
simulation_pars['NO_diff'] = 1.0e-6 # diffusion constant for NO # mm^2/ms = 3300 micron^2/s
simulation_pars['NOdecay_rate'] = 1.0e-4
sweep_pars = {
'trial_ID': [0]
}
if script_pars['log']:
common.save_pickle_safe(script_pars['logdir']+'simulations_pars.pickle',
{'simulation_pars':simulation_pars,'comb_pars':comb_pars,'sweep_pars':sweep_pars})
results = []
def run_iter(iter_pars):
print iter_pars
logfile = iter_pars['logdir']+"{0}{1}.pickle".format('results',iter_pars['sim_id'])
iter_pars['logfile']=logfile
results.append(network_simulation.main(iter_pars))
if script_pars['log']:
common.save_pickle_safe(iter_pars['logdir']+"{0}{1}.pickle".format('results',iter_pars['sim_id']),results[-1])
iter_pass = []
simulation_pars_orig = simulation_pars.copy()
for combo in comb_pars:
simulation_pars = simulation_pars_orig.copy()
simulation_pars.update(combo)
for parkey in sweep_pars.keys():
if isinstance(sweep_pars[parkey],collections.Iterable):
for parval in sweep_pars[parkey]:
simulation_pars.update({parkey:parval})
simulation_pars['sim_id'] = common.create_info_string(combo) + common.create_info_string(dict(filter(lambda i:i[0] in sweep_pars, simulation_pars.iteritems())))
iter_pass.append(simulation_pars)
multiprocessing.Process(target=run_iter,args=[simulation_pars]).start()
## comment out above line, and use below line for single core process
#run_iter(simulation_pars)