// Created 07/30/03 12:03:30 by /usr/site/scripts/loadfiles
//================================================================
// INSERTED batch.hoc
// $Id: batch.hoc,v 1.3 2003/07/30 15:42:15 billl Exp $
// when running loadfiles on this, need to edit nrnoc.hoc to remove
// conditional: if (xwindows) ... else ...
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/setup.hoc
// $Id: setup.hoc,v 1.17 2003/07/23 17:44:26 billl Exp $
// variables normally controlled by SIMCTRL
// load_file("setup.hoc")
show_panel=0
proc setup () {}
strdef simname, filename, output_file, datestr, uname, comment, section, osname
objref tmpfile,nil,graphItem
tmpfile = new File()
simname = "sim" // helpful if running multiple simulations simultaneously
runnum = 2 // updated at end of run
datestr = "99aug01" // updated at end of day
output_file = "data/99aug01.01" // assumes a subdir called data
comment = "current comment for saving sim"
uname = "i686" // keep track of type of machine for byte compatibility
osname = "Linux" // will want to grab this from env
printStep = 0.25 // time interval for saving to vector
graph_flag=1
xwindows = 1 // can still save but not look without xwindows
// load_file("nrnoc.hoc")
// END /usr/site/nrniv/local/hoc/setup.hoc
//================================================================
//================================================================
// INSERTED /usr/site/nrniv/simctrl/hoc/nrnoc.hoc
// $Id: nrnoc.hoc,v 1.54 2003/07/23 14:01:38 billl Exp $
proc nrnoc () {}
// Users should not edit nrnoc.hoc or default.hoc. Any local
// changes to these files should be made in local.hoc.
// key '*&*' is picked up by to indicate command for emacs
proc elisp () { printf("*&* %s\n",$s1) }
// if (not exists(simname)) { strdef simname, output_file, datestr, comment }
// Simctrl.hoc will automatically load stdgraph.hoc which automatically
// loads stdrun.hoc
strdef temp_string_, user_string_ // needed for simctrl
/* Global variable default values. NOTE that stdrun.hoc, stdgraph.hoc
and simctrl.hoc all contain variable definitions and thus default.hoc
should be loaded after these files */
//================================================================
// INSERTED /usr/site/nrniv/simctrl/hoc/default.hoc
// $Id: default.hoc,v 1.5 2003/07/08 16:16:52 billl Exp $
/* This file contains various global defaults for hoc
** Users should not edit nrnoc.hoc or default.hoc. Any local
changes to these files should be made in local.hoc.
----------------------------------------------------------------*/
/*------------------------------------------------------------
Object defaults
------------------------------------------------------------*/
/*** Define a "nil" object ***/
objectvar nil
/*------------------------------------------------------------
String defaults
------------------------------------------------------------*/
/*** "Section" is used if errors are found in the initializiations ***/
strdef section
/*** Misc defines used by graphic routines ***/
temp_string_ = "t"
tempvar = 0
/*------------------------------------------------------------
Simulation defaults
------------------------------------------------------------*/
/* To be consistent w/the nmodl values */
FARADAY = 96520. /* Hoc default = 96484.56 */
PI = 3.14159 /* Hoc default = 3.1415927 */
/* 0=off, 1=on */
print_flag = 0 /* Write to output file */
graph_flag = 1 /* Plot output */
iv_flag = 1 /* Using Interviews plotting */
batch_flag = 0 /* Using batch_run() */
compress_flag = 0 /* Compress output file when saved */
stoprun = 0 /* 0=running, 1=stopped */
iv_loaded = 0 /* Load initial iv stuff on once */
init_seed = 830529
run_seed = 680612
t = 0 /* msec */
dt = .01 /* msec */
tstop = 100 /* msec */
printStep = 0.1 /* msec */
plotStep = 0.1 /* msec */
flushStep = 0.1 /* msec */
eventStep = 50 /* Number of nstep's before a doEvent */
secondorder = 0
celsius = 6.3 /* degC */
v_init = -70 /* (mV) */
global_ra = 200 /* (ohm-cm) specific axial resisitivity */
/*** Ion parameters ***/
ca_init = 50e-6 /* mM */
na_init = 10 /* mM */
k_init = 54.4 /* mM */
// END /usr/site/nrniv/simctrl/hoc/default.hoc
//================================================================
/* Allows arrays of strings */
objref hoc_obj_[2]
load_file("stdgui.hoc")
//================================================================
// INSERTED /usr/site/nrniv/simctrl/hoc/simctrl.hoc
// $Id: simctrl.hoc,v 1.14 2000/11/27 21:59:33 billl Exp $
// Graphic routines for neuremacs simulation control
proc sim_panel () {
xpanel(simname)
xvarlabel(output_file)
xbutton("Init", "stdinit()")
xbutton("Init & Run", "run()")
xbutton("Stop", "stoprun=1")
xbutton("Continue till Tstop", "continueRun(tstop)")
xvalue("Continue till", "runStopAt", 1, "{continueRun(runStopAt) stoprun=1}", 1, 1)
xvalue("Continue for", "runStopIn", 1, "{continueRun(t + runStopIn) stoprun=1}", 1,1)
xbutton("Single Step", "steprun()")
xvalue("Tstop", "tstop", 1, "tstop_changed()", 0, 1)
graphmenu()
sim_menu_bar()
misc_menu_bar()
xpanel()
}
proc misc_menu_bar() {
xmenu("Miscellaneous")
xbutton("Label Graphs", "labelgrs()")
xbutton("Label With String", "labelwith()")
xbutton("Label Panel", "labelpanel()")
xbutton("Parameterized Function", "load_template(\"FunctionFitter\") makefitter()")
xmenu()
}
proc sim_menu_bar() {
xmenu("Simulation Control")
xbutton("File Vers", "elisp(\"sim-current-files\")")
xbutton("File Status...", "elisp(\"sim-rcs-status\")")
xbutton("Sim Status", "elisp(\"sim-portrait\")")
xbutton("Load Current Files", "elisp(\"sim-load-sim\")")
xbutton("Load Templates", "elisp(\"sim-load-templates\")")
xbutton("Load File...", "elisp(\"sim-load-file\")")
xbutton("Save Sim...", "elisp(\"sim-save-sim\")")
xbutton("Set File Vers...", "elisp(\"sim-set-file-ver\")")
xbutton("Read Current Vers From Index", "elisp(\"sim-read-index-file\")")
xbutton("Read Last Saved Vers", "elisp(\"sim-read-recent-versions\")")
xbutton("Output to sim buffer", "elisp(\"sim-direct-output\")")
xmenu()
}
proc labelpanel() {
xpanel(simname,1)
xvarlabel(output_file)
xpanel()
}
proc labels () {
labelwith($s1)
labelgrs()
}
proc labelgrs () { local i, j, cnt
for j=0,n_graph_lists-1 {
cnt = graphList[j].count() - 1
for i=0,cnt labelgr(graphList[j].object(i))
}
}
proc labelwith () { local i, j, cnt
temp_string_ = user_string_ // save the old one
if (numarg() == 1) { /* interactive mode */
user_string_ = $s1
} else {
string_dialog("write what?", user_string_)
}
for j=0,n_graph_lists-1 {
cnt = graphList[j].count() - 1
for i=0,cnt {
graphList[j].object(i).color(0)
graphList[j].object(i).label(0.5,0.9,temp_string_)
graphList[j].object(i).color(1)
graphList[j].object(i).label(0.5,0.9,user_string_)
}
}
}
proc labelgr () { local i
$o1.color(0) // white overwrite
for (i=0;i<10;i=i+1) { // erase every possible runnum for this date
sprint(temp_string_,"%s %d%d",datestr,i,i)
$o1.label(0.1,0.7,temp_string_) }
$o1.color(1) // back to basic black
sprint(temp_string_,"%s %02d",datestr,runnum)
$o1.label(0.1,0.7,temp_string_)
}
// END /usr/site/nrniv/simctrl/hoc/simctrl.hoc
//================================================================
proc run () {
stdinit()
if (batch_flag == 1) {
cvode.solve(tstop)
} else {
continueRun(tstop)
}
finish()
}
proc continueRun () { local eventCount
eventCount=0
eventslow=1
stoprun = 0
if (using_cvode_) cvode.event($1)
while (t < tstop && stoprun == 0) {
advance()
outputData()
if (graph_flag) { fastflushPlot() doEvents() }
}
}
proc advance () { fadvance() }
proc stdinit() {
realtime=0 startsw()
t = 0
stoprun = 0
if (batch_flag == 1) {
}
init()
if (graph_flag == 1) {
if (iv_flag == 1) {
initPlot()
} else {
initGraph()
}
}
if (print_flag == 1) { initPrint() }
}
proc init () {
initMech()
initMisc1()
// Initialize state vars then calculate currents
// If user hand-set v in initMisc1() then v_init should be > 1000,
// else all compartments will be set to v_init
if (v_init < 1000) {
finitialize(v_init)
} else {
finitialize()
}
fcurrent()
// Set ca pump and leak channel for steady state
setMemb()
// Recalculate currents with new pump and leak kinetics
fcurrent()
fcurrent()
initMisc2()
if (cvode_active()) cvode.re_init()
}
// Initialization of mechanism variables
// NOTE: if any changes are made to the NEURON block of any local mod
// file, the user must add the necessary inits to initMisc1()
proc initMech () {
forall {
if ((!ismembrane("pas")) && (!ismembrane("Passive"))) {
// Allow for either pas or Passive mod file usage
// errorMsg("passive not inserted")
}
if (ismembrane("na_ion")) {
nai = na_init
nai0_na_ion = na_init
}
if (ismembrane("k_ion")) {
ki = k_init
ki0_k_ion = k_init
}
if (ismembrane("ca_ion")) {
cai = ca_init
cai0_ca_ion = ca_init
}
}
}
//* setMemb complex -- multiple names for passive mech
//** declarations
iterator scase() { local i
for i = 1, numarg() { temp_string_ = $si iterator_statement }}
objref paslist,pasvars[3],XO
double pasvals[2],x[1]
paslist = new List()
for ii=0,2 pasvars[ii]= new String()
for scase("pas","Pass","Passive") paslist.append(new String(temp_string_))
//** retval()
func retval () {
sprint(temp_string_,"x=%s",$s1)
execute(temp_string_)
return x
}
//** retval(),setval() -- return/set the hoc value of a string
func retval () {
sprint(temp_string_,"x=%s",$s1)
execute(temp_string_)
return x
}
proc setval () {
sprint(temp_string_,"%s=%g",$s1,$2)
execute(temp_string_)
}
//** findpas()
// assumes that we are starting in a live section since looks for pass mech there
qx_=0
proc findpas () {
for ii=0,paslist.count-1 {
XO=paslist.object(ii)
if (ismembrane(XO.s)) {
// print XO.s,"found"
pasvars[2].s=XO.s
sprint(pasvars[0].s,"g_%s(qx_)",XO.s)
for scase("e","erev","XXXX") { // look for the proper prefix
sprint(temp_string_,"%s_%s",temp_string_,XO.s)
if (name_declared(temp_string_)==1) break
}
if (name_declared(temp_string_)==0) { // not found
printf("SetMemb() in nrnoc.hoc: Can't find proper 'erev' prefix for %s\n",XO.s)
} else {
sprint(pasvars[1].s,"%s(qx_)",temp_string_)
}
}
}
}
proc setMemb () {
findpas() // assume that passive name is the same in all sections
forall for (qx_) { // will eventually want 'for (x)' to handle all the segments
if (ismembrane(pasvars[2].s)) {
for ii=0,1 pasvals[ii]=retval(pasvars[ii].s)
setmemb2()
for ii=0,1 setval(pasvars[ii].s,pasvals[ii])
}
}
}
func setother () {return 0} // callback stub
proc setmemb2 () { local iSum, ii, epas, gpas
gpas=pasvals[0] epas=pasvals[1]
// Setup steady state voltage using leak channel
iSum = 0.0
if (ismembrane("na_ion")) { iSum += ina(qx_) }
if (ismembrane("k_ion")) { iSum += ik(qx_) }
if (ismembrane("ca_ion")) { iSum += ica(qx_) }
iSum += setother()
// print iSum
if (iSum == 0) { // Passive cmp so set e_pas = v
epas = v
} else {
if (gpas > 0) { // Assume g set by user, calc e
epas = v + iSum/gpas
} else { // Assume e set by user, calc g
if (epas != v) {
gpas = iSum/(epas - v)
} else { gpas=0 }
}
if (gpas < 0) errorMsg("bad g", gpas)
if (epas < -100 || epas > 0) {
printf(".")
// printf("%s erev: %g %g %g\n",secname(),e_pas,ina,ik)
}
}
pasvals[0]=gpas pasvals[1]=epas
}
proc finish() {
/* Called following completion of continueRun() */
finishMisc()
if (graph_flag == 1) {
if (iv_flag == 1) {
flushPlot()
doEvents()
} else {
graphmode(-1)
plt(-1)
}
}
if (print_flag == 1) {
wopen("")
}
}
/*------------------------------------------------------------
User definable GRAPHICS and PRINTING routines
------------------------------------------------------------*/
proc outputData() {
// Default procedure - if outputData() doesn't exist in the run file
if (graph_flag == 1) {
if (iv_flag == 1) {
Plot()
rt = stopsw()
if (rt > realtime) {
realtime = rt
fastflushPlot()
doNotify()
if (realtime == 2 && eventcount > 50) {
eventslow = int(eventcount/50) + 1
}
eventcount = 0
}else{
eventcount = eventcount + 1
if ((eventcount%eventslow) == 0) {
doEvents()
}
}
} else {
graph(t)
}
}
if (print_flag == 1) {
if (t%printStep <= printStep) { printOut() }
}
}
proc printOut() {
/* Default procedure - if printOut() doesn't exist in the run file */
}
proc initGraph() {
/* Default procedure - if initGraph() doesn't exist in the run file */
graph()
}
proc initPrint() {
/* Default procedure - if initPrint() doesn't exist in the run file */
wopen(output_file)
}
/*------------------------------------------------------------
User definable BATCH RUN routines
------------------------------------------------------------*/
proc nextrun() {
// Called from finishmisc() following completion of batch in an autorun
wopen("")
runnum = runnum + 1
sprint(output_file,"data/b%s.%02d", datestr, runnum)
}
// commands for emacs
proc update_runnum() {
runnum = $1
sprint(output_file,"data/%s.%02d", datestr, runnum)
print "^&^ (progn (sim-index-revert)(setq sim-runnum ",runnum,"))" }
proc nrn_write_index() { printf("&INDEX& %s\n",$s1) }
proc nrn_update () { elisp("nrn-update") }
proc nrn_message () { printf("!&! %s\n",$s1) }
/*------------------------------------------------------------
User definable INITIALIZATION and FINISH routines
------------------------------------------------------------*/
// Default procedure - if initMisc1() doesn't exist in the run file
// Initializations performed prior to finitialize()
// This should contain point process inits and inits for any changes
// made to the NEURON block of any local mod file
proc initMisc1() { }
// Default procedure - if initMisc2() doesn't exist in the run file
// Initializations performed after finitialize()
proc initMisc2() { }
// Default procedure - if finishMisc() doesn't exist in the run file
proc finishMisc() { }
/*------------------------------------------------------------
Miscellaneous routines
------------------------------------------------------------*/
proc errorMsg() {
/* Print warning, assumes arg1 is string and arg2 if present is a
variable value */
sectionname(section)
if (numarg() == 0) {
printf("ERROR in errorMsg(): Needs at least 1 argument.\n")
} else if (numarg() == 1) {
printf("ERROR: %s in section %s.\n", $s1, section)
} else {
printf("ERROR: %s in section %s (var=%g).\n", $s1, section, $2)
}
}
proc clear() {
/* Clear non-interviews plot window */
plt(-3)
}
func mod() { local x, y
/* Mod function for non-integers */
x=$1
y=$2
return (x/y - int(x/y))
}
proc whatSection() { print secname() }
proc print_pp_location() { local x //arg1 must be a point process
x = $o1.get_loc()
sectionname(temp_string_)
printf("%s located at %s(%g)\n", $o1, temp_string_, x)
pop_section()
}
//* Load local modifications to nrnoc.hoc and default.hoc
//================================================================
// INSERTED /usr/site/nrniv/simctrl/hoc/local.hoc
// $Header: /usr/site/nrniv/simctrl/hoc/RCS/local.hoc,v 1.15 2003/02/13 15:32:06 billl Exp $
//
// This file contains local modifications to nrnoc.hoc and default.hoc
//
// Users should not edit nrnoc.hoc or default.hoc. Any local
// changes to these files should be made in this file.
// ------------------------------------------------------------
//* MODIFICATIONS TO NRNOC.HOC
// The procedures declared here will overwrite any duplicate
// procedures in nrnoc.hoc.
// ------------------------------------------------------------
//*MODIFICATIONS TO DEFAULT.HOC
//
// Vars added here may not be handled properly within nrnoc.hoc
//------------------------------------------------------------
//** String defaults
//** Simulation defaults
long_dt = .001 // msec
objref sfunc,tmpfile
sfunc = hoc_sf_ // needed to use is_name()
tmpfile = new File() // check for existence before opening a user's local.hoc file
proc write_comment () {
tmpfile.aopen("index")
tmpfile.printf("%s\n",$s1)
tmpfile.close()
}
func asin () { return atan($1/sqrt(1-$1*$1)) }
func acos () { return atan(sqrt(1-$1*$1)/$1) }
objref mt[2]
mt = new MechanismType(0)
proc uninsert_all () { local ii
forall for ii=0,mt.count()-1 {
mt.select(ii)
mt.selected(temp_string_)
if (strcmp(temp_string_,"morphology")==0) continue
if (strcmp(temp_string_,"capacitance")==0) continue
if (strcmp(temp_string_,"extracellular")==0) continue
if (sfunc.substr(temp_string_,"_ion")!=-1) continue
mt.remove()
// print ii,temp_string_
}
}
condor_run = 0 // define for compatability
// END /usr/site/nrniv/simctrl/hoc/local.hoc
//================================================================
if (xwindows && graph_flag) { nrnmainmenu() } // pwman_place(50,50)
print "Init complete.\n"
// END /usr/site/nrniv/simctrl/hoc/nrnoc.hoc
//================================================================
//================================================================
// INSERTED init.hoc
// $Id: init.hoc,v 1.4 2003/07/29 20:22:37 billl Exp $
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/grvec.hoc
// $Id: grvec.hoc,v 1.303 2003/07/29 20:41:22 billl Exp $
// main panel is 'vecpanel()'
proc grvec () {}
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/declist.hoc
// $Id: declist.hoc,v 1.43 2003/06/15 20:37:09 billl Exp $
proc declist() {}
//* Declarations
begintemplate String2
public s,t
strdef s,t
proc init() {
if (numarg() == 1) { s=$s1 }
if (numarg() == 2) { s=$s1 t=$s2 }
}
endtemplate String2
begintemplate SNO
public s,t,u,n,o,set
public ov,ol,set,get,pr,init
strdef s,t,u,tstr
objref o[3],this
double n[3]
proc init() {
if (numarg() >= 2) {s=$s1 n[0]=$2}
if (numarg() >= 4) {t=$s3 n[1]=$4}
if (numarg() == 6) {u=$s5 n[2]=$6}
}
proc ov () { local a,sz
if (numarg()>=1) a=$1 else a=0
if (numarg()==1) sz=$2 else sz=100
o[a]=new Vector(sz)
}
proc ol () {
if (numarg()==1) a=$1 else a=0
o[a]=new List()
}
proc set () { local ii
if (numarg()==1) ii=$1 else ii=0
if (ii==0) tstr=s else if (ii==1) tstr=t else if (ii==2) tstr=u else {
printf("ERROR: only 3 items in SNO: %s\n",this) return }
sprint(tstr,"%s = %s.n[%d]",tstr,this,ii)
execute(tstr)
}
proc get () { local ii
if (numarg()==1) ii=$1 else ii=0
if (ii==0) {
sprint(tstr,"%s.n[%d] = %s",this,ii,this.s)
} else if (ii==1) {
sprint(tstr,"%s.n[%d] = %s",this,ii,this.t)
} else if (ii==2) {
sprint(tstr,"%s.n[%d] = %s",this,ii,this.u)
} else { printf("ERROR: only 3 items in SNO: %s\n",this) return }
execute(tstr)
}
proc pr () { local ii
if (numarg()==1) ii=$1 else ii=0
if (ii==0) {
sprint(tstr,"print %s.s,\" \",%s,\" \",%s.n[%d]",this,s,this,ii)
} else if (ii==1) {
sprint(tstr,"print %s.t,\" \",%s,\" \",%s.n[%d]",this,t,this,ii)
} else if (ii==2) {
sprint(tstr,"print %s.u,\" \",%s,\" \",%s.n[%d]",this,u,this,ii)
} else { printf("ERROR: only 3 items in SNO: %s\n",this) return }
execute(tstr)
}
endtemplate SNO
strdef mchnms
objref tmplist,tmplist2,tmpobj,stack,SO
tmplist = new List()
stack = new List()
//* list iterator ltr
// usage 'for ltr(tmplist) { print XO }' :: 1 arg, assumes XO as dummy
// usage 'for ltr(YO, tmplist) { print YO }' 2 arg, specify dummy
// usage 'for ltr(XO, tmplist, &x) { print XO,x }' :: 3 args, define counter (else i1 default)
// :: note that x, i1 must be defined
iterator ltr () { local i
if (numarg()==3) {$&3=0} else {i1 = 0}
if (numarg()==1) {
for i = 0, $o1.count() - 1 {
XO = $o1.object(i)
iterator_statement
i1+=1
}
tmpobj=$o1
} else {
for i = 0, $o2.count() - 1 {
$o1 = $o2.object(i)
iterator_statement
if (numarg()==3) { $&3+=1 } else { i1+=1 }
}
tmpobj=$o2
$o1 = nil
}
}
// proc shl() show a list
proc shl () {
if (numarg()==1) tmpobj=$o1 else tmpobj=tmplist
if (tmpobj.count==0) return
if (isstring(tmpobj.object(0),tstr)) {
for ltr(XO,tmpobj) print XO.s
} else for ltr(XO,tmpobj) print XO
}
// lfu() = ltr follow-up, pick out a single item from the last ltr request
proc lfu () {
if (numarg()==2) XO=$o1.object($2) else XO=tmpobj.object($1)
}
//* list iterator ltr2
// usage 'for ltr2(XO, YO, list1, list2) { print XO,YO }'
iterator ltr2() { local i
if (numarg()==5) $&5=0 else i1=0
if ($o3.count != $o4.count) { print "ltr2 ERROR: lists have different lengths" return }
for i = 0, $o3.count() - 1 {
$o1 = $o3.object(i)
$o2 = $o4.object(i)
iterator_statement
if (numarg()==5) { $&5+=1 } else { i1+=1 }
}
$o1=nil $o2=nil
}
//* list pairwise iterator ltrp
// usage 'for ltrp(XO, YO, list) { print XO,YO }' takes them pairwise
iterator ltrp() { local i
if (numarg()==4) {$&4=0} else {i1 = 0}
for (i=0;i<$o3.count()-1;i+=2) {
$o1 = $o3.object(i) $o2 = $o3.object(i+1)
iterator_statement
if (numarg()==4) { $&4+=1 } else { i1+=1 }
}
$o1=nil $o2=nil
}
//* list iterator sltr
// usage 'for sltr(XO, string) { print XO }'
iterator sltr() { local i
tmplist = new List($s2)
if (numarg()==3) {$&3=0} else {i1=0}
for i = 0, tmplist.count() - 1 {
$o1 = tmplist.object(i)
iterator_statement
if (numarg()==3) { $&3+=1 } else { i1+=1 }
}
$o1 = nil
}
//* listedit() allows you to remove things by clicking
proc listedit () {
if (numarg()==0) { print "listedit(list,str) gives browser(list,str) for removing items" return}
if (numarg()==1) {
if (! isstring($o1.object(0),temp_string_)) {print "Give name for string of object?" return }
sprint(temp_string_,"proc ledt1 () {sprint(temp_string_,%s,hoc_ac_,%s.object(hoc_ac_).%s)}","\"%d:%s\"",$o1,"s")
} else {
sprint(temp_string_,"proc ledt1 () {sprint(temp_string_,%s,hoc_ac_,%s.object(hoc_ac_).%s)}","\"%d:%s\"",$o1,$s2)
}
execute1(temp_string_)
$o1.browser("Double click on item to remove",temp_string_,"ledt1()")
sprint(temp_string_,"%s.remove(hoc_ac_)",$o1)
$o1.accept_action(temp_string_)
}
//* listXO() connects stuff to XO from a list
proc listXO () {
if (numarg()==1) {
$o1.browser("Double click")
sprint(temp_string_,"print hoc_ac_,\":XO -> \",%s.object(hoc_ac_) XO = %s.object(hoc_ac_)",$o1,$o1)
$o1.accept_action(temp_string_)
} else if (numarg()==2) {
$o1.browser($s2)
sprint(temp_string_,"XO = %s.object(hoc_ac_) print %s.object(hoc_ac_).%s",$o1,$o1,$s2)
$o1.accept_action(temp_string_)
} else if (numarg()==3) {
$o1.browser($s2)
sprint(temp_string_,"XO = %s.object(hoc_ac_) print %s.object(hoc_ac_).%s,%s.object(hoc_ac_).%s",$o1,$o1,$s2,$o1,$s3)
$o1.accept_action(temp_string_)
}
}
//* lcatstr(list,s1,s2,...) make new List("s1") new List("s2") ... in one list
proc lcatstr() { local i
if (numarg()<3) { print "lcatstr(l1,s1,s2,...) puts new Lists into l1" return }
$o1 = new List($s2)
for i=3,numarg() {
tmplist2 = new List($si)
for ltr(XO,tmplist2) { $o1.append(XO) }
}
}
//* sublist() places a sublist in LIST0 from LIST1 index BEGIN to END inclusive
proc sublist () { local ii
$o1.remove_all
for ii=$3,$4 {
$o1.append($o2.object(ii))
}
}
//* catlist() concats LIST2...LISTN on end of LIST1
proc catlist () { local i
for i = 2, numarg() {
for ltr(YO,$oi) {
$o1.append(YO)
}
}
}
//* mechlist() creates a LIST of all this CELL type's TEMPLATE type
// list, cell, template
// make a list of mechanisms belonging to a certain template
proc mechlist () { local num,ii
// mchnms = "" // not a good storage since runs out of room
if (numarg()==0) { print "mechlist(list, cell, template)" return}
$o1 = new List($s2)
num = $o1.count
for ii=0,num-1 {
sprint(temp_string_,"%s.append(%s.%s)",$o1,$o1.object(ii),$s3)
execute(temp_string_)
sprint(mchnms,"%s/%d/%s.%s",mchnms,ii,$o1.object(ii),$s3)
}
for (ii=num-1;ii>=0;ii=ii-1) { $o1.remove(ii) }
}
//* lp() loop through a list running command in object's context
// assumes list in tmplist
// with 1 args run $o1.object().obj_elem
// with 2 args run comm($o1.object().obj_elem)
proc lp () {
for ii=0,tmplist.count-1 {
printf("%s ",tmplist.object(ii))
if (numarg()==2) {
sprint(temp_string_,"%s(%s.%s)",$s2,tmplist.object(ii),$s1)
} else {
sprint(temp_string_,"%s.%s",tmplist.object(ii),$s1)
}
execute(temp_string_)
}
}
//* prlp() loop through a list printing object name and result of command
proc prlp () {
for ii=0,tmplist.count-1 {
printf("%s ",tmplist.object(ii))
if (numarg()==1) {
sprint(temp_string_,"print %s.%s",tmplist.object(ii),$s1)
execute(temp_string_)
} else { print "" }
}
}
//** repl_str(str,stra,strb,scratch): replace stra with strb in string
// will only replace first string match
proc repl_str() {
if (sfunc.substr($s1,$s2) == -1) { print $s2," not in ",$s1 return }
sfunc.tail($s1,$s2,$s4)
sprint($s4,"%s%s",$s3,$s4)
sfunc.head($s1,$s2,$s1)
sprint($s1,"%s%s",$s1,$s4)
}
objref aa
proc aaaa () { local flag
if (numarg()==2) { tmpfile.ropen($s1) aa=$o2 flag=0
} else if (numarg()==1) { tmpfile.ropen($s1) flag=1
} else { tmpfile.ropen("aa") flag=1 }
if (flag==1) if (isobj(aa,"List")) { aa.remove_all() } else { aa=new List() }
while (tmpfile.gets(temp_string_)>0) {
chop(temp_string_)
tmpobj=new String(temp_string_)
aa.append(tmpobj)
}
tmpobj=nil
}
//* var2obj() and canobj() -- find true object names
// var2obj("tstr"[,"objvar"]) replaces variable name with actual name of the object
// default into XO; optional second arg allows to place somewhere else
// eg tstr="TC[0].ampa" var2obj(tstr) -> AMPA[0]
proc var2obj () { local flag
if (numarg()==1) flag=1 else flag=0
if (flag) sprint($s1,"XO=%s",$s1) else sprint($s1,"%s=%s",$s2,$s1)
execute($s1) // change variable name to object name
if (flag) sprint($s1,"%s",XO) else sprint($s1,"%s",$s2)
}
//** objnum(OBJ) -- find object number
func objnum () {
sprint(temp_string_,"%s",$o1)
if (sscanf(temp_string_,"%*[^[][%d]",&x) != 1) x=-1
return x
}
//** canobj(obj[,"OBJVAR"]) -- default will assign to XO
// canonical object -- return canonical identity for an object
// eg canobj(tc,"YO") -- figure out what tc is and assign it to YO
proc canobj () { local flag
if (numarg()==1) flag=1 else flag=0
if (flag) sprint(tstr,"XO=%s",$o1) else sprint(tstr,"%s=%s",$s2,$o1)
execute(tstr) // change variable name to object name
sprint(tstr,"%s",$o1)
}
//* push() and pop() for objects -- returns
proc push () { local i
for i=1,numarg() stack.append($oi)
}
proc pop () { local i
if ((numarg()>0 && stack.count<numarg()) || stack.count==0) {
print "ERR: stack underflow" return
}
if (numarg()>=1) {
for i=1,numarg() {
$oi=stack.object(stack.count-1)
stack.remove(stack.count-1)
}
} else {
SO=stack.object(stack.count-1)
stack.remove(stack.count-1)
}
}
proc time () { local tti
prtime()
if (numarg()==1) execute1($s1) else execute1("run()")
tti=prtime()
if (tti<60) print tti,"s" else print tti/60,"m"
}
// END /usr/site/nrniv/local/hoc/declist.hoc
//================================================================
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/decvec.hoc
// $Id: decvec.hoc,v 1.100 2003/07/30 13:23:26 billl Exp $
proc decvec() {}
//* Declarations
objref ind, tvec, vec, vec0, vec1, tmpvec, vrtmp, veclist, veccollect
objref tmpobj, XO, YO, rdm
print "Loading decvec"
{ MSONUM=100 MSOSIZ=100 msomax=0 msoptr=0 objref mso[MSONUM] }
double x[4],y[4]
xx=0 // declare a scalar
ind = new Vector(100)
tvec = new Vector(100)
vec = new Vector(100)
vec0 = new Vector()
vec1 = new Vector()
vrtmp = new Vector()
veclist = new List()
veccollect = new List()
rdm = new Random()
if (! xwindows) {
objref graphItem
strdef temp_string_, temp_string2_
}
strdef xtmp
if (wopen("xtmp")) xtmp = "xtmp" else xtmp="/tmp/xtmp" // scratch file to save system output to
//* stuff that doesn't belong here
objref dir
dir = new List()
//** dired(list,file) - put together list of files matching 'file', calls 'ls -1 file'
// dired(list,file,1) file name to read for list of files
proc dired () {
if (numarg()==0) { print "dired(list,filename) adds the filename to list (use wildcards)"
return }
if (numarg()==3) {
tmpfile.ropen($s2)
} else {
sprint(temp_string_,"ls -1R %s > %s",$s2,xtmp) // list in order of creation time
system(temp_string_)
tmpfile.ropen(xtmp)
}
while (tmpfile.scanstr(temp_string_) != -1) {
tmpobj=new String()
tmpobj.s=temp_string_
$o1.append(tmpobj)
tmpfile.gets(temp_string_) // get rid of the rest of the line
}
}
//** lbrw(list,action) is used to put up a browser
// note action given without '()'
proc lbrw () {
$o1.browser($s2,"s")
sprint($s2,"%s()",$s2)
$o1.accept_action($s2)
}
//** l2v(S1,S2) makes a list(S1) and puts all the XO.S2 into vec
// eg l2v("IClamp","amp")
proc l2v () {
revec(vec)
for ltr(new List($s1)) {
sprint(tstr,"vec.append(%s.%s)",XO,$s2)
execute(tstr)
}
}
//* vector iterator vtr
// usage 'for vtr(&x, vec) { print x }'
iterator vtr() { local i
if (numarg()==3) {$&3=0} else {i1 = 0}
if (numarg()==1) {
for i = 0,$o1.size()-1 {
x = $o1.x[i]
iterator_statement
i1+=1
}
} else {
for i = 0,$o2.size()-1 {
$&1 = $o2.x[i]
iterator_statement
if (numarg()==3) { $&3+=1 } else { i1+=1 }
}
}
}
//* vector iterator vtr2, treat two vectors as pairs
// usage 'for vtr2(&x, &y, vec1, vec2) { print x,y }'
iterator vtr2() { local i,pairwise,noi1
noi1=pairwise=0
if (numarg()==3) { pairwise=1 i1=0 }
if (numarg()==4) if (argtype(4)==3) { pairwise=1 $&4=0 noi1=1}
if (pairwise) if ($o3.size%2!=0) { print "vtr2 ERROR: vec not even sized." return }
if (! pairwise) {
if ($o3.size != $o4.size) { print "vtr2 ERROR: sizes differ." return }
if (numarg()==5) {$&5=0 noi1=1} else {i1 = 0}
}
for i = 0,$o3.size()-1 {
$&1 = $o3.x[i]
if (pairwise) $&2=$o3.x[i+=1] else $&2=$o4.x[i]
iterator_statement
if (noi1) { if (pairwise) $&4+=1 else $&5+=1 } else i1+=1
}
}
//* iterator lvtr, step through a list and a vector together
// usage 'for lvtr(XO, &x, list, vec) { print XO,x }'
iterator lvtr() { local i
if ($o3.count < $o4.size) { printf("lvtr ERROR: vecsize > listsize: list %d,vec %d.\n",$o3.count,$o4.size) return }
if ($o3.count != $o4.size) { printf("lvtr WARNING: sizes differ: list %d,vec %d.\n",$o3.count,$o4.size) }
if (numarg()==5) {$&5=0} else {i1 = 0}
for i = 0, $o4.size()-1 {
$o1 = $o3.object(i)
$&2 = $o4.x[i]
iterator_statement
if (numarg()==5) { $&5+=1 } else { i1+=1 }
}
}
//* other iterators: case, scase, ocase
iterator case() { local i
i1 = 0
for i = 2, numarg() {
$&1 = $i
iterator_statement
i1+=1
}
}
iterator scase() { local i
i1 = 0
for i = 1, numarg() {
temp_string_ = $si
iterator_statement
i1+=1
}
}
// eg for scase2("a","b","c","d","e","f") print temp_string_,temp_string2_
iterator scase2() { local i
i1 = 0
if (numarg()%2==1) {print "ERROR: scase2 needs even number of args" return }
for i = 1, numarg() {
tmpobj=new String2()
tmpobj.s=$si i+=1 tmpobj.t=$si
iterator_statement
i1+=1
}
}
iterator ocase() { local i
i1 = 0
for i = 1, numarg() {
XO = $oi
iterator_statement
}
i1+=1
}
//* strm(STR,REGEXP) == regexp string match
func strm () { return sfunc.head($s1,$s2,"")!=-1 }
//* nind(targ,data,ind) fill the target vector with data NOT index by ind (opposite of v.index)
proc nind () {
if (! eqobj($o1,$o2)) $o1.copy($o2)
$o1.indset($o3,-1e20)
$o1.where($o1,">",-1e20)
}
//* vlk(vec)
// vlk(vec,max)
// vlk(vec,min,max)
// prints out a segment of a vector
vlk_width=20
proc vlk () { local i,j,min,max,dual,wdh,nonl
j=dual=0 nl=1 wdh=vlk_width
if (numarg()==1) { min=0 max=$o1.size-1 }
if (numarg()==2) if ($2==0) { nl=min=0 max=$o1.size-1 // vlk(vec,0) flag to suppress new lines
} else if ($2>0) { min=0 max=$2-1 } else { min=$o1.size+$2 max=$o1.size-1 }
if (numarg()==3) if ($3>-1) { min=$2 max=$3 } else { min=0 max=$o1.size-1 dual=1 }
if (numarg()==4) { min=$3 max=$4 dual=1 }
if (min<0) min=0
if (max>$o1.size-1) max=$o1.size-1
if (dual) if (max>$o2.size-1) max=$o2.size-1
for i=min,max {
if (dual) printf("%g:%g ",$o1.x[i],$o2.x[i]) else printf("%g ",$o1.x[i])
if ((j=j+1)%vlk_width==0 && nl) { print "" }
}
if (nl) print ""
}
//* vprf() prints 1,2 or 3 vectors in parallel to output file
proc vprf () { local x2
if (! tmpfile.isopen()) {
print "Writing to temp file 'temp'"
tmpfile.wopen("temp")
}
if (numarg()==1) {
for vtr(&x,$o1) { tmpfile.printf("%g\n",x) }
} else if (numarg()==2) {
for vtr2(&x,&y,$o1,$o2) { tmpfile.printf("%g %g\n",x,y) }
} else if (numarg()==3) {
for vtr2(&x,&y,$o1,$o2,&ii) { x2=$o3.x[ii] tmpfile.printf("%g %g %g\n",x,y,x2) }
}
tmpfile.close
}
//* vpr() prints 1,2 or 3 vectors in parallel to STDOUT
proc vpr () { local x2
if (numarg()==1) {
for vtr(&x,$o1) { printf("%g ",x) }
} else if (numarg()==2) {
for vtr2(&x,&y,$o1,$o2) { printf("%g:%g ",x,y) }
} else if (numarg()==3) {
for vtr2(&x,&y,$o1,$o2,&ii) { x2=$o3.x[ii] printf("%g:%g:%g ",x,y,x2) }
}
print ""
}
//* readvec(vec) read from line
proc readvec () {
$o1.resize(0)
while (read(xx)) $o1.append(xx)
vlk($o1)
}
//* popvec(), savenums, readnums, vecsprint, savevec, savestr
proc pushvec () { local i // same as .append, retained for compatability
for i=2, numarg() $o1.append($i)
}
proc insvec () { local i // insert a value into the vector
for i=2, numarg() $o1.append($i)
}
proc revec () { local i // clear vector then append
$o1.resize(0)
if (numarg()>1) if (argtype(2)==1) {
for i=2, numarg() $oi.resize(0)
} else {
for i=2, numarg() $o1.append($i)
}
}
proc zvec () { local i // make vectors zero size
for i=1, numarg() $oi.resize(0)
}
// savenums(x[,y,...]) save numbers to tmpfile via a vector
proc savenums () { local vv,i
vv=allocvecs(1)
for i=1, numarg() mso[vv].append($i)
mso[vv].vwrite(tmpfile)
dealloc(vv)
}
// readnums(&x[,&y...]) recover nums from tmpfile via a vector
proc readnums () { local vv,i
vv=allocvecs(1)
mso[vv].vread(tmpfile)
if (numarg()!=mso[vv].size) printf("readnums WARNING: args=%d;vec.size=%d\n",numarg(),mso[vv].size)
for i=1,numarg() if (i<=mso[vv].size) $&i = mso[vv].x[i-1]
dealloc(vv)
}
//** wrvstr(str) save string to a file by converting to ascii
proc wrvstr () { local vv,i
vv=allocvecs(1)
str2v($s1,mso[vv])
mso[vv].vwrite(tmpfile)
dealloc(vv)
}
// rdvstr(str) read string from a file via vread and conversion
proc rdvstr () { local vv,i
vv=allocvecs(1)
mso[vv].vread(tmpfile)
v2str(mso[vv],tstr)
print tstr
dealloc(vv)
}
proc str2v () {
$o2.resize(0)
while (sfunc.len($s1)>0) {
sscanf($s1,"%c%*s",&x)
sfunc.right($s1,1)
$o2.append(x)
}
}
proc v2str () {
$s2=""
for vtr(&x,$o1) sprint($s2,"%s%c",$s2,x)
}
//* remove last entry
func popvec () { local sz, ret
sz = $o1.size-1
ret = $o1.x[sz]
$o1.resize[sz]
return ret
}
//* chkvec (look at last entry)
func chkvec () { if ($o1.size>0) return $o1.x[$o1.size-1] else return -1e10 }
// vecsprint(strdef,vec)
proc vecsprint () { local ii
if ($o2.size>100) { return }
for ii=0,$o2.size-1 { sprint($s1,"%s %g ",$s1,$o2.x[ii]) }
}
// savevec([list,]vec1[,vec2,...]) add vector onto veclist or other list if given as 1st arg
// don't throw out vectors
proc savevec () { local i,flag,beg
if (isobj($o1,"List")) beg=2 else beg=1
for i=beg, numarg() {
if (veccollect.count>0) { // grab a vector from garbage collection
tmpvec=veccollect.object(veccollect.count-1)
veccollect.remove(veccollect.count-1)
} else tmpvec = new Vector($oi.size)
tmpvec.copy($oi)
if (beg==2) $o1.append(tmpvec) else veclist.append(tmpvec)
tmpvec = nil
}
}
proc prveclist () {
tmpfile.wopen($s1)
for ltr(XO,veclist) XO.vwrite(tmpfile)
tmpfile.close()
}
proc rdveclist () {
clrveclist()
tmpfile.ropen($s1)
while (vec.vread(tmpfile)) savevec(vec)
tmpfile.close()
}
proc rdxy () { local a
a = allocvecs(1)
revec(ind,vec)
tmpfile.ropen("aa")
mso[a].scanf(tmpfile)
if (mso[a].size%2!=0) {print "rdxy ERR1 ",mso[a].size return}
for vtr2(&x,&y,mso[a]) {ind.append(x) vec.append(y)}
print ind.size," points read from aa into ind and vec"
dealloc(a)
}
// closest(vec,num) -- return ind for vec member closest to num
func closest () { local a,ret
a=allocvecs(1)
mso[a].copy($o1) mso[a].sub($2) mso[a].abs
ret=mso[a].min_ind
dealloc(a)
return ret
}
proc clrveclist () {
for ltr(XO,veclist) { XO.resize(0) veccollect.append(XO) }
veclist.remove_all()
}
// savestr(str1...) add string obj onto tmplist
proc savestr () { local i
if (argtype(1)==1) for i=2, numarg() $o1.append(new String($si)) else {
for i=1, numarg() tmplist.append(new String($si))
}
}
// redund with v.count in vecst.mod
func vcount () { local val,sum
val=$2 sum=0
for vtr(&x,$o1) if (x==val) sum+=1
return sum
}
// tvecl() -- transpose veclist
proc tvecl () { local cnt,sz,err,ii,p
err = 0
cnt = veclist.count
sz = veclist.object(0).size
for ltr(XO,veclist) if (XO.size!=sz) err=i1
if (err) { print "Wrong size vector is #",i1 return }
p = allocvecs(1,cnt) mso[p].resize(cnt)
for ii=0,sz-1 {
for jj=0,cnt-1 {
XO=veclist.object(jj)
mso[p].x[jj] = XO.x[ii]
}
savevec(mso[p])
}
for (jj=cnt-1;jj>=0;jj-=1) { veccollect.append(veclist.object(jj)) veclist.remove(jj) }
}
//* vinsect(v1,v2,v3) -- v1 gets intersection (common members) of v2,v3
// replaced by v.insct() in vecst.mod
proc vinsect () {
$o1.resize(0)
for vtr(&x,$o2) for vtr(&y,$o3) if (x==y) $o1.append(x)
}
//* vecsplit(vec,vec1,vec2[,vec3,...])
// splits vec into other vecs given
proc vecsplit () { local num,ii,i
num = numarg()-1 // how many
for i=2,numarg() $oi.resize(0)
for (ii=0;ii<$o1.size;ii+=num) {
for i=2,numarg() if (ii+i-2<$o1.size) $oi.append($o1.x[ii+i-2])
}
}
//* vecsort(vec,vec1,vec2[,vec3,...])
// sorts n vecs including first vec by first one
proc vecsort () { local i,inv,scr,narg
narg=numarg()
if (narg<2 || narg>10) {print "Wrong #args in decvec.hoc:vecsort" return}
scr=inv=allocvecs(2) scr+=1
$o1.sortindex(mso[inv])
mso[scr].resize(mso[inv].size)
sprint(temp_string_,"%s.fewind(%s,%s,%s",mso[scr],mso[inv],$o1,$o2)
for i=3,narg sprint(temp_string_,"%s,%s",temp_string_,$oi)
sprint(temp_string_,"%s)",temp_string_)
execute(temp_string_)
dealloc(inv)
}
//* vdelind() -- delete a single index
proc vdelind () { local i,iin
iin = $2
if (iin<0) iin=$o1.size+iin
if (iin>$o1.size-1 || iin<0) {
printf("vdelind Error: index %d doesn't exist.\n",iin) return }
if (iin<$o1.size-1) $o1.copy($o1,iin,iin+1,$o1.size-1)
$o1.resize($o1.size-1)
}
//* mkveclist(num[,sz]) recreate veclist to have NUM vecs each of size SZ (or MSOSIZ)
proc mkveclist () { local ii,num,sz,diff
num=$1
diff = num-veclist.count
if (numarg()==2) { sz=$2 } else { sz = MSOSIZ }
if (diff>0) {
for ii=0,diff-1 {
tmpvec = new Vector(sz)
veclist.append(tmpvec)
}
} else if (diff<0) {
for (ii=veclist.count-1;ii>=num;ii=ii-1) { veclist.remove(ii) }
}
for ltr(XO,veclist) { XO.resize(sz) }
}
//* allocvecs
// create temp set of vectors on mso
// returns starting point on mso
// eg p = allocvecs(3)
// access these vectors by mso[p+0] ... [p+2]
func allocvecs () { local ii, llen, sz, newv
if (numarg()==0) { print "p=allocvecs(#), access with mso[p], mso[p+1]..." return 0}
newv = $1
if (numarg()==2) { sz=$2 } else { sz=MSOSIZ }
llen = msoptr
for ii=msomax,msoptr+newv-1 { // may need new vectors
if (ii>=MSONUM) { print "alloc ERROR: MSONUM exceeded." return 0 }
mso[ii] = new Vector(sz)
}
for ii=0,newv-1 {
mso[msoptr].resize(0)
msoptr = msoptr+1
}
if (msomax<msoptr) msomax = msoptr
return llen
}
//** dealloc(start)
// remove temp set of vectors from mso
proc dealloc () { local ii,min
if (numarg()==0) { min = 0 } else { min = $1 }
msomax = msoptr
msoptr = min
}
//* vecconcat(vec1,vec2,...)
// destructive: concatenates all vecs onto vec1
proc vecconcat () { local i
if (numarg()<2) { print "vecconcat(v1,v2,...) puts all into v1" return }
for i=2,numarg() {
$o1.copy($oi,$o1.size)
}
}
//** vecelim(v1,v2) eliminates items in v1 given by index vec v2
proc vecelim () {
for vtr(&x,$o2) { $o1.x[x]= -1e20 }
$o1.where($o1,"!=",-1e20)
}
//** veceq() like vec.eq but don't have to be same size and shows discrepency
func veceq () { local sz1,sz2,eq,beg,ii,jj,kk
sz1=$o1.size sz2=$o2.size
if (numarg()==3) beg=$3 else beg=0
if (sz1!=sz2) printf("%s %d; %s %d\n",$o1,sz1,$o2,sz2)
ii=0 jj=beg
while (ii<sz1 && jj<sz2) {
if ($o1.x[ii]!=$o2.x[jj]) {
eq=0
printf("Differ at %d %d\n",ii,jj)
for kk=-10,10 if ((ii+kk)>=0 && (ii+kk)<sz1 && (jj+kk)>=0 && (jj+kk)<sz2) {
printf("(%d)%g:(%d)%g ",(ii+kk),$o1.x[ii+kk],(jj+kk),$o2.x[jj+kk]) }
print ""
break
} else eq=1
ii+=1 jj=ii+beg
}
return eq
}
//* isstring() determine if object $o1 is of type string, if so return the string in [$s2]
func isstring () {
sprint(tstr,"%s",$o1)
if (sfunc.substr(tstr,"String")==0) {
if (numarg()==2) sprint($s2,"%s",$o1.s)
return 1
} else {
if (numarg()==2) sprint($s2,"%s",$o1)
return 0
}
}
//** isassigned() checks whether an object is Null
func isassigned () {
sprint(temp_string_,"%s",$o1)
if (sfunc.substr(temp_string_,"NULLobject")==0) {
return 0
} else {
return 1
}
}
//** isit() like isassigned() but takes a string instead
func isit () {
sprint(temp_string_,"XO=%s",$s1)
execute(temp_string_) // XO points to the thing
sprint(temp_string_,"%s",XO) // what is XO
if (sfunc.substr(temp_string_,"NULLobject")==0) {
return 0
} else {
return 1
}
}
//** isob(s1,s2) like isobj but takes string statt obj
func isob () {
sprint(temp_string_,"XO=%s",$s1)
execute(temp_string_) // XO points to the thing
sprint(temp_string_,"%s",XO)
if (sfunc.substr(temp_string_,$s2)==0) {
return 1
} else {
return 0
}
}
//** eqobj(o1,o2) checks whether 2 objects are the same
func eqobj () { return object_id($o1) == object_id($o2) }
//** isobj(o1,s2) checks whether object $o1 is of type $s2
func isobj () {
sprint(temp_string_,"%s",$o1)
if (sfunc.substr(temp_string_,$s2)==0) {
return 1
} else {
return 0
}
}
// destructive of $s1
func str2num () { local ii
sscanf($s1,"%d",&x)
return x
}
// like perl chop -- removes the last character
proc chop () { sfunc.left($s1,sfunc.len($s1)-1) }
// intervals(TRAIN,OUTPUT)
proc intervals () { local a
if ($o1.size<=1) { printf("%s size <2 in intervals()\n",$o1) return }
$o2.deriv($o1,1,1)
}
proc downcase () { local len,ii,let,diff,min,max
diff=32 min=65 max=90
if (numarg()==2) { diff=-diff min=97 max=122 } // if flag -> upcase
len = sfunc.len($s1)
for ii=1,len {
sscanf($s1,"%c%*s",&x)
sfunc.right($s1,1)
if (x>=min&&x<=max) {
sprint($s1,"%s%c",$s1,x+diff)
} else sprint($s1,"%s%c",$s1,x) // just rotate the letter
}
}
// newlst() puts a newline in the middle of a string
proc newlst () { local l
if (numarg()>1) l=$2 else l=int(sfunc.len($s1)/2)
temp_string_=$s1
temp_string2_=$s1
sfunc.left(temp_string_,l)
sfunc.right(temp_string2_,l)
sprint($s1,"%s\n%s",temp_string_,temp_string2_)
}
//* hist(g,vec,max,width)
proc hist () { local a,b,c,max,wid,ii,jj
max=$3 wid=$4
a=b=c=allocvecs(3) b+=1 c+=2
$o1.erase()
mso[c].hist($o2,0,int((max+wid)/wid),wid)
mso[a].resize(2*mso[c].size())
mso[a].indgen(.5)
mso[a].apply("int")
mso[b].index(mso[c], mso[a])
mso[a].mul(wid)
mso[b].rotate(1)
mso[b].x[0] = 0
mso[b].append(mso[b].x[mso[b].size-1],0)
mso[a].append(max,max)
mso[b].plot($o1, mso[a])
jj=-1
for (ii=0;ii<max;ii+=wid) {
$o1.beginline() $o1.line(ii,0) $o1.line(ii,mso[c].x[jj+=1])
if (mso[c].x[jj]!=0) $o1.mark(ii+wid/2,mso[c].x[jj],"O",6,2,2)
}
$o1.flush()
$o1.size(0,max,0,mso[b].max)
dealloc(a)
}
// END /usr/site/nrniv/local/hoc/decvec.hoc
//================================================================
strdef grep // LINUX grep requires -a to handle a binary file
strdef ddir,msg
if (sfunc.substr(osname,"inux")==1) grep="grep -a" else grep="grep"
ddir = "data"
gvmarkflag=gveraseflag=0
//* abbreviated proc alls
proc pwpl () { pwman_place(500,500) }
proc vp () { vecpanel() }
proc ap () { if (numarg()==1) attrpanl($1) else attrpanl(0) }
proc gp () { if (numarg()==1) rpanel($1) else pbrgr("Graph","gv") }
//* templates
//** attrpanl(attribute panel) template stores the information about
// the attributes of a particular set of graphs including line colors,
// world coordinates, ...
// glist is a list of all graphs created from this panel
// llist is a list of available names and associated vectors or locations
begintemplate panattr
public color,line,super,curcol,graph,filename,comment
public glist,llist,tvec,size,shift,vsz,vjmp,tloc,vloc,remote
public printStep,entries,segments,bytes
public clear
double color[1],line[1],super[1],curcol[1],printStep[1],remote[1]
double size[4],entries[1],segments[1],bytes[1],shift[1]
double vsz[2],tloc[1],vloc[1],vjmp[1]
objref glist,llist,tvec
strdef filename,comment
proc init() {
if (numarg()==1) filename = $s1
color=1 line=1 curcol=1 tloc=-1 super=0 bytes=0 vjmp=50 entries=1 segments=1
vsz[0] = 300 vsz[1] = 200
glist = new List()
llist = new List()
tvec = new Vector(0)
}
proc remgrs () {
glist.remove_all
glist = nil
glist = new List()
}
proc clear() {
bytes=0 entries=1 segments=1
comment = ""
llist.remove_all()
}
endtemplate panattr
//** vfile_line (vector file line) template gives information about a line
// in a file that gives a vector: name, size and location
begintemplate vfile_line
public name, size, loc, num
strdef name
double size[1],loc[1],num[1],tvec[1]
proc init () {
name=$s1 size=$2 num=$4
double loc[num],tvec[num]
loc[0] = $3
}
endtemplate vfile_line
//** vitem (vector item) is an internal vector used to store output from
// new vitem(var_name,vec_size,friendly_name)
// a simulation holds the name and the vector itself
begintemplate vitem
external cvode_local
public tvec,vec,var
objref tvec,vec // vector
strdef var // variable name
proc init () {
var=$s1
if (cvode_local()==1) tvec=new Vector($2) else {
// print "WARNING CVODE LOCAL IS NOT SET"
}
vec=new Vector($2)
// NB label is labile
if (numarg()==3) vec.label($s3) else vec.label("") // use label for friendly name
}
endtemplate vitem
//* object declarations
objref vite, scob, printlist, panobj, panobjl, szstr[4], g[10]
panobj = new panattr(simname)
panobjl = new List()
printlist = new List()
panobjl.append(panobj) // global graphing attributes
panobj.llist = printlist
tmpfile = new File()
strdef filename, recstr, grvecstr, readtag
readtag = "^//[:pbCM ]" // regexp used to identify header in mixed binary files
for ii=0,3 { szstr[ii] = new String() }
{ szstr[0].s="Set xmin" szstr[1].s="Set xmax" szstr[2].s="Set ymin" szstr[3].s="Set ymax" }
multi_files = 1 // set 0 to show individual segments of multi-seg files
dec_runnum = 1 // whether to decrement runnum when saving a new file
byte_store = 4 // store as ascii (0), byte (1), int (2), float (3), double (4)
tvec_bytesize = 4 // always store tvecs with more precision
show_panel = 1 // whether or not to put a full panel up when a file is read
outvecint = 0 // dump vectors every outvecint time if not 0
outvect = 0 // time for next vec dump
labelm = 1 // set to 0 to turn off labeling
strdef rvvec_name
rvvec_name = "vec"
//* store cvode state in a double in form active.local
func cvode_status () { return cvode_active() + cvode_local()/10 }
proc ulv () {
using_cvode_ = cvode_active()
use_lvardt_ = cvode_active() && cvode_local()
}
cvode_state = cvode_status()
//** return true and update cvode_state if cvode state has changed
func cvode_change () {
if (cvode_state!=cvode_status()) {
cvode_state=cvode_status() return 1
} else { return 0 }
}
//** verbose form of cvode_change
func cvode_what () { local act,loc,newstat,newact,newloc
act=int(cvode_state) loc=(cvode_state-act)*10
newstat = cvode_status()
if (cvode_state!=newstat) {
newact=int(newstat) newloc=(newstat-newact)*10
printf("Updating active/local from %d/%d to %d/%d\n",act,loc,newact,newloc)
cvode_state=cvode_status() return 1
} else {
printf("cvode_state: active %d, local %d\n",act,loc)
return 0
}
}
//* vecpanel() main panel
proc vecpanel() {
fchooser_flag = 0 // used to initialize the file chooser
sprint(temp_string_,"%s Vectors",simname)
xpanel(temp_string_)
xbutton("Graph from file","fchooser(-1)")
xbutton("Graph vector","pbrgr(\"Graph\",\"gv\")")
xbutton("Archive to file:","pbrgr(\"Archive\",\"pv\")")
xbutton("Archive all to output_file","pvall()")
xstatebutton("Superimpose",&panobjl.object(0).super)
xbutton("Attributes","attrpanl(0)")
redo_printlist()
redo_attrlist()
xpanel()
}
//* pbrgr(browser name,action) is used to put up a browser
// note action given without '()'
proc pbrgr () {
if (printlist.count == 1) {
gv(0)
} else if (printlist.count <= 8) {
mkpanel("Vector",$s1,$s2)
} else {
sprint(temp_string_,"%s:%s",simname,$s1)
printlist.browser(temp_string_,"var")
sprint($s2,"%s()",$s2)
printlist.accept_action($s2)
}
}
//* record(list,what,vecptr) from items in $o1 object(ii).$s2 in vectors
// $o1 is the list arg $s2 is the thing to be recorded [eg soma.v(0.5)]
// optional $3 is the name of an object belonging to list items that will
// serve as a pointer to the recording vector
proc record () { local ii, dur, na3
for ltr(XO,$o1) {
sprint(recstr,"%s.%s",XO,$s2)
new_printlist_item(recstr)
if (numarg()==3) {
sprint(temp_string_,"%s.%s=printlist.object(printlist.count-1).vec",XO,$s3)
execute(temp_string_) // only way to get call by ref for object
}
}
}
//* record_spks(list[,what]) takes a list of netcons and puts in printlist objects for them
// assumes that the PP will be called pp
proc record_spks () { local ii,flag
ulv()
for ltr(XO,$o1) {
flag=1
if (cvode.netconlist(XO, "", "").count>0) {
YO=cvode.netconlist(XO, "", "").object(0)
sprint(recstr,"%s%s",YO.precell,"_spks")
} else if (cvode.netconlist(XO.pp, "", "").count>0) {
YO=cvode.netconlist(XO.pp, "", "").object(0)
sprint(recstr,"%s%s",YO.pre,"_spks")
} else { printf("%s not connected.\n",XO) flag=0 }
if (flag) {
vite = new vitem(recstr,100)
if (use_lvardt_) { YO.record(vite.tvec) vite.vec.resize(0) } else YO.record(vite.vec)
printlist.append(vite)
}
}
YO=nil
}
//* redo_printlist() menu allows removal or addition of inidividual items
proc redo_printlist() {
xmenu("Print list")
xbutton("Add var to printlist","redolist(0)")
xbutton("Clear printlist","printlist.remove_all()")
xbutton("Remove item from printlist","redolist(1)")
xbutton("Vector.op","redolist(2)")
xbutton("Proc(vector)","redolist(6)")
xbutton("Link XO->vec,YO->tvec","redolist(7)")
xbutton("Graph vector","redolist(4)")
xbutton("Save printlist","redolist(5)")
xbutton("Add all obj's of this type to printlist","redolist(3)")
xmenu()
}
//* redolist() set of functions for altering the printlist called by redo_printlist()
proc redolist () { local ii,flag
flag = $1 rdstr = 1
if (numarg()==2) { recstr=$s2 rdstr=0 }
if (flag==0) {
if (scob.run()) {
scob.text(temp_string_)
new_printlist_item(temp_string_)
}
} else if (flag==1) { // remove item
printlist.browser("Double click on item to remove","var")
printlist.accept_action("printlist.remove(hoc_ac_)")
} else if (flag==2) { // .op
if (rdstr) string_dialog("Enter operation to be run on vec",recstr)
temp_string_ = "\"%s.%s = %g\\n\""
sprint(temp_string_,"printf(%s,printlist.object(hoc_ac_).var,\"%s\",x=printlist.object(hoc_ac_).vec.%s)",temp_string_,recstr,recstr)
printlist.browser(recstr,"var")
printlist.accept_action(temp_string_)
} else if (flag==3) { // put another set of things on list
if (rdstr) string_dialog("String to be used as suffix for all items on list",recstr)
scob.run()
scob.text(temp_string_)
tmplist = new List(temp_string_)
record(tmplist,recstr)
} else if (flag==4) { // show it
pbrgr("Graph","gv")
} else if (flag==5) {
fchooser_flag = 0
tmpfile.chooser("a","Add printlist to file")
if (tmpfile.chooser()==1) {
tmpfile.printf("\nproc make_printlist() { \n")
tmpfile.printf(" printlist.remove_all()\n")
for ii=0,printlist.count-1 {
tmpfile.printf(" new_printlist_item(\"%s\")\n",printlist.object(ii).var)
}
tmpfile.printf("}\nmake_printlist()\n")
tmpfile.close()
}
} else if (flag==6) { // proc(vec)
if (rdstr) string_dialog("Enter procedure name \"proc\",called as proc(vec,var,num)",recstr)
printlist.browser(recstr,"var")
sprint(temp_string_,"%s(printlist.object(hoc_ac_).vec,printlist.object(hoc_ac_).var,hoc_ac_)",recstr)
printlist.accept_action(temp_string_)
} else if (flag==7) { // XO is pointer to vec
printlist.browser("XO","var")
sprint(temp_string_,"{tmpobj=printlist.object(hoc_ac_) print hoc_ac_,tmpobj.var XO=tmpobj.vec YO=tmpobj.tvec}")
printlist.accept_action(temp_string_)
}
}
//** lkprl([num]) link X0 to vector in printlist, optional arg can be pos or neg
proc lkprl () { local num,cnt
cnt = printlist.count
if (numarg()==1) {if ($1>=0) num=$1 else num=cnt+$1} else num=cnt-1
if (num>cnt-1 || num<0) {
printf("%d!: Only %d items (0-%d) in list.\n",num,cnt,cnt-1) return
}
print num,":XO -> ",printlist.object(num).var
XO = printlist.object(num).vec
YO = printlist.object(num).tvec
}
//** cpplitem([num]) copy X0 to new item in printlist, optional arg can be pos or neg
proc cpplitem () { local num,cnt
cnt = printlist.count
if (numarg()>0) {if ($1>=0) num=$1 else num=cnt+$1} else num=cnt-1
if (num>cnt-1 || num<0) {
printf("%d!: Only %d items (0-%d) in list.\n",num,cnt,cnt-1) return
}
if (numarg()>1) grvecstr=$s2 else sprint(grvecstr,"Copy_of_%s",printlist.object(num).var)
new_printlist_item(grvecstr,printlist.object(num).vec)
print printlist.count-1,":XO -> ",grvecstr
XO = printlist.object(printlist.count-1).vec
}
//** cpplitem([num]) copy X0 to new item in printlist, optional arg can be pos or neg
proc chgplname () { local num,cnt
cnt = printlist.count
if (numarg()>0) {if ($1>=0) num=$1 else num=cnt+$1} else num=cnt-1
if (num>cnt-1 || num<0) {
printf("%d!: Only %d items (0-%d) in list.\n",num,cnt,cnt-1) return
}
printlist.object(num).var=$s2
}
//* new_printlist_item(name) adds this item to the printlist
// new_printlist_item(name,vec) adds this vec to the printlist
// new_printlist_item(name,num,vec) adds this vec to the printlist under name_num0,name_num1,...
proc new_printlist_item () { local dur,pln
ulv()
panobj = panobjl.object(0)
if (outvecint == 0) dur = tstop else dur = outvecint
grvecstr = $s1
remove_spaces(grvecstr,temp_string2_) // splits on '/'
// eg new_printlist_item(name,ii,vec)
if (numarg()>=3) { // allows formation of tags on the fly
sprint(temp_string_,"%s%s",grvecstr,":%d")
sprint(temp_string_,temp_string_,$2)
vite = new vitem(temp_string_,$o3.size,temp_string2_)
vite.vec.copy($o3)
if (numarg()==4) vite.tvec.copy($o4)
printlist.append(vite)
return
}
if (numarg()==2) { // second arg is a vector to store
vite = new vitem(grvecstr,$o2.size,temp_string2_)
vite.vec.copy($o2)
printlist.append(vite)
return
}
if (use_lvardt_) {
if (isobj(panobj.tvec,"Vector")) if (panobj.tvec.size!=0) { panobj.tvec.resize(0) panobj.tvec.play_remove() }
vite = new vitem(grvecstr,dur/printStep+10,temp_string2_)
panobj.printStep=-2
} else if (using_cvode_) {
vite = new vitem(grvecstr,dur/printStep+10,temp_string2_)
panobj.printStep=-1
if (panobj.tvec.buffer_size==0) {
panobj.tvec.resize(dur/printStep+10) panobj.tvec.resize(0)
}
panobj.tvec.record(&t)
} else {
if (panobj.tvec.size!=0) { panobj.tvec.resize(0) panobj.tvec.play_remove()}
panobj.printStep=printStep
vite = new vitem(grvecstr,dur/printStep+10,temp_string2_)
}
printlist.append(vite)
pln = printlist.count-1 // current printlist number
if (numarg()==2) $o2=vite.vec // allow user to assign a pointer
vite = nil
if (use_lvardt_) {
printlist.object(pln).vec.resize(dur/printStep+10)
printlist.object(pln).tvec.resize(dur/printStep+10)
sprint(temp_string_,\
"{cvode.record(&%s,printlist.object(%d).vec,printlist.object(%d).tvec)}",grvecstr,pln,pln)
} else if (using_cvode_) { // don't give an explicit printStep
printlist.object(pln).vec.resize(dur/printStep+10)
sprint(temp_string_,\
"{printlist.object(%d).vec.record(&%s)}",pln,grvecstr)
} else {
sprint(temp_string_,\
"printlist.object(%d).vec.record(&%s,%g)",pln,grvecstr,printStep)
}
execute(temp_string_)
}
// new_pri(NAME,TVEC,VEC) quick and dirty new_printlist_item
proc new_pri () {
vite = new vitem($s1,$o2.size)
if (numarg()==3) { vite.tvec.copy($o2) vite.vec.copy($o3) } else vite.vec.copy($o2)
printlist.append(vite)
vite=nil
}
//* prlexp(sz) expands all the vectors in printlist to size sz
proc prlexp () {
sz = $1
tvec.resize(sz)
for ltr(XO,printlist) { XO.vec.resize(sz) }
}
//* redo_attrlist() menu allows removal or addition of inidividual items
proc redo_attrlist() {
xmenu("Attribute panels")
xbutton("Read file","attrlist(0)")
xbutton("Remove","attrlist(1)")
xbutton("Show","attrlist(2)")
xbutton("Clear list","attrlist(3)")
xbutton("New","attrlist(4)")
xmenu()
}
//* attrlist() set of functions for altering panobjl (list of graph attributes)
proc attrlist() { local ii
if ($1==0) {
fchooser(-1)
} else if ($1==1) { // remove item
panobjl.browser("Double click on item to remove","filename")
panobjl.accept_action("panobjl.remove(hoc_ac_)")
} else if ($1==2) {
panobjl.browser("Double click on item",temp_string_,"numovecs()")
panobjl.accept_action("attrpanl(hoc_ac_)")
} else if ($1==3) { // clear but leave #0
for (ii=panobjl.count-1;ii>0;ii=ii-1) { panobjl.remove(ii) }
} else if ($1==4) { // create a new one without reading a file in
panobj = new panattr()
panobj.filename = "EMPTY"
panobjl.append(panobj)
panobj.remote = panobjl.count()-1
attrpanl(panobjl.count()-1)
} else if ($1==5) { // create one with given num and name
for ii=panobjl.count,$2 { // create more if needed
panobj = new panattr()
panobjl.append(panobj)
panobj.remote = ii
}
panobj = panobjl.object($2)
panobj.filename = $s3
panobj.comment = $s4
panobj.printStep = $5
}
}
// show the number of vectors as well as the name of the file
proc numovecs() { local num
if (hoc_ac_==0) num=printlist.count() else num=panobjl.object(hoc_ac_).llist.count()
sprint(temp_string_,"#%d %s: %d",hoc_ac_,panobjl.object(hoc_ac_).filename,num)
}
//* fchooser(attrnum) finds file and then create panel from it using rpanel
proc fchooser () { local attr0
attr0=$1
if (fchooser_flag == 0) { // create panel first time only
sprint(temp_string_,"v0*")
tmpfile.chooser("","Read from a file",temp_string_)
}
fchooser_flag = 1
if (tmpfile.chooser() == 1) {
// find out whether this is a vector file or not
tmpfile.getname(filename)
sfunc.tail(filename,"/data.*/",grvecstr) // just take the file name without the leading stuff
attrnum = read_vfile(attr0)
if (attrnum == 0) {print "ERROR in fchooser" return }// error
// a new one so should show something
if (attr0==-1) if (show_panel) rpanel(attrnum) else attrpanl(attrnum)
}
}
//* routines for reading in a vector file
//** read_vfile(attrnum) creates a panattr object from information in a file
// (uses grep to avoid loading big file)
// assumes file in tmpfile
func read_vfile () { local flag, ii, sz, loc, mult, sze, cloc, segs
if (numarg()==0) { print "read_vfile(attrnum,filename)" return 0 }
if (numarg()==2) filename = $s2
read_findattr($1) // set panobj and attrnum
// grab hold of the different lines using grep
file_with_dot(filename,temp_string_,temp_string2_) // put .filename into temp_string_
if (!tmpfile.ropen(temp_string_)) {
if (! tmpfile.ropen(filename)) { print "E1: Can't open ",filename // avoid grep error
return 0 }
sprint(temp_string2_,"%s '%s' %s > %s",grep,readtag,filename,temp_string_)
system(temp_string2_)
tmpfile.close()
if (! tmpfile.ropen(temp_string_)) { print "E2: Can't open ",temp_string_," (",filename,")"
return 0 }
flag = 0
} else flag = 1 // signifies that .file exists to use as key
while ((numr = tmpfile.scanstr(temp_string_)) != -1) { // throw out the leading '//'
// read the line
cloc = tmpfile.tell - numr // location of the beginning of this line
if (sfunc.head(temp_string_,"//[^b]",temp_string2_)==0) {
read_vinfo() // a line giving info about the file (eg comment)
} else { // NB: code in v60:516 to pickup byte_store value
if (panobj.bytes==0 && \
sfunc.head(temp_string_,"//b[1-9]",temp_string2_)==0) { panobj.bytes = 1 }
if (flag && panobj.entries>1) { // a .file with MULTI segs
tmpfile.seek(-numr,1) // backup to beginning of line
read_vdotfile()
} else if (panobj.segments > 1) { // mult segs: different times for same var
tmpfile.seek(-numr,1) // backup to beginning of line
panobj.segments = read_vsegs()
} else { // read each line in for itself
tmpfile.scanstr(temp_string_) // name of a var
sze = tmpfile.scanvar() // size of the vector or time it was dumped
loc = tmpfile.scanvar() // location of the vector
if (panobj.bytes) { tmpfile.seek(cloc) // go back and measure the line length
loc = loc + tmpfile.gets(temp_string2_) }
// create the item
if (! strcmp(temp_string_,"tvec")==0) {
tmpobj = new vfile_line(temp_string_,sze,loc,1)
panobjl.object(attrnum).llist.append(tmpobj)
tmpobj = nil
} else {
panobj.tvec.resize(0)
panobj.printStep=-1
panobj.tloc = loc // where to find tvec later
}
}
}
}
if (panobj.entries==1) panobj.entries = panobj.llist.count
if (! flag && panobj.segments>1) write_vsegs() // create key .file
if (! tmpfile.ropen(panobj.filename)) { print "E3: Can't open ",panobj.filename
return 0 }
if (panobj.printStep==-1) { rtvec(attrnum) // code for cvode_active()
} else if (panobj.printStep==0) panobj.printStep = printStep
return attrnum
}
//** read_findattr()
// see if want to use old attributes or start new ones
proc read_findattr () {
if ($1 > -1 && $1 < panobjl.count()) {
attrnum = $1
panobj = panobjl.object(attrnum)
panobj.clear()
panobj.filename = filename
} else { // create a new panel attribute object to hold color and line type
panobj = new panattr(filename)
panobjl.append(panobj)
panobj.remote = panobjl.index(panobj)
attrnum = panobjl.index(panobj)
}
}
//** read_vinfo()
// fill in panobj entries based on an information line in a vector file
proc read_vinfo () {
if (strcmp(temp_string_,"//printStep")==0) {
panobj.printStep = tmpfile.scanvar() // printstep==-1 means cvode
} else if (strcmp(temp_string_,"//:")==0) { // a comment
tmpfile.gets(temp_string_)
sfunc.head(temp_string_,"\n",panobj.comment) // chop final newline
} else if (strcmp(temp_string_,"//CPU")==0) { // the machine type for byte storage
tmpfile.scanstr(temp_string_)
if (strcmp(temp_string_,uname)!=0) {
printf("%s written from %s\n",filename,temp_string_)
}
} else if (strcmp(temp_string_,"//MULTI")==0) { // multiple lines for each entry
panobj.entries = tmpfile.scanvar()
if (multi_files) { panobj.segments = tmpfile.scanvar() }
} else {
printf("Line:\t%s\n\tnot recognized in %s\n",temp_string_,panobj.filename)
tmpfile.seek(-1,1)
tmpfile.gets(temp_string_) // clear this line out
}
}
//** read_vdotfile() read .file in abbreviated format (see write_vsegs)
proc read_vdotfile() { local loc,entries,segments,ii
entries=panobj.entries segments=panobj.segments
panobj.bytes = 1
for i=1,entries { // read this abbreviated file version (much faster)
tmpfile.scanstr(temp_string_)
loc = tmpfile.scanvar()
tmpobj = new vfile_line(temp_string_,-1,loc,segments) // don't set size
panobj.llist.append(tmpobj)
for ii=1,segments-1 { tmpobj.loc[ii] = tmpfile.scanvar() }
}
}
//** read_vsegs() read a file that is segmented with diff vectors at diff times
// (see outvecs)
func read_vsegs () { local segments,entries,i,ii,jj,sze,loc,ret,cloc,clocend,llen
entries=panobj.entries segments=panobj.segments ret=1
for i=1,entries { // usually will be the number of cells recorded
cloc = tmpfile.tell() // starting location in the file
tmpfile.scanstr(temp_string_)
tmpfile.scanstr(temp_string_) // name of a var
sze = tmpfile.scanvar() // size of the vector or time it was dumped
loc = tmpfile.scanvar() + (tmpfile.tell() - cloc) // add line length
cloc = tmpfile.tell() // a location where a vec begins
tmpobj = new vfile_line(temp_string_,sze,loc,segments)
panobj.llist.append(tmpobj)
for ii=1,segments-1 { // go through all the different time segs
for jj=1,entries-1 { // go through all the cells
if ((ret = tmpfile.gets(temp_string_))==-1) { break } // EOF error
}
clocend = tmpfile.tell() // loc of end of this seg
tmpfile.scanstr(temp_string_) tmpfile.scanstr(temp_string_) // name of a var
if (strcmp(temp_string_,tmpobj.name)!=0) { // name should match
printf("ERROR: %d not %d segs found (%s)\n",ii,segments,tmpobj.name)
segments = ii
break
}
tmpfile.scanvar() // a time
tmpobj.loc[ii] = tmpfile.scanvar()+(tmpfile.tell()-clocend) // where the vector starts
clocend = tmpfile.tell()
}
tmpfile.seek(cloc) // go back for next entry
}
tmpfile.seek(clocend) // go to end of all this stuff
return segments
}
//** write_vsegs()
// write out names of all entries along with locations where the vecs start
proc write_vsegs () { local ii
file_with_dot(filename,temp_string_,temp_string2_) // put .filename into temp_string_
sprint(temp_string2_,"grep '^//[^bM]' %s > %s",xtmp,temp_string_)
system(temp_string2_) // copy the non-location lines into the new file
tmpfile.aopen(temp_string_)
tmpfile.printf("//MULTI %d %d\n",panobj.entries,panobj.segments) // redo in case differs
for ltr(XO,panobj.llist) {
tmpfile.printf("%s ",XO.name)
for ii=0,panobj.segments-1 { tmpfile.printf("%d ",XO.loc[ii]) }
tmpfile.printf("\n")
}
tmpfile.close()
}
//** make_vdot_files() go through a list of filenames to convert into .file format
proc make_vdot_files () { local ii,sav,cnt
cnt = panobjl.count()
for ltr(XO,$o1) {
filename = XO.s
print "Processing ",filename
read_vfile(cnt) // don't overwrite one that's being used
}
}
//* print out the CPU name
proc vfcpu () {
sprint(temp_string_,"%s '^//CPU' %s",grep,$s1)
system(temp_string_)
}
//* rpanel() creates a panel from information in llist
proc rpanel () { local ii
print $1
attrnum = $1
panobj = panobjl.object(attrnum)
if (panobj.llist.count > 8) { rlist($1) return }
sprint(temp_string_,"#%d:%s ",attrnum,simname)
xpanel(temp_string_)
xlabel(panobj.filename)
for ii=0,panobj.llist.count-1 {
sprint(temp_string2_,"rv(%d,%d)",attrnum,ii)
xbutton(panobj.llist.object(ii).name,temp_string2_)
}
sprint(temp_string_,"attrpanl(%d)",attrnum)
xbutton("Attributes",temp_string_)
sprint(temp_string_,"lpvec(filename,vrtmp,%g)",panobj.printStep)
xbutton("Print last vec",temp_string_)
xbutton("Erase","ge()")
xpanel()
}
//* rlist(): like rpanel() but puts up a browser list instead of a panel
proc rlist () {
panobjl.object($1).llist.browser(panobjl.object($1).filename,"name")
sprint(temp_string_,"rv(%d,hoc_ac_)",$1)
panobjl.object($1).llist.accept_action(temp_string_)
}
//* rvlist(): like rpanel() but puts up a browser list instead of a panel
proc rvlist () { local flag,attrnum,rdstr
rdstr = 1
flag = $1 attrnum = $2
if (numarg()==3) { recstr=$s3 rdstr=0 }
if (flag==0) {
panobjl.object(attrnum).llist.browser(panobjl.object(attrnum).filename,"name")
sprint(temp_string_,"rvec(%d,hoc_ac_)",attrnum)
panobjl.object(attrnum).llist.accept_action(temp_string_)
} else if (flag==1) { // proc(vec)
if (rdstr) string_dialog("Procedure name: proc, called as proc(vec)",recstr)
panobjl.object(attrnum).llist.browser(recstr,"name")
sprint(temp_string_,"{rvec(%d,hoc_ac_) %s(%s)}",attrnum,recstr,rvvec_name)
panobjl.object(attrnum).llist.accept_action(temp_string_)
print attrnum,":",recstr,":",temp_string_,":",rvvec_name
} else if (flag==2) { // vec.command
if (rdstr) string_dialog("comm: print vec.comm",recstr)
panobjl.object(attrnum).llist.browser(recstr,"name")
sprint(temp_string_,"{rvec(%d,hoc_ac_) print %s.%s}",attrnum,rvvec_name,recstr)
panobjl.object(attrnum).llist.accept_action(temp_string_)
}
}
proc disptray() { print "Must load boxes.hoc to get trays" }
//* attrpanl() gives attributes for a set of graphs
proc attrpanl () { local ii,jj
attrnum = $1 // use global for xbuttn
sfunc.tail(panobjl.object(attrnum).filename,"data.*/",grvecstr)
sprint(temp_string_,"#%d:%s:%s (ATTRPANL)",attrnum,simname,grvecstr)
xpanel(temp_string_)
xvarlabel(panobjl.object(attrnum).filename)
xvarlabel(msg) msg = panobjl.object(attrnum).comment
sprint(temp_string_,"panobjl.object(%d).color",attrnum)
xvalue("Color(-1=multi)",temp_string_,1)
sprint(temp_string_,"panobjl.object(%d).line",attrnum)
xvalue("Line",temp_string_,1)
xstatebutton("Superimpose",&panobjl.object(attrnum).super)
xvalue("Superimpose - Graph[#]","gnum",1)
xbuttn("Graph limits","wvpanl(")
xmenu("Manipulate graphs")
xbutton("Mark","gvmarkflag=-(gvmarkflag-1) sprint(msg,\"Mark: %d\",gvmarkflag)")
xbutton("Erase/redraw","gveraseflag=-(gveraseflag-1) sprint(msg,\"Erase: %d\",gveraseflag)")
xbuttn("Label graphs","lblall(")
xbuttn("Erase graphs","geall(")
xbuttn("Remove graphs","remgrs(")
sprint(temp_string2_,"disptray(%d)",attrnum)
xbutton("Make tray",temp_string2_)
sprint(temp_string2_,"setrange(%d,3)",attrnum)
xbutton("Erase axes",temp_string2_)
sprint(temp_string2_,"for ltr(XO,panobjl.object(%d).glist) XO.exec_menu(\"View = plot\")",attrnum)
xbutton("View = plot",temp_string2_)
sprint(temp_string2_,"for ltr(XO,panobjl.object(%d).glist) XO.exec_menu(\"Crosshair\")",attrnum)
xbutton("Crosshair",temp_string2_)
sprint(temp_string2_,"for ltr(XO,panobjl.object(%d).glist) XO.exec_menu(\"NewView\")",attrnum)
xbutton("New view",temp_string2_)
sprint(temp_string2_,"for ltr(XO,panobjl.object(%d).glist) XO.exec_menu(\"Delete\")",attrnum)
xbutton("Delete Text",temp_string2_)
sprint(temp_string2_,"for ltr(XO,panobjl.object(%d).glist) XO.exec_menu(\"Move Text\")",attrnum)
xbutton("Move Text",temp_string2_)
sprint(temp_string2_,"for ltr(XO,panobjl.object(%d).glist) XO.exec_menu(\"Change Text\")",attrnum)
xbutton("Change Text",temp_string2_)
xmenu()
sprint(temp_string_,"panobjl.object(%d).remote",attrnum)
sprint(temp_string2_,"grall(%d)",attrnum)
xvalue("Graph all",temp_string_,0,temp_string2_)
if (attrnum != 0) {
xmenu("Manipulate vectors")
xbutton("Vector name","string_dialog(\"Change Vector name\",rvvec_name)")
xbuttn("Write to vector","rvlist(0,")
xbuttn("Proc(vector)","rvlist(1,")
xbuttn("vector.command","rvlist(2,")
xmenu()
xbuttn("Show full panel","rpanel(")
xbuttn("Change file","fchooser(")
} else {
xbutton("Show full panel","pbrgr(\"Graph\",\"gv\")")
}
xpanel()
}
// allows inclusion of attrnum for each item
proc xbuttn () { sprint(temp_string2_,"%s%d)",$s2,attrnum) xbutton($s1,temp_string2_) }
//* set something for attrpanl() to value
func attrset () { local attrnum, ii
if (numarg()==0) { printf("attrset(attrnum,\"thing\",val)\n")
} else if (numarg()==2) {
sprint(temp_string_,"tempvar = panobjl.object(%d).%s",$1,$s2)
execute(temp_string_)
return tempvar
} else {
sprint(temp_string_,"panobjl.object(%d).%s=%g",$1,$s2,$3)
execute(temp_string_)
return $3
}
}
proc wvpanl () { local attrnum, ii
attrnum = $1
sfunc.tail(panobjl.object(attrnum).filename,"data.*/",grvecstr)
sprint(temp_string_,"#%d:%s:%s (WVPANL)",attrnum,simname,grvecstr)
xpanel(temp_string_)
sprint(temp_string_,"%d Vectors",panobjl.object(attrnum).llist.count)
xlabel(temp_string_)
for ii=0,3 {
sprint(temp_string_,"panobjl.object(%d).size[%d]",attrnum,ii)
sprint(temp_string2_,"chrange(%d,%d)",attrnum,ii)
xvalue(szstr[ii].s,temp_string_,0,temp_string2_)
}
sprint(temp_string_,"panobjl.object(%d).shift",attrnum)
sprint(temp_string2_,"chrange(%d,-2)",attrnum)
xvalue("Shift L/R",temp_string_,0,temp_string2_)
sprint(temp_string2_,"chrange(%d,%d)",attrnum,-1)
xmenu("Other")
xbutton("Clear/Set to G0",temp_string2_)
sprint(temp_string2_,"viewplot(%d)",attrnum)
xbutton("View=plot",temp_string2_)
sprint(temp_string2_,"setrange(%d,0,tstop,-90,50)",attrnum)
xbutton("0,tstop,-90,50",temp_string2_)
xbutton("Clean graph list","collapsegrs()")
sprint(temp_string2_,"attrpanl(%d)",attrnum)
xbutton("Attributes",temp_string2_)
xmenu()
xpanel()
for ii=0,3 if (panobj.size[ii]==0) panobj.size[ii]=panobj.glist.object(0).size(ii+1)
}
//* remgrs() gets rid of all of the graphs (called from attrpanl)
proc remgrs () { local ii,cnt
if (isobj(graphItem,"Graph")) { graphItem.unmap graphItem = nil }
panobj = panobjl.object($1)
for ltr (XO,panobj.glist) XO.unmap()
panobj.glist.remove_all
}
//* collapsegrs () take off of glist graphs that have been closed on screen
proc collapsegrs () { local ii
if (numarg()==0) { panobj = panobjl.object(0)
} else { panobj = panobjl.object($1) }
for (ii=panobj.glist.count-1;ii>=0;ii-=1) {
if (panobj.glist.object(ii).view_count() == 0) {
panobj.glist.remove(ii)
}
}
}
//* viewplot() set the world for each graph correctly
proc viewplot () { local cnt,ii,flag,sz1,sz2,sz3,sz4
if (numarg()==2) flag=$2 else flag=-1
if (flag==0) { sz1=sz3=1e10 sz2=sz4=-1e10 }
panobj = panobjl.object($1)
for ltr(XO,panobj.glist) {
XO.size(&x[0])
if (flag==0) {
if (x[0]<sz1) sz1=x[0]
if (x[1]>sz2) sz2=x[1]
if (x[2]<sz3) sz3=x[2]
if (x[3]>sz4) sz4=x[3]
} else if (flag==9) {
XO.size(0,tstop,x[2],x[3])
} else { XO.size(x[0],x[1],x[2],x[3]) }
}
if (flag==9) { panobj.size[0]=0 panobj.size[1]=tstop }
if (flag==0) for ltr(XO,panobj.glist) XO.size(sz1,sz2,sz3,sz4)
}
//* nvwall() changes the size of the graphs
proc nvwall () { local cnt,ii,sz1,sz2,sz3,sz4,wd,ht
panobj = panobjl.object($1)
if (numarg()==3) { wd=$2 ht=$3 } else { wd=panobj.vsz[0] ht=panobj.vsz[1] }
cnt = panobj.glist.count()
for (ii=cnt-1;ii>=0;ii=ii-1) {
if (panobj.glist.object(ii).view_count()==0) {panobj.glist.remove(ii)
} else {
sz1 = panobj.glist.object(ii).size(1)
sz2 = panobj.glist.object(ii).size(2)
sz3 = panobj.glist.object(ii).size(3)
sz4 = panobj.glist.object(ii).size(4)
panobj.glist.object(ii).unmap()
panobj.vloc = panobj.vloc+panobj.vjmp
if (panobj.vloc > 700) { panobj.vloc = 0 }
panobj.glist.object(ii).view(sz1,sz3,sz2-sz1,sz4-sz3,0,panobj.vloc,wd,ht)
}
}
}
//* geall() erases all of the graphs
proc geall () { local cnt,ii
panobj = panobjl.object($1)
cnt = panobj.glist.count()
for ii=0,cnt-1 {
panobj.glist.object(ii).erase_all()
}
}
//* lblall(attrnum,label,#,xloc,yloc) put label on all of the graphs
// arg3 tells which single graph to put it on
proc lblall () { local cnt,ii,min,max,attrnum,lx,ly
if (numarg()==0) { printf("lblall(attrnum[,loc])\n") return }
attrnum = $1 panobj = panobjl.object(attrnum)
cnt = panobj.glist.count()
if (numarg()>2) { min=max=$3 } else { min=0 max=cnt-1 }
if (numarg()==5) { lx=$4 ly=$5 } else { lx=0.1 ly=0.8 }
if (numarg()>1) { if (sfunc.len($s2)>0) { temp_string_ = $s2
}} else if (attrnum==0) { temp_string_ = comment
} else sprint(temp_string_,"%s",panobjl.object(0).comment)
for ii=min,max {
panobj.glist.object(ii).color(panobj.color)
panobj.glist.object(ii).label(lx,ly,temp_string_)
// if (attrnum!=0&&ii<panobj.llist.count()) panobj.glist.object(ii).label(panobj.llist.object(ii).name)
}
}
//* relbl() put appropriate label on all of the graphs
proc relbl () { local cnt,ii,min,max,attrnum,lx,ly
if (numarg()==0) { printf("relbl(attrnum[,str])\n") return }
attrnum = $1 panobj = panobjl.object(attrnum)
cnt = panobj.glist.count()
if (numarg()==4) { lx=$3 ly=$4 } else { lx=0.1 ly=0.8 }
if (numarg()>1) panobj.glist.object(0).label($s2)
for ltr2(XO,YO,panobj.glist,panobj.llist) {
XO.color(0)
if (attrnum==0) XO.label(0.,.9,YO.var) else XO.label(0.,.9,YO.name)
XO.color(panobj.color)
XO.label(lx,ly,YO.vec.label)
}
}
//* grall() graphs all of the lines from the file
// use vector $o2 as indices for vectors (see tposvec)
proc grall () { local attrnum,cnt,ii,min,max,gr,skip,iskp,vind
if (numarg()==0) {printf("grall(attrnum[,min,max,remote,gr_offset,skipgr,iskp]): graph vectors.\n")
return }
attrnum=$1
panobj = panobjl.object(attrnum)
if (attrnum == 0) cnt = printlist.count() else cnt = panobj.llist.count()
// will reset max if is vector with numarg()==2
if (numarg()>2) { min=$2 max=$3 } else { min=0 max=cnt-1 }
// with 2 args, vector $o2 gives indices for vectors (see tposvec)
if (numarg()==2) { vind=1 min=0 max=$o2.size-1 } else vind=0
if (numarg()>3) { panobj.super=1 panobj.remote=$4 }
if (numarg()>4) gr=$5 else gr=0
if (numarg()>5) skip=$6 else skip=1
if (numarg()>6) iskp=$7 else iskp=1
if (iskp==0) iskp=1 if (skip==0) skip=1
if (panobj.super==1 && panobj.remote==attrnum && panobj.glist.count==0) {
remgrs(attrnum)
print "Creating plot"
skip=0
newPlot(0,tstop,-100,100) panobj.glist.append(graphItem)}
if (panobj.super==0 && panobj.glist.count==0) panobj.size[1]=0
for (ii=min;ii<=max;ii+=iskp) {
if (panobj.super == 1) {
if (gr >= panobjl.object(panobj.remote).glist.count()) break
graphItem = panobjl.object(panobj.remote).glist.object(gr)
gr=gr+skip
}
if (vind) rv($1,$o2.x[ii]) else rv($1,ii)
}
}
// tposvec(rows,cols): generate the indices for a transposed matrix of rows x cols
proc tposvec () { local rows,cols,i,j
rows=$2 cols=$3
$o1.resize($2*$3)
for (i=0;i<rows;i+=1) for (j=0;j<cols;j+=1) $o1.x[j*rows+i]=i*cols+j
}
// fliptb(rows,cols): generate the indices for a transposed matrix of rows x cols
proc fliptb () { local rows,cols,i,j,p
rows=$2 cols=$3
if ($o1.size != $2*$3) {print "Wrong size vector in fliptb()" return}
p = allocvecs(1) mso[p].resize(rows)
for (j=0;j<cols;j+=1) {
mso[p].copy($o1,j*rows,(j+1)*rows-1)
mso[p].reverse
$o1.copy(mso[p],j*rows)
}
}
//* setrange() sets the range
// setrange(attrnum,x0,x1,y0,y1)
proc setrange () { local i,ii
if (numarg()==0){print "setrange(attrnum,x0,x1,y0,y1)\n setrange(attrnum,3) erases axes" return}
panobj = panobjl.object($1)
if (numarg()==1) { for ltr(XO,panobj.glist) XO.size(0,tstop,-100,50)
} else if (numarg()==2) { for ltr(XO,panobj.glist) XO.xaxis(3)
} else if (numarg()==3) { for ltr(XO,panobj.glist) XO.size(0,tstop,$2,$3)
} else {
panobj.size[0]=$2
for ltr(XO,panobj.glist) XO.size($2,$3,$4,$5)
for i=2,5 panobj.size[i-2]=$i
}
for ii=0,3 if (panobj.size[ii]==0) panobj.size[ii]=panobj.glist.object(0).size(ii+1)
}
//* grransel() -- graph range select
proc setgrransel () { local attrnum
attrnum=$1
panobj = panobjl.object(attrnum)
for ltr(XO,panobj.glist) {
XO.menu_remove("REVIEW")
sprint(tstr,"proc p%d%d(){grransel($1,$2,$3,$4,%d,%d,%s)}",attrnum,i1,attrnum,i1,XO)
execute1(tstr)
sprint(tstr,"p%d%d",attrnum,i1)
XO.menu_tool("REVIEW", tstr)
XO.exec_menu("REVIEW")
}
}
//** grransel(): CTL-hit == Crosshair
// SHT-hit == resize
// hit-drag-release == show in square
// SHT-hit-drag-release == show new thing there
// Type: press (2), drag (1), release (3)
// Keystate: META-SHT-CTL eg 101=5 is META-CTL
grrcnt=-1
proc grransel () { local type, x0, y0, keystate, ii, attrnum, gr
type=$1 x0=$2 y0=$3 keystate=$4 attrnum=$5 gr=$6
graphItem=$o7 // = panobj.glist.object(gr)
panobj=panobjl.object(attrnum)
if (keystate==1 && type==2) { graphItem.exec_menu("Crosshair") // CTL-MOUSE-1
} else if (keystate==3 && type==3) {
print grrcnt
if (grrcnt>-1) { printf("Graphing %s\n",printlist.object(grrcnt).var)
graphItem.erase_all()
rv(attrnum,grrcnt)
graphItem.exec_menu("View = plot")
}
graphItem.size(panobj.size[0],panobj.size[1],panobj.size[2],panobj.size[3])
} else if (keystate==2 && type==2) { grrcnt=-1
} else if (keystate==2 && type==1) {
x+=1 // slow it down five-fold
if (x>5) { grrcnt=(grrcnt+1)%printlist.count
printf("%d: %s\n",grrcnt,printlist.object(grrcnt).var)
x=0
}
} else if (keystate==0 && type==2) { x=x0 y=y0 } else if (keystate==0 && type==3) {
graphItem.size(x,x0,y,y0) // resize to chosen square
}
}
//* chrange() changes range for a set of graphs (called from attrpanl)
luprd=0
proc chrange () { local cnt, flag, ii, sz1, sz2, sz3, sz4
if (numarg()==2) { flag = $2 } else { flag = -1 }
panobj = panobjl.object($1)
cnt = panobj.glist.count()
for (ii=cnt-1;ii>=0;ii=ii-1) if (panobj.glist.object(ii).view_count() == 0) panobj.glist.remove(ii)
cnt = panobj.glist.count() // check again after removing any with no views
if (cnt==0) { for ii=0,3 panobj.size[ii]=0 return }
// flag -1 means set everything from the first graph
if (flag==-1) for ii=0,3 panobj.size[ii] = panobj.glist.object(0).size(ii+1)
if (flag==-2) for ii=0+luprd,1+luprd panobj.size[ii] += panobj.shift // shift right or left
if (flag==5) { panobj.size[0]=0 panobj.size[1]=tstop } // just set x
// for each of the graphs
for ltr(XO,panobj.glist) {
sz1=XO.size(1) sz2=XO.size(2) sz3=XO.size(3) sz4=XO.size(4)
if (flag==0) XO.size(panobj.size[0],sz2,sz3,sz4)
if (flag==1) XO.size(sz1,panobj.size[1],sz3,sz4)
if (flag==2) XO.size(sz1,sz2,panobj.size[2],sz4)
if (flag==3) XO.size(sz1,sz2,sz3,panobj.size[3])
if (flag==-1 || flag==4) XO.size(panobj.size[0],panobj.size[1],panobj.size[2],panobj.size[3])
if ((flag==-2 && !luprd) || flag==5) XO.size(panobj.size[0],panobj.size[1],sz3,sz4)
if (flag==-2 && luprd) XO.size(sz1,sz2,panobj.size[2],panobj.size[3])
}
for ii=0,3 if (panobj.size[ii]==0) panobj.size[ii]=panobj.glist.object(0).size(ii+1)
}
//* rtvec() reads tvec if it exists, returns -1 if it doesn't
// rtvec(attrnum)
func rtvec () { local attrnum,inx,inx2
attrnum = $1
panobj = panobjl.object(attrnum)
if (panobj.tloc > 0) {
tmpfile.seek(panobj.tloc)
panobj.tvec.vread(tmpfile)
return 1
} else {
return 0
}
}
//* rv() reads line of vector file into IV graph via vector
// rv(attrnum,llist_ind1[,llist_ind2])
func round () { if ($1>0) return int($1+0.5) else return int($1-0.5) } // round off to nearest integer
// rvaltdisp(tvec,vec,name)
func rvaltdisp () { return 0 } // if returns 1 means there is an alternate display for rv
proc rv () { local attrnum,inx,inx2
// open the file and go to correct position
if (numarg() == 0) { print "rv(attrnum,ind1,ind2) reads into vrtmp bzw vec" return }
attrnum = $1
inx = $2
if (panobj.printStep>0 && numarg() > 2) { inx2 = $3 } else { inx2 = -1 }
if (attrnum==0) { gv(inx) return }
rv_readvec(attrnum,inx,vrtmp) // will set panobj
// create a new plot if necessary and set color
nvplt(vrtmp)
if (vrtmp.size==0) { // assume this is a spike train in tvec
ind.resize(panobj.tvec.size) ind.fill(0)
ind.mark(graphItem,panobj.tvec,"O",panobj.line+4,panobj.curcol)
// grrtsize()
} else if (inx2>-1) {
rv_readvec(attrnum,inx2,vec)
graphItem.size(0,vrtmp.max,0,vec.max)
if (numarg() > 3) {
vec.mark(graphItem,vrtmp,$s4,6,panobj.curcol)
} else {
vec.mark(graphItem,vrtmp,"O",6,panobj.curcol)
}
} else if (panobj.printStep<0) {
if (gvmarkflag) {
if (! rvaltdisp(panobj.tvec,vrtmp,panobj.llist.object(inx).name)) {
panobj.tvec.mark(graphItem,vrtmp,"O",4,panobj.curcol,panobj.line)
graphItem.exec_menu("View = plot")
}
} else if (numarg() >= 3) {
vrtmp.apply("round") // round off this index vector
vrtmp.mark(graphItem,panobj.tvec,"O",$3,panobj.curcol,panobj.line)
} else {
vrtmp.line(graphItem,panobj.tvec,panobj.curcol,panobj.line) }
} else {
vrtmp.line(graphItem,panobj.printStep,panobj.curcol,panobj.line) }
// graph it and label the graph
if (sfunc.substr(panobj.filename,"batch")!=-1 || \
sfunc.substr(panobj.filename,"data")==-1) {
grvecstr = panobj.filename
} else { sfunc.tail(panobj.filename,"data",grvecstr) }
sprint(grvecstr,"%s:%s",grvecstr,panobj.llist.object(inx).name)
if (panobj.super == 0 && labelm) { graphItem.label(0,0.9,grvecstr)
} else if (labelm) graphItem.label(0.5,0.9,grvecstr)
}
// rv_readvec(attrnum,index,vec)
// read vector #index from file associated with attrnum into vector vec
proc rv_readvec () { local size,attrnum,inx,ii
attrnum = $1
inx = $2
panobj = panobjl.object(attrnum)
tmpfile.getname(temp_string_)
if (strcmp(temp_string_,panobj.filename)!=0 || tmpfile.isopen()==0) {
if (! tmpfile.ropen(panobj.filename)) {
print "ERROR rv() can't read ",panobj.filename return }}
tmpfile.seek(panobj.llist.object(inx).loc)
if (panobj.bytes) {
if (panobj.printStep==-2) { panobj.tvec.vread(tmpfile) }
$o3.vread(tmpfile)
if (panobj.segments>1) {
tmpvec = new Vector($o3.size)
for ii=1,panobj.segments-1 {
tmpfile.seek(panobj.llist.object(inx).loc[ii])
tmpvec.vread(tmpfile)
$o3.copy(tmpvec,$o3.size)
}
tmpvec = nil
}
} else {
tmpfile.scanstr(temp_string_) // get rid of '//'
size = tmpfile.scanvar()
tmpfile.scanvar() // get rid of the seek number
$o3.scanf(tmpfile,size)
}
}
//* read vector iterator rvtr
// usage 'for rvtr(vec,#) XO.vec.printf' where # is attrpanl#
// not debugged for presence of tvec in cvode
iterator rvtr() { local i
if (numarg()==3) {$&3=0} else {i1 = 0}
attrnum=$2
panobj=panobjl.object(attrnum)
for i = 0, panobj.entries - 1 {
rv_readvec(attrnum,i,$o1)
iterator_statement
if (numarg()==3) { $&3+=1 } else { i1+=1 }
}
}
//* rvec(attrnum,num[,vec]) writes to vec, or contents of rvvec_name or
// to vector of same name if rvvec_name is empty
proc rvec () { local flag,ln,on
flag=0 ln=$1
if (sfunc.len(rvvec_name)==0) flag=1
if (numarg()<2) on=hoc_ac_ else on=$2
if (numarg()>2) sprint(rvvec_name,"%s",$o3)
if (sfunc.len(rvvec_name)==0) rvvec_name=panobjl.object(ln).llist.object(on).name
printf("Copying %s to %s\n",panobjl.object(ln).llist.object(on).name,rvvec_name)
sprint(temp_string_,"rv_readvec(%d,%d,%s)",ln,on,rvvec_name)
if (flag) rvvec_name="" // clear it again
if (! execute1(temp_string_)) print "ERROR: Declare target as a vector"
}
//* rvl() reads line of vector file into IV graph via vector
// rvl(attrnum,name,pos[,pos2,pos3,...])
proc rvl () { local i
// open the file and go to correct position
panobj=panobjl.object($1)
tmpfile.getname(temp_string_)
if (strcmp(temp_string_,panobj.filename)!=0 || tmpfile.isopen()==0) {
tmpfile.ropen(panobj.filename) } // only open if necessary
if (tmpfile.isopen==0) { printf("ERROR: %s not found.\n",panobj.filename)
return }
if (numarg() == 3) {
tmpfile.seek($3)
tmpfile.gets(temp_string_) // throw away line
vrtmp.vread(tmpfile)
} else {
tmpvec = new Vector()
for i=3,numarg() {
tmpfile.seek($i)
tmpvec.vread(tmpfile)
vrtmp.copy(tmpvec,vrtmp.size)
}
}
tmpvec = nil
nvplt(vrtmp)
vrtmp.line(graphItem,panobj.printStep,panobj.curcol,panobj.line)
// graph it and label the graph
if (sfunc.substr(panobj.filename,"batch")!=-1) { grvecstr = panobj.filename
} else { sfunc.tail(panobj.filename,"data",grvecstr) }
sprint(grvecstr,"%s:%s",grvecstr,$s2)
if (panobj.super==0 && labelm) { graphItem.label(0,0.9,grvecstr)
} else if (labelm) graphItem.label(grvecstr)
}
//* read_file(file,cols[,length]): read multicolumn file
// see /u/billl/nrniv/jun/tidata/proc.hoc for improved version
func read_file() { local ii,cols,pt,length
if (numarg()==0) { print "\tread_file(\"file\",cols)"
print "\t(must set tstop and printStep.)"
return 0
}
panobjl.object(0).printStep = use_lvardt_ = using_cvode_ = 0
print "WARNING: Turning off cvode."
if (numarg()==3) { length = $3 } else { length=tstop/printStep }
cols = $2
if (! tmpfile.ropen($s1)) { printf("\tERROR: can't open file \"%s\"\n",$s1) return 0}
printlist.remove_all()
tmpfile.scanstr(temp_string_) pt = 0
// skip over a comment line; note that this will skip extra line if comment line is
// just one word long
while (sfunc.head(temp_string_,"[^-+0-9.e]",temp_string2_) != -1) {
tmpfile.gets(temp_string_) // first word in line was not a number so next line
pt = tmpfile.tell() // location at next line
tmpfile.scanstr(temp_string_) // get first word here
print temp_string2_
}
for ii=1,cols { // pick up all of the columns
tmpfile.seek(pt)
vrtmp.scanf(tmpfile,length,ii,cols)
new_printlist_item("col",ii,vrtmp)
}
return 1
}
//* read_rfile(file): read multirow file
// use col2row to transpose columnar file first
proc read_rfile() { local num
if (numarg()==0) { print "\tread_rfile(\"file\")" return }
if (! tmpfile.ropen($s1)) { printf("\tERROR: can't open file \"%s\"\n",$s1) return}
printlist.remove_all()
while (tmpfile.scanstr(temp_string_) != -1) { // read lines
num = tmpfile.scanvar() // pick up number of items in col
vrtmp.scanf(tmpfile,num)
new_printlist_item(temp_string_,vrtmp)
}
}
// restore_plist() restores the plist from a file in an attrnum
proc restore_plist () { local cnt,ii,attrnum,savlvar
printlist.remove_all
attrnum = $1
panobj=panobjl.object(attrnum)
panobjl.object(0).printStep=panobj.printStep
if (panobj.printStep == -2) use_lvardt_=1 else use_lvardt=0
cnt = panobj.llist.count()
for ii=0,cnt-1 {
vite = new vitem(panobj.llist.object(ii).name,0)
rv_readvec(attrnum,ii,vite.vec)
if (use_lvardt_) vite.tvec.copy(panobj.tvec)
printlist.append(vite)
vite=nil
}
if (use_lvardt_) tstop=panobj.tvec.max
}
//* sgv() print out spikes from IF recordings like spkt()
proc sgv () { local cl
if (numarg()==1) cl=$1 else cl=1
sgv1()
nvplt(ind)
panobj.curcol=cl
// g.erase_all()
vec.mark(graphItem,ind,"O",panobj.line+4,panobj.curcol,4)
graphItem.size(0,ind.max+1,0,tstop)
}
proc sgv1 () {
revec(ind) revec(vec)
for ltr(XO,printlist) if (XO.vec.size==0) {
szt=XO.tvec.size
if (szt>0) {
szi=ind.size
vec.append(XO.tvec)
ind.resize(szi+szt)
ind.fill(i1,szi,szi+szt-1)
}
}
}
//* gv(vnum) graphs vector
proc gv () { local inx
ulv()
if (numarg()==0) { inx = hoc_ac_ } else { inx = $1 }
panobj = panobjl.object(0)
if (use_lvardt_) { panobj.tvec = printlist.object(inx).tvec }
XO = printlist.object(inx).vec
if (XO.size==0) { // assume that this is spk trace
if (panobj.tvec.size==0) { printf("\tNO SPIKES IN %s\n",printlist.object(inx).var)
} else {
nvplt(panobj.tvec)
ind.resize(panobj.tvec.size) ind.fill(1)
ind.mark(graphItem,panobj.tvec,"O",panobj.line+4,panobj.curcol)
// grrtsize()
}
return
} else nvplt(XO)
if (gvmarkflag) {
panobj.tvec.mark(graphItem,XO,"O",panobj.line+4,panobj.curcol)
graphItem.exec_menu("View = plot")
} else if (using_cvode_) {
XO.line(graphItem,panobj.tvec,panobj.curcol,panobj.line)
} else {
XO.line(graphItem,printStep,panobj.curcol,panobj.line)
}
if (labelm) graphItem.label(0.,0.9,printlist.object(inx).var)
}
proc gvmt () { gvmarkflag=-(gvmarkflag-1) printf("gv Mark: %d\n",gvmarkflag) }
//* dispspks() display spike times
proc dispspks () { local attrnum,n
attrnum = $1 n=0
panobj=panobjl.object(attrnum)
if (panobj.super == 1) {
graphItem = panobj.glist.object(panobj.glist.count-1)
} else {
newPlot(0,1,0,1)
panobj.glist.append(graphItem)
}
if (attrnum==0) {for ltr(XO,printlist) dispspks2(XO.var,XO.tvec,i1)
} else for ltr(XO,panobj.llist) {
rv_readvec(attrnum,i1,ind) // ind is scratch here since info in tvec
dispspks2(XO.name,panobj.tvec,i1)
}
grrtsize()
}
// $s1 name, $o2 tvec, $3 n
proc dispspks2 () { local n,col
n=$3
col = panobj.curcol
if (sfunc.substr($s1,"_spks")) {
if ($o2.size>0) {
ind.resize($o2.size) ind.fill(n)
if (sfunc.substr($s1,"NetStim")!=-1) col+=1
ind.mark(graphItem,$o2,"O",panobj.line+4,col)
}
}
}
//** grrtsize() use view=plot and then pad a little
proc grrtsize () { local h,w,frac
if (numarg()>=1) tmpobj=$o1 else tmpobj=graphItem
if (numarg()>=2) frac = $2 else frac=.05
tmpobj.exec_menu("View = plot")
tmpobj.size(&x)
w=frac*(x[1]-x[0]) h=frac*(x[3]-x[2])
x[0]-=2*w x[1]+=w x[2]-=4*h x[3]+=h // need extra padding on bottom
tmpobj.size(x[0],x[1],x[2],x[3])
}
//* gvv() like gv() but give it vector statt vnum
proc gvv () { local inx
nvplt($o1)
if (numarg()==1) {
$o1.line(graphItem,printStep,panobj.curcol,panobj.line)
} else {
$o1.line(graphItem,$o2,panobj.curcol,panobj.line)
graphItem.size($o2.min,$o2.max,$o1.min,$o1.max)
}
}
//* ge() erases IV graph
proc ge () { graphItem.erase_all() }
//* pvall() dumps all vectors to output_file
// Save logic:
// 1) Interactive mode: you're watching simulations while printing out
// data. You see something you like and save it - the runnum in the
// index file then corrsponds to the number on the data file, it is
// subsequently augmented
// 2) Batch mode: you're running very long sims and saving directly to
// vector files. You put together a simulation you want and save it
// immediately rather than waiting for the sim to return (in 1 or 2
// days). To correspond, the data file (v*) must then be numbered
// 'runnum-dec_runnum'
proc pvall () {
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum-dec_runnum)
while (tmpfile.ropen(output_file)) { runnum = runnum+1
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum-dec_runnum)
}
if (numarg()>0) { comment = $s1 // a comment
} else {
sprint(temp_string_,"%s.%02d",datestr,runnum-dec_runnum)
if (sfunc.substr(comment,temp_string_) == -1) { comment = "" } // clear comment
}
printf("Saving to %s\n",output_file)
pvplist(output_file,comment)
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum)
}
// pvplist(file,comment) print out the printlist with comment at head
proc pvother () {} // user can dump other vectors at top with prvec()
proc pvplist () { local inx
ulv()
file_with_dot($s1,temp_string_,temp_string2_) // put .filename into temp_string_
if (tmpfile.ropen(temp_string_)) { printf("WARNING: removing %s\n",temp_string_)
sprint(temp_string_,"rm %s",temp_string_) system(temp_string_) }
if (tmpfile.wopen($s1)==0) { print "Can't open ",$s1 return}
tmpfile.printf("//: %s\n",$s2) // comment
pvplist1()
if (byte_store) {tmpfile.printf("//CPU %s\n",uname)}
pvother()
pvout()
tmpfile.close()
}
proc pvplist1 () {
if (use_lvardt_) {
tmpfile.printf("//printStep -2\n")
} else if (using_cvode_) {
tmpfile.printf("//printStep -1\n")
} else {
tmpfile.printf("//printStep %g\n",printStep)
}
}
// pvnext() append another printlist set to same file
proc pvnext() { local ii
if ($1==0) {
pvall(comment)
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum-1) // decrement back to name
return
}
tmpfile.aopen(output_file)
pvout()
printf("Append to %s\n",output_file)
tmpfile.close()
}
// prout() called by pvplist() and pvnext(), actually puts out the vecs
proc pvout () {
ulv()
if (!use_lvardt_ && using_cvode_) { prvec("tvec",panobjl.object(0).tvec,tvec_bytesize) } // save precise times
for ltr(XO,printlist) { // no whitespace allowed
if (sfunc.len(XO.vec.label)>0) sprint(temp_string_,"%s__(%s)",XO.vec.label,XO.var) else {
temp_string_=XO.var }
if (byte_store) {
tmpfile.printf("//b%d %s %d %d\n",byte_store,temp_string_,XO.vec.size,tmpfile.tell())
if (use_lvardt_==1) if (eqobj(XO.tvec,nil)) {
print "ERROR: can't save under cvode_local, must recreate printlist\n"
return
} else { XO.tvec.vwrite(tmpfile,tvec_bytesize) }
XO.vec.vwrite(tmpfile,byte_store)
tmpfile.printf("\n")
} else {
tmpfile.printf("// %s %d %d\n",temp_string_,XO.vec.size,tmpfile.tell())
XO.vec.printf(tmpfile)
}
}
}
// prvec(name,vec,byte_flag[,file]) byte_flag=0 means printf
proc prvec () { local bflag
if (numarg()==0) { print "prvec(name,vec,byte_flag[,file])" return}
if (numarg()>3) { tmpfile.aopen($s4) }
bflag = $3
tmpfile.printf("//b%d %s %d %d\n",bflag,$s1,$o2.size,tmpfile.tell())
if (bflag==0) {
$o2.printf(tmpfile)
} else { $o2.vwrite(tmpfile,bflag) tmpfile.printf("\n") }
if (numarg()>3) { tmpfile.close() }
}
//* pv() dumps a single vector into output_file
proc pv () { local inx
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum-dec_runnum)
if (numarg()==0) { inx = hoc_ac_ } else { inx = $1 }
printf("Printing %s to %s\n",printlist.object(inx).var,output_file)
temp_string_ = printlist.object(inx).var
// string_dialog("Name for saved vector",temp_string_)
if (tmpfile.ropen(output_file)) { // file exists already
tmpfile.close()
tmpfile.aopen(output_file)
printf("Appending to ",output_file)
} else {
tmpfile.wopen(output_file)
tmpfile.printf("//: %s\n",comment)
pvplist1()
}
if (byte_store) {
tmpfile.printf("//b%d %s %d %d\n",byte_store,temp_string_,\
printlist.object(inx).vec.size,tmpfile.tell())
if (use_lvardt_==1) if (eqobj(printlist.object(inx).tvec,nil)) {
print "ERROR: can't save under cvode_local, must recreate printlist\n"
return
} else { printlist.object(inx).tvec.vwrite(tmpfile,tvec_bytesize) }
printlist.object(inx).vec.vwrite(tmpfile,byte_store)
tmpfile.printf("\n")
} else {
tmpfile.printf("// %s %d %d\n",temp_string_,\
printlist.object(inx).vec.size,tmpfile.tell())
printlist.object(inx).vec.printf(tmpfile)
}
tmpfile.close()
}
//* lpv() calls lpvec from printlist
proc lpv () { local inx
if (numarg()==0) { inx = hoc_ac_ } else { inx = $1 }
sprint(temp_string_,"%s.%02d:%s",datestr,runnum-dec_runnum,printlist.object(inx).var)
lpvec(temp_string_,printlist.object(inx).vec,printStep)
}
//* lpvec(title,vector,printstep) dumps a single vector onto the printer using jgraph
proc lpvec () { local inx,ii
tmpfile.wopen("lptmp")
tmpfile.printf("newgraph\nnewcurve pts\n")
for ii = 0,$o2.size-1 {
tmpfile.printf("%g ",ii*$3)
$o2.printf(tmpfile,"%g",ii,ii)
}
tmpfile.printf("marktype none\nlinetype solid\ntitle : %s\n",$s1)
tmpfile.close()
system("jgraph -P lptmp > lptmp2")
system("lpt lptmp2")
}
//* phase planes
//** gppl(n1,n2) graph phase planes from printlist
proc gppl () {
newPlot(0,1,0,1)
panobjl.object(0).glist.append(graphItem)
printlist.object($2).vec.line(graphItem,printlist.object($1).vec)
}
//* routines for printing out in sections
//** outvec_init([output_file,comment])
proc outvec_init() { local segs
if (numarg()>0) { output_file = $s1 } else {
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum-dec_runnum)
while (tmpfile.ropen(output_file)) { runnum = runnum+1 // don't allow an overwrite
sprint(output_file,"%s/v%s.%02d",ddir,datestr,runnum-dec_runnum) }
}
if (numarg()>1) { comment = $s2 }
print "\nOutput to ",output_file
if (print_flag) { print "WARNING: print_flag=1 --> 0\n"
print_flag = 0 }
if (outvecint==0 || outvecint>tstop) {
printf("WARNING: outvecint being set to tstop\n")
outvecint = tstop }
outvect = outvecint
segs = int(tstop/outvecint)
if (tstop/outvecint > segs) { segs=segs+1 }
tmpfile.wopen(output_file)
if (strcmp(comment,"")!=0) { tmpfile.printf("//: %s\n",comment) }
tmpfile.printf("//printStep %g\n",printStep)
tmpfile.printf("//MULTI %d %d\n",printlist.count,segs)
tmpfile.close()
}
//** outvecs() : print out the vectors and reset them for recording
proc outvecs () { local ii
if (t<outvect || outvecint == 0) { return }
tmpfile.aopen(output_file)
for ii=0,printlist.count-1 {
tmpfile.printf("//b%d %s %d %d\n",byte_store,printlist.object(ii).var,t-outvecint,tmpfile.tell())
printlist.object(ii).vec.vwrite(tmpfile,byte_store)
tmpfile.printf("\n")
printlist.object(ii).vec.play_remove()
sprint(temp_string_,"printlist.object(%d).vec.record(&%s,%g)",\
ii,printlist.object(ii).var,printStep)
execute(temp_string_)
}
tmpfile.close
outvect = outvect+outvecint
}
//** outvec_finish () : put out the last section if needed, update the output_file name
proc outvec_finish() {
if (t > outvect-outvecint+2*dt) {
tmpfile.aopen(output_file)
for ii=0,printlist.count-1 {
tmpfile.printf("//b%d %s %d %d\n",byte_store,printlist.object(ii).var,t-outvecint,tmpfile.tell())
printlist.object(ii).vec.vwrite(tmpfile,byte_store)
tmpfile.printf("\n")
}
tmpfile.close()
}
}
//* utility programs (not all used)
gnum=-1
proc nvplt () { local xs,ys,flag
if (panobj.super == 0) flag=1 else {
if (gnum>-1) {
sprint(tstr,"x=Graph[%d].view_count",gnum)
if (execute1(tstr,0)) if (x>0) { // use Graph[gnum] if exists and has views
graphItem=Graph[gnum] flag=0
} // else use graphItem if has views
} else if (isobj(graphItem,"Graph")) if (graphItem.view_count() > 0) {
flag=0
} else { flag=1 } // else need new graph
}
if (flag) {
if (panobj.printStep==0) { panobj.printStep=printStep }
if (panobj.size[1] != 0) { // xmax is set
newPlot(panobj.size[0],panobj.size[1],panobj.size[2],panobj.size[3])
} else if (panobj.printStep<0) {
newPlot(0,panobj.tvec.max,$o1.min,$o1.max)
} else {
newPlot(0,$o1.size()*panobj.printStep,$o1.min,$o1.max)
}
panobj.glist.append(graphItem)
} else if (gveraseflag) graphItem.erase_all
if (panobj.color == -1) {
panobj.curcol += 1
if (panobj.curcol == 0 || panobj.curcol>7) panobj.curcol = 1
} else panobj.curcol = panobj.color
graphItem.color(panobj.curcol)
g=graphItem
}
proc gs () { g=Graph[$1] graphItem=g }
proc gg () { local ii
ii=0
if (numarg()>=1) if (argtype(1)==0) ii=$1
g[ii] = new Graph()
graphItem=g[ii]
graphList[0].append(g[ii])
if (numarg()==1) if (argtype(1)==1) $o1.line(g[ii],1)
if (numarg()==2) if (argtype(2)==1) $o2.line(g[ii],$o1)
if (numarg()==2) if (argtype(1)==0) $o2.line(g[ii],1)
if (numarg()==3) if (argtype(1)==0) $o3.line(g[ii],$o2)
}
//** remove_spaces(string,scratch) removes spaces and splits on '/'
// ie remove_spaces(temp_string_,temp_string2_)
proc remove_spaces () {
$s2="" // clear it out
while (sfunc.substr($s1," ") != -1) { // still have spaces
sfunc.tail($s1," ",$s2)
sfunc.head($s1," ",$s1)
sprint($s1,"%s%s",$s1,$s2)
}
if (sfunc.substr($s1,"/") != -1) { // split it up
sfunc.tail($s1,"/",$s2)
sfunc.head($s1,"/",$s1)
}
}
//** dirname(full,path) filname(full,file) splits up path/file
// eg filname("/home/billl/nrniv/thal/params.hoc",temp_string_)
// temp_string_ => params.hoc
proc dirname () { sfunc.head($s1,"[^/]+$",$s2) }
proc filname () { local ii,cnt
cnt = 0
$s2=$s1 while (sfunc.tail($s2,"/",$s2) != -1) cnt += 1
$s2=$s1 for ii=1,cnt sfunc.tail($s2,"/",$s2)
}
//** file_with_dot(filename,result,scratch): put .filename into result
proc file_with_dot() {
if (sfunc.substr($s1,"/") == -1) {
sprint($s2,".%s",$s1)
} else {
sfunc.tail($s1,".*/",$s3)
sfunc.head($s1,"/[^/]+$",$s2)
sprint($s2,"%s/.%s",$s2,$s3)
}
}
//** mkmenu(title,action,proc) makes a menu from printlist
proc mkmenu () { local ii
xmenu($s1)
for ii=0,printlist.count-1 {
sprint(temp_string_,"%s %s",$s2,printlist.object(ii).var)
sprint(temp_string2_,"%s(%d)",$s3,ii)
xbutton(temp_string_,temp_string2_)
}
sprint(temp_string_,"mkpanel(\"%s\",\"%s\",\"%s\")",$s1,$s2,$s3)
xbutton("Leave up",temp_string_)
xmenu()
}
//** mkpanel(title,action,proc) makes a panel from printlist
proc mkpanel () { local ii
sprint(temp_string_,"%s:%s",simname,$s1)
xpanel(temp_string_)
for ii=0,printlist.count-1 {
sprint(temp_string_,"%s %s",$s2,printlist.object(ii).var)
sprint(temp_string2_,"%s(%d)",$s3,ii)
xbutton(temp_string_,temp_string2_)
}
xpanel()
}
//** drline(x0,y0,x1,y1,OPT graph)
proc drline () {
if (numarg()==0) { print "drline(x0,y0,x1,y1,OPT graph)"
return }
if (numarg()>4) { graphItem = $o5 }
graphItem.beginline(panobj.color,panobj.line)
graphItem.line($1,$2)
graphItem.line($3,$4)
graphItem.flush()
}
//** seevec(varname,min,max) -- uses a stringmatch to find a particular vector
proc shprl () {
if (numarg()==1) {
print panobjl.object($1).filename
for ltr(XO,panobjl.object($1).llist) print i1," ",XO.name
} else for ltr(XO,printlist) print i1," ",XO.var,XO.vec,XO.tvec
}
proc remprl () { local flag
flag=0
if (numarg()==2) flag=1 else print "LISTING ONLY; rerun with 2 args to remove"
for (ii=printlist.count-1;ii>=0;ii-=1) {
XO=printlist.object(ii)
if (strm(XO.var,$s1)) if (flag) printlist.remove(ii) else print XO.var
}
}
proc seevec () { local min,max,flag
if (numarg()==3) { min=$2 max=$3 flag=1} else flag=0
if (numarg()==2) flag=-1
for ltr(XO,printlist) {
if (sfunc.substr(XO.var,$s1)>-1) {
printf("%s: printlist.object(%d).vec\n",XO.var,i1)
if (flag==0) XO.vec.printf
if (flag==-1) $o2 = XO.vec
if (flag==1) {
vec.resize(max-min+1)
vec.copy(XO.vec,min,max)
vec.printf
}
flag = -2
break
}
}
if (flag!=-2) printf("%s not found.\n",$s1)
}
//** file_len(fname): retrieve file length; uses global x
func file_len () {
sprint(temp_string_,"wc %s",$s1)
sassign(temp_string_,temp_string_)
sscanf(temp_string_,"%d",&x)
return x
}
//** count_substr(str,sub): count occurences of substring in str
func count_substr () { local cnt
cnt = 0
while (sfunc.tail($s1,$s2,$s1) != -1) { cnt += 1}
return cnt
}
// for ltr(XO,panobj.glist) { print XO,XO.view_count }
//** xgetargs(panel_name,command,arg1[,arg2,...],defaults)
// eg xgetargs("Random session","newrand","# of patts","patt size ","overlap ","5,33,7")
objref argvl,argv
argvl = new List()
strdef mesg
proc xgetargs () { local i,args
args=numarg()-3 i=numarg()
argv = new Vector(args)
argvl.append(argv)
argv.resize(0)
sprint(temp_string_,"argv.append(%s)",$si)
execute(temp_string_)
if (argv.size!=args) argv.resize(args)
xpanel($s1)
mesg="" xvarlabel(mesg)
for i=3,numarg()-1 {
sprint(temp_string_,"%s.x[%d]",argv,i-3)
xvalue($si,temp_string_)
}
sprint(temp_string_,"xgetexec(\"%s\",%d,%s)",$s2,args,argv)
xbutton($s1,temp_string_)
xpanel()
}
proc xgetexec () { local i,args
args = $2
if ($o3.size!=args) { mesg="Error-close & relaunch panel" return }
sprint(temp_string_,"%s(",$s1)
for i=0,args-2 sprint(temp_string_,"%s%g,",temp_string_,$o3.x[i])
sprint(temp_string_,"%s%g)",temp_string_,$o3.x[i])
// print temp_string_
execute(temp_string_)
}
//** procbutt() put up a single proc in a button
proc procbutt () {
xpanel($s1)
xbutton($s1,$s1)
xpanel(500,500)
}
proc prlclr () {
for ltr(XO,printlist) {
cvode.record_remove(XO.vec)
}
printlist.remove_all
}
// op([obj,list],num) -- create object pointer
proc op () {
if (numarg()==1) { XO=tmpobj.object($1) } else\
if (numarg()==2) { tmpobj=$o1 XO=tmpobj.object($2) } else\
if (numarg()==3) { tmpobj=$o2 $o1=tmpobj.object($3) }
}
// END /usr/site/nrniv/local/hoc/grvec.hoc
//================================================================
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/syncode.hoc
// $Id: syncode.hoc,v 1.101 2003/07/28 19:09:39 billl Exp $
proc syncode () {}
//* setup
objref nco, ncl, cells[10] // enough room for 10 cell types
objref CTYP[1],STYP[1] // for err messages involving cell and synapse types
ncl = new List()
strdef syn1,syn2
thresh = -20
// for ltr(XO,cvode.netconlist("", "", "")) print XO.precell,XO.postcell,XO.syn
//* synapse linking
//** geolink(s1,s2,s3) s1 for presyns and s2 for postsyns, connect s3's
// only checks for INTF as a possible pre/post point process
// connects a layer to another assuming 1 dim netgeom
proc geolink() { local i,ii,a,sav,nowrap,noself
if (numarg()==0) { print "\tgeolink(s1,s2,s3,DEFCON)"
print " make connections from s1 to s2 connecting onto s3 type PPs."
print " DEFCON struct defines connection"
return
}
// default to yes wrap; yes within-column connect unless $s1==$s2
nowrap = !$o4.wrap noself=!$o4.self
if (strcmp($s1,$s2)==0) $o4.self=0
tmpobj=new List($s1)
// object containing a receive/event PP need fflag=1 and intf as name of PP
if (tmpobj.object(0).fflag) { // presynaptic object flag
sprint(temp_string_,"ncl.append(new NetCon(XO.intf, YO.%s))",$s3)
} else {
sprint(temp_string_,"XO.soma ncl.append(new NetCon(&v(.5), YO.%s))",$s3)
}
for ltr (XO,tmpobj,&y) { // presyn list
$o4.grot(y)
for lvtr (YO,&x,new List($s2),$o4.scr) { // postsyn list and vector
if (x==1) { // connect
print "connecting ",XO," to ",YO
execute(temp_string_)
}
}
}
XO=nil YO=nil
}
//** glink() same as geolink but takes lists statt strings
proc glink() { local i,ii,a,sav,nowrap,noself
if (numarg()==0) { print "\tgeolink(l1,l2,DEFCON)"
print " make connections from items in l1 to items in l2."
print " DEFCON struct defines connection"
return
}
// default to yes wrap; yes within-column connect unless $s1==$s2
nowrap = !$o4.wrap noself=!$o4.self
// object containing a receive/event PP need fflag=1 and intf as name of PP
if ($o1.object(0).fflag) { // presynaptic object flag
sprint(temp_string_,"ncl.append(new NetCon(XO.intf, YO.%s))",$s3)
} else {
sprint(temp_string_,"XO.soma ncl.append(new NetCon(&v(.5), YO.%s))",$s3)
}
for ltr (XO,$o1,&y) { // presyn list
$o4.grot(y)
for lvtr (YO,&x,$o2,$o4.scr) { // postsyn list and vector
if (x==1) { // connect
// print "connecting ",XO," to ",YO
execute(temp_string_)
}
}
}
XO=nil YO=nil
}
//** synlink(s1,s2,s3,[gmax,del]) s1 for presyns and s2 for postsyns, connect s3's
// eg synlink("PYR","INH","AMPA")
// provides full connectivity
proc synlink() { local gm,dl
if (numarg()==0) { print "\tsynlink(s1,s2,s3)"
print " make connections from all of type s1 to one of type s2 "
print " only connecting onto s3 type PPs."
print " Matching done with regexps."
return
}
if (numarg()==5) { gm=$4 dl=$5 } else { gm=0 dl=1 }
tmplist = new List($s3) // list of postsyn point processes
for ltr (XO,new List($s1)) { // presyn list
for ltr (YO,tmplist) {
if (pp_loc(YO,$s2,syn2)) {
sfunc.head(syn2,"\\.",syn2)
sprint(syn1,"%s",XO)
if (strcmp(syn1,syn2)!=0) { // don't allow self connects
print "connecting ",XO," to ",syn2
XO.soma ncl.append(new NetCon(&v(.5), YO, thresh, gm, dl))
}
}
}
}
}
//** synconn(l1,s2,s3,%div) l1 list of presyns and s2 for postsyns, connect s3's with given density
// eg synconn(PYRi,PYRi,AMPAi,pmat[PYR][PYR])
// provides % connectivity based on %div==%conv
objref convec,convec1,convec2 // vectors to count how much div is from each nrn
convec = new Vector(100)
convec1 = convec.c // a scratch vector
convec2 = convec.c // copy of convec used temporarily to blot out self-connect and redundent connects
proc synconn () { local pdiv,con,div,ii,jj,pre,prn,post,pon,sy,targ
if (numarg()==0) { print "\tsynconn(pre,post,mech,div)" return }
pre=$1 post=$2
if (numarg()==3) { sy=0 pdiv=$3 } else { sy=$4 pdiv=$3 }
prn = cells[$1].count // number of possible presyn sources
pon = cells[$2].count // number of possible postyn targets
div = int(pdiv*pon) // # out from each
con = int(pdiv*prn+1) // # into each; leave a little extra room
if (pdiv==1) con=-1 // flag for full connectivity
printf("\tdiv=%d,conv=%d\n",div,con)
convec.resize(pon) convec.fill(0) // counter for convergence
for ii=0,prn-1 { // sources
convec2.copy(convec) convec2.x[ii]=1e10 // block self-connect
for jj=1,div {
targ = pickpost(pon,con) // pick desired target
// printf("SRC: %s -> TRG: %s (%s)\n",cells[pre].object(ii),cells[post].object(targ),cells[post].object(targ).syns[sy])
cells[pre].object(ii).conn(cells[post].object(targ).syns[sy])
}
}
}
//*** pickpost() tries to reduce divergence variance
// pickpost(postlist,maxcon,YO)
// maxcon == -1 means to ignore convergence
// MUST do convec.resize() and convec.fill(0) before using
func pickpost () { local ran, maxcon, maxpo, min, indx
maxcon = $2 // max convergence to be allowed
maxpo = $1 // number of postsyn choices
if (maxcon == -1) $o3 = $o1.object(rdm.disunif(0,maxpo)) // just choose one randomly
min = convec2.min // convec should start all 0's
if (min >= maxcon) { // all full up
printf("Pickpost full WARNING: %d %d\n",min,maxdiv) vlk(convec2) }
convec1.indvwhere(convec2,"==",min) // look for all the smallest to fill up first
inx = convec1.x[rdm.discunif(0,convec1.size-1)]
convec.x[inx]+=1
convec2.x[inx]=1e10 // block from reconnecting here
return inx
}
proc syn1to1 () { local pre,post,syn
pre=$1 post=$2
if (numarg()==3) syn=$3 else syn=0
if (cells[pre].count !=cells[post].count) {
printf("\tERROR: 1-to-1 connectivity requires same # of %s (=%d) and %s (=%d).\n",\
CTYP[pre].s,cells[pre].count,CTYP[post].s,cells[post].count) return }
for ltr2(XO,YO,cells[pre],cells[post]) {
printf("SRC: %s -> TRG: %s (%s)\n",XO,YO,YO.syns(syn))
XO.conn(YO.syns[syn])
}
}
//** simple netconnect routines: netconn(), netgen()
proc netconn () { local pre,post,syn,pri,poi
pre=$1 post=$2
if (numarg()==5) { syn=$3 pri=$4 poi=$5 } else { syn=0 pri=$3 poi=$4 }
cells[pre].object(pri).conn(cells[post].object(poi).syns[syn])
}
proc netgen () { ncl.append(new NetCon($o1, $o2)) }
//** syncopy() copies from one set of syns to another for colocalization
proc syncopy () {
if (numarg()==0) { printf("syncopy(to_type,[]): copy from type, post/type, pre/post/type\n") return }
sprint(temp_string_,"XO.precell.soma ncl.append(new NetCon(&v(.5),XO.postcell.%s",$s1)
if (numarg()==1) tmplist = cvode.netconlist("", "" , $s2)
if (numarg()==2) tmplist = cvode.netconlist("", $s2, $s3)
if (numarg()==3) tmplist = cvode.netconlist($s2, $s3, $s4)
for ltr(XO,tmplist) execute(temp_string_)
}
//* synapse setting
//** scale gmax
proc synscgmax () {
for ltr(XO,cvode.netconlist("" , "", $s1)) { XO.weight *= $2 }
}
//** set/get gmax
proc synsetgmax () {
if (numarg()==0) { print "synsetgmax(pre,post,type,wt)"
} else if (numarg()==2) {for ltr(XO,cvode.netconlist("" , "", $s1)) XO.weight=$2
} else if (numarg()==3) {for ltr(XO,cvode.netconlist("" , $s1, $s2)) XO.weight=$3
} else if (numarg()==4) {for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) XO.weight=$4
} else { print "ERROR: too many args" }
if (i1==0) printf("WARNING: nothing set in synsetgmax(%s ...)\n",$s1)
}
// synnormgmax() -- like synsetgmax except normalizes the wt by convergence
proc synnormgmax () {
for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) {
XO.weight=$4/cvode.netconlist($s1,XO.postcell,$s3).count
}
}
proc syngetgmax () {
if (numarg()==1) {
if (strcmp($s1,"help")==0) { printf("type,post/type,pre/post/type\n") } else {
for ltr(XO,cvode.netconlist("" , "", $s1)) printf("%g ",XO.weight) }
} else if (numarg()==2) {for ltr(XO,cvode.netconlist("" , $s1, $s2)) printf("%g ",XO.weight)
} else if (numarg()==3) {for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) printf("%g ",XO.weight)
} else for ltr(XO,cvode.netconlist("","","")) printf("%g ",XO.weight)
print ""
}
//** set/get delay
proc synsetdel () {
if (numarg()==2) {for ltr(XO,cvode.netconlist("" , "", $s1)) XO.delay=$2
} else if (numarg()==3) {for ltr(XO,cvode.netconlist("" , $s1, $s2)) XO.delay=$3
} else if (numarg()==4) {for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) XO.delay=$4
} else { print "ERROR: too many args" }
if (i1==0) printf("WARNING: nothing set in synsetdel(%s ...)\n",$s1)
}
proc syngetdel () {
if (numarg()==1) {for ltr(XO,cvode.netconlist("" , "", $s1)) printf("%g ",XO.delay)
} else if (numarg()==2) {for ltr(XO,cvode.netconlist("" , $s1, $s2)) printf("%g ",XO.delay)
} else if (numarg()==3) {for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) printf("%g ",XO.delay)
} else for ltr(XO,cvode.netconlist("","","")) printf("%g ",XO.delay)
print ""
}
//** set/get thresh
proc synsetthr () {
if (numarg()==1) {for ltr(XO,cvode.netconlist("" , "", "")) XO.threshold=$1
} else if (numarg()==2) {for ltr(XO,cvode.netconlist($s1 , "", "")) XO.threshold=$2
} else if (numarg()==3) {for ltr(XO,cvode.netconlist($s1, "", $s2)) XO.threshold=$3
} else if (numarg()==4) {for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) XO.threshold=$4
} else { print "ERROR: too many args" }
if (i1==0) printf("WARNING: nothing set in synsetthr(%s ...)\n",$s1)
}
proc syngetthr () {
if (numarg()==1) {for ltr(XO,cvode.netconlist($s1 , "", "")) printf("%g ",XO.threshold)
} else if (numarg()==2) {for ltr(XO,cvode.netconlist($s1, "", $s2)) printf("%g ",XO.threshold)
} else if (numarg()==3) {for ltr(XO,cvode.netconlist($s1 , $s2, $s3)) printf("%g ",XO.threshold)
} else for ltr(XO,cvode.netconlist("","","")) printf("%g ",XO.threshold)
print ""
}
//** synremove: remove post, pre/post, pre/post/type; synshow
proc synremove () {
if (numarg()==0) { printf("synremove: remove post, pre/post, pre/post/type\n") return }
if (numarg()==1) tmplist = cvode.netconlist("", $s1 , "")
if (numarg()==2) tmplist = cvode.netconlist("", $s1, $s2)
if (numarg()==3) tmplist = cvode.netconlist($s1 , $s2, $s3)
if (tmplist.count>0) for ltr(XO,tmplist) ncl.remove(ncl.index(XO))
tmplist = nil // need to remove these references too
if (numarg()==1) tmplist = cvode.netconlist("", $s1 , "")
if (numarg()==2) tmplist = cvode.netconlist("", $s1, $s2)
if (numarg()==3) tmplist = cvode.netconlist($s1 , $s2, $s3)
if (tmplist.count>0) for ltr(XO,tmplist) printf("ERROR: %s removed from ncl but still exists\n",XO)
tmplist = nil
}
proc synshow () {
sprint(temp_string_,"x=XO.%s",$s2)
for ltr(XO,cvode.netconlist("" , "", $s1)) { execute(temp_string_) printf("%g ",x) }
print ""
}
//* informational procs
//** proc print_pp_location(PP), from doc/html/refman/nocmodl.html
proc print_pp_location() { local x //arg1 must be a point process
x = $o1.get_loc()
sectionname(section)
printf("%s located at %s(%g)\n", $o1, section, x)
pop_section()
}
//** pp_loc(PP,LOC,SCRATCH) returns true if point process PP is located in LOC (regexp match)
func pp_loc () { local x //arg1 must be a point process
x = 0
$o1.get_loc()
if (numarg()==3) { sectionname($s3) }
ifsec $s2 { x = 1 }
pop_section()
return x
}
//* for use with INTF
iterator divr () { local ii
for ii=0,ncl.count-1 {
XO=ncl.object(ii)
if (object_id(sfunc.obj(XO.pre.p))==object_id(cells[$1].object($2))) {
iterator_statement
}
}
}
iterator conr () { local ii
for ii=0,ncl.count-1 {
XO=ncl.object(ii)
if (object_id(sfunc.obj(XO.syn.p))==object_id(cells[$1].object($2))) {
iterator_statement
}
}
}
//** ndivo, ncono, sdivo, scono: objects; ndivs, ncons, sdivs, scons: strings
// eg for syt("ns[0]","ns[1]") print XO,YO,nco
iterator syt () { local num,err
err=0
canobj($o1,"XO") canobj($o2,"YO") // canobj -- canonical object
if ((num=cvode.netconlist(XO,"",YO).count)!=1) {
printf("syt() ERROR num==%d (%s,%s)\n",num,XO,YO) err=1 }
if (!err) {
nco=cvode.netconlist(XO,"",YO).object(0)
iterator_statement
}
XO=nil YO=nil nco=nil
}
// nca makes list backwards -- syn, then postcell, then precell
iterator nca () { local ii
tmplist.remove_all
if (numarg()==1) { cvode.netconlist("", "", $s1,tmplist)}
if (numarg()==2) { cvode.netconlist("", $s2, $s1,tmplist)}
if (numarg()==3) { cvode.netconlist($s3, $s2, $s1,tmplist)}
for ii=0,tmplist.count-1 {
XO=tmplist.object(ii)
iterator_statement
}
}
func wtvec () {
revec(vec)
for nca($s1) vec.append(XO.weight)
vlk(vec)
return vec.size
}
func dlyvec () {
revec(vec)
for nca($s1) vec.append(XO.delay)
vlk(vec)
return vec.size
}
iterator pri () { local ii
tmplist.remove_all
for ii=0,cvode.netconlist("", $s1, "").count-1 {
nco=cvode.netconlist("", $s1, "").object(ii)
iterator_statement
}
}
iterator poi () { local ii
for ii=0,cvode.netconlist($s1,"","").count-1 {
nco=cvode.netconlist($s1,"","").object(ii)
iterator_statement
}
}
iterator syi () { local ii
for ii=0,cvode.netconlist("","",$s1).count-1 {
nco=cvode.netconlist("","",$s1).object(ii)
iterator_statement
}
}
proc sdivo () {for ltr(XO,cvode.netconlist($o1, "", "")) prsxo() }
func ndivo () { return cvode.netconlist($o1, "", "").count }
func ncono () { return cvode.netconlist("", $o1, "").count }
proc scono () {for ltr(XO,cvode.netconlist("", $o1, "")) prsxo() }
func ndivs () { return cvode.netconlist($s1, "", "").count }
func ncons () { return cvode.netconlist("", $s1, "").count }
proc sdivs () { for ltr(XO,cvode.netconlist($s1, "", "")) prsxo() }
proc scons () {
if (numarg()==0) for ltr(XO,cvode.netconlist("", "", "")) prsxo()
if (numarg()==1) for ltr(XO,cvode.netconlist("", $s1, "")) prsxo()
if (numarg()==2) for ltr(XO,cvode.netconlist("", $s1, $s2)) prsxo()
if (numarg()==3) for ltr(XO,cvode.netconlist($s1, $s2,$s3)) prsxo()
}
// print pre,post,syntype,threshold,weight,delay
proc prsxo () {
if (isobj(XO.precell,"NULLobject")) {
printf("%s:%s->%s (%s) (t%g,w%g,d%g)\n",XO,XO.pre,XO.postcell,XO.syn,XO.threshold,XO.weight,XO.delay)
} else {
printf("%s:%s->%s (%s) (t%g,w%g,d%g)\n",XO,XO.precell,XO.postcell,XO.syn,XO.threshold,XO.weight,XO.delay)
}
}
//* grvec addendum
//* new_printlist_nc(name[,n]) adds a netcon presynaptic site to printlist.object(n)
func new_printlist_nc () { local dur,pln,ix,index
ulv()
panobj = panobjl.object(0)
grvecstr = $s1
if (numarg()==2) ix=$2 else ix=0
if (printlist.count-1<ix) {
if (ix-printlist.count==0) {
print "Adding spk entry to printlist for netcons"
printlist.append(new vitem("spks",0))
} else {
printf("new_printlist_nc ERR: printlist.object(%d) doesn't exist\n",ix) return -1 }
}
if (!use_lvardt_ && !using_cvode_) {
printf("new_printlist_nc ERR: can't record netcon without cvode.\n") return -1 }
// printlist.append(new vitem(grvecstr,0,temp_string2_))
YO=printlist.object(ix)
var2obj(grvecstr) // sets XO
if (cvode.netconlist(XO, "", "").count==0) {
printf("WARNING (new_printlist_nc) creating NetCon for %s\n",grvecstr)
tmpobj=new NetCon(XO, nil)
tmpobj.record(YO.tvec,YO.vec)
ncl.append(tmpobj)
} else {
tmpobj=cvode.netconlist(XO, "", "").object(0)
tmpobj.record(YO.tvec,YO.vec)
}
index=objnum(tmpobj)
tmpobj=nil
return index
}
//** indconv(oldvec,newvec)
// indconv() // assumes oldvec in printlist.object(0).vec -- overwrites it
// indconv(num) // find oldvec in printlist.object(num).vec -- overwrites it
// indconv(newvec) // assumes oldvec in printlist.object(0).vec
// indconv(num,newvec) // find oldvec in printlist.object(num).vec
// eg indconv(printlist.object(0).vec,ind)
// change the numbers in a vector to the presyn
proc indconv () { local o2f,a
tmpobj=printlist.object(0).vec // default
if (numarg()==2) {
o2f=1
revec($o2)
if (argtype(1)==0) tmpobj=printlist.object($1).vec else tmpobj=$o1
} else if (numarg()==1) {
if (argtype(1)==0) tmpobj=printlist.object($1).vec else {
o2f=0
revec($o1)
}
} else {
o2f=-1
a=allocvecs(1)
}
for vtr(&x,tmpobj) {
NetCon[x].preloc
sscanf(secname(),"%*[^[][%d]",&x)
if (o2f==-1) mso[a].append(x) else {if (o2f) $o2.append(x) else $o1.append(x)}
pop_section()
}
if (o2f==-1) {
tmpobj.copy(mso[a])
dealloc(a)
}
}
// fspks (index,vec) put spike times for index in vec
// fspks (index,vec,num) use printlist.object(num).vec
// fspks (index,vec,spkvec,tvec)
proc fspks () { local a,b,ix
a=b=allocvecs(2) b+=1
if (numarg()==2) { ix=$1 XO=printlist.object(0).vec YO=printlist.object(0).tvec }
if (numarg()==3) { ix=$1 XO=printlist.object($3).vec YO=printlist.object($3).tvec }
if (numarg()==4) { ix=$1 XO=$o3 YO=$o4 }
revec($o2)
mso[a].indvwhere(XO,"==",ix)
$o2.index(YO,mso[a])
dealloc(a)
}
// fspks1(index,vec)
proc fspks1 () { local a,b,ix
if (numarg()==2) { ix=$1 XO=printlist.object($1).vec YO=printlist.object($1).tvec }
if (numarg()==4) { ix=$1 XO=$o3 YO=$o4 }
$o2.resize(XO.size)
$o2.xing(XO,YO,thresh) // times
}
//* new_printlist_ac(obj,name) adds params from an artificial cell with built-in vec dumping
proc new_printlist_ac () { local newflag
ulv()
if ($o1.savnum==0) newflag=1 else newflag=0
panobj = panobjl.object(0)
sprint(grvecstr,"%s.%s",$o1,$s2)
if (!use_lvardt_ && !using_cvode_) {
printf("Error: can't record artcell without cvode.\n") return }
if (! newflag) cvode_local(0) // don't create tvec
XO = new vitem(grvecstr,0)
printlist.append(XO)
cvode_local(1)
pln = printlist.count-1 // current printlist number
if (newflag) { // need tvec first time only
sprint(grvecstr,"%s.record(&%s.%s,XO.vec,XO.tvec)",$o1,$o1,$s2)
} else {
sprint(grvecstr,"%s.record(&%s.%s,XO.vec,tstr)",$o1,$o1,$s2)
}
execute1(grvecstr)
if (! newflag) {
sprint(grvecstr,"XO.tvec=%s",tstr)
execute1(grvecstr)
}
}
//* misc and commentary
// con=absolute convergence number, div=absolute div number
// con = %con * pre
// div * pre = con * post = S (total synapses)
// %div = div/post = S/(pre*post) = con/pre = %con
// div = %con * post
// maxdiv = int((1 + var) * div)
//** vari returns randomly chosen $1+/-$2, $2 is a percent
func frani () { return int(rdm.uniform($1,$2+1)) }
func uvari () { return $1 - $1*$2 + (rdm.uniform(0,1) * 2 * $1*$2) }
func gvari () { return $1 - (rdm.normal(0,1) * $1*$2) }
//** clearsyns()
proc clearsyns () {
for ltr(XO,ncl) XO.active(0)
ncl.remove_all
for ltr(XO,new List("NetCon")) printf("**** CLEARSYN WARNING %s STILL EXISTS ****\n",XO)
}
// findstr() look thru list for a string and return the index
func findstr () { local flag
flag = -1 // failure
for ltr(XO,$o2) {
if (strcmp($s1,XO.s) == 0) flag=i1
}
return flag
}
// END /usr/site/nrniv/local/hoc/syncode.hoc
//================================================================
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/spkts.hoc
// $Id: spkts.hoc,v 1.54 2003/07/29 22:34:47 billl Exp $
// ancillary programs for handling vectors
// load_proc("decvec")
//* transfer a file into a list of strings
// usage 'f2slist(list,file)'
proc f2slist() { local i
$o1.remove_all
if (! tmpfile.ropen($s2)) { print "Can't open ",$s2
return }
while (tmpfile.gets(temp_string_)>0) {
sfunc.head(temp_string_,"\n",temp_string_) // chop
tmpobj = new String(temp_string_)
$o1.append(tmpobj)
}
}
//* spkts(attrnum[,flag,min,max]) graph spikes from the vectors
thresh = 0 // threshold for deciding which are spikes
burstlen = 1.4 // duration of spike or burst, don't accept another till after this time
proc spkts_call() {}// callback function stub
proc spkts () { local cnt, attrnum, ii, pstep, jj, num, time0, flag, min, max, tst
vec.resize(0)
vec1.resize(0) // will store times and indices respectively
if (numarg()==0) { print "spkts(attrnum[,flag,min,max])\n\tflag 0: graph, flag 1: save vec1,vec to veclist, flag 2: save inds (vec1) and times (vec)" // infomercial
return }
attrnum = $1
panobj = panobjl.object(attrnum)
if (attrnum==0) { cnt=printlist.count() } else { cnt = panobj.llist.count() }
pstep = panobj.printStep
if (numarg()>1) { flag = $2 } else { flag = 0 }
if (numarg()>2) { min = $3 } else { min = 0 }
if (numarg()>3) { max = $4 } else { max = cnt-1 }
if (flag==0){
newPlot(0,1,0,1)
panobj.glist.append(graphItem)
}
for ii=min,max {
if (attrnum==0) {
vrtmp.copy(printlist.object(ii).vec)
if (panobj.printStep==-2) tvec = printlist.object(ii).tvec
if (panobj.printStep==-1) tvec = panobj.tvec
} else {
rv_readvec(attrnum,ii,vrtmp) // pick up vector from file
if (panobj.printStep<0) tvec = panobj.tvec
}
if (panobj.printStep>=0) { // make a tvec
if (!isobj(tvec,"Vector")) { print "ERR0 spkts(): tvec not a vector" return }
tvec.resize(vrtmp.size)
tvec.indgen(pstep)
}
spkts1(tvec,vrtmp,vec,vec1,ii)
if (panobj.printStep<0) { // a tvec
tst = vec.max
} else {
tst = pstep*vrtmp.size() // calc the tst
}
}
if (flag==1) { savevec(vec1) savevec(vec) }
if (flag<=0) {
vec1.mark(graphItem,vec,"O",panobj.line) // graph all the times
printf("\n")
graphItem.size(0,tst,min,max)
graphItem.xaxis(0)
graphItem.label(0.1,0.9,panobj.filename)
}
}
// spkts1(tvec,vec,timev,indexv,index)
proc spkts1 () { local ind,tm,ix
ix=$5
ind=tm=allocvecs(2) tm+=1
spkts_call() // place to reset thresh or do other manipulations
mso[tm].resize($o2.size)
mso[tm].xing($o2,$o1,thresh) // times
$o3.append(mso[tm]) // add the times for this to end of vec
mso[ind].resize(mso[tm].size) // scratch vector stores index
mso[ind].fill(ix)
$o4.append(mso[ind]) // add same index for each spk to end of vec1
dealloc(ind)
}
//* parse_spkts()
// pull the vec and vec1 files from spkts apart and put in alloc'ed vectors
func parse_spkts () { local p,q
p=allocvecs(vec1.max+2) q=p+1
for (ii=0;ii<=vec1.max;ii+=1) {
mso[p].indvwhere(vec1,"==",ii)
mso[q].index(vec,mso[p])
q += 1
}
return p+1
}
proc line_spkts () { local ii,min,max,xmax,skip
skip = $1
if (numarg()==3) { min=$2 max=$3 } else {
min = int(graphItem.size(3)+1) max = int(graphItem.size(4)) }
xmax = graphItem.size(2)
for (ii=min;ii<max;ii=ii+skip) {
graphItem.beginline()
graphItem.line(0,ii)
graphItem.line(xmax,ii)
}
graphItem.xaxis()
}
burst_time=0
burst_maxfreq = 30
calc_ave = 0
//** calcspkts(flag,index)
// run after spkts() so vec contains the times, vec1 contains the
// indices
proc calcspkts () { local ii,jj,flag,index,p1,p2,mn,mx
p1 = allocvecs(2,1000) p2 = p1+1
if (numarg()==0) {
print "To be run after spkts(). \
Assumes times in vec, indices in vec1. \
calcspkts(flag,min,max)\nflags:\t1\tspk times\n\t2\tspk freq \
\t3\tburst times\n\t4\tburst freq\nset calc_ave to get averages for freqs"
return
}
// vec contains the times, vec1 contains the indices
flag = $1
mn = $2
if (numarg()==3) { mx=$3 } else { mx=mn }
for index=mn,mx {
mso[p2].resize(0)
mso[p1].indvwhere(vec1,"==",index)
mso[p1].index(vec,mso[p1])
if (flag==1) {
printf("SPKS for #%d: ",index)
for jj=0,mso[p1].size()-1 {printf("%g ",mso[p1].x[jj])}
printf("\n")
} else if (flag==2) {
printf("FREQ for #%d: ",index)
for jj=0,mso[p1].size()-2 {
pushvec(mso[p2],1000./(mso[p1].x[jj+1]-mso[p1].x[jj])) }
if (calc_ave) { print mso[p2].mean } else { vlk(mso[p2]) }
} else if (flag==3) {
printf("BTIMES for #%d: ",index)
burst_time = mso[p1].x[0]
for jj=1,mso[p1].size()-1 {
if (1000./(mso[p1].x[jj]-burst_time) < burst_maxfreq) {
printf("%g ",burst_time)
burst_time = mso[p1].x[jj]
}
}
printf("\n")
} else if (flag==4) {
printf("BFREQ for #%d: ",index)
burst_time = mso[p1].x[0]
for jj=1,mso[p1].size()-1 {
// should keep track of spike times in case of very long bursts
if (1000./(mso[p1].x[jj]-burst_time) < burst_maxfreq) {
pushvec(mso[p2],1000./(mso[p1].x[jj]-burst_time))
burst_time = mso[p1].x[jj]
}
}
if (calc_ave) { print mso[p2].mean } else { mso[p2].printf }
}
}
dealloc(p1)
}
func rvwheres () { local ii
if ($1!=0) {
for ii=0,panobjl.object($1).llist.count()-1 {
if (sfunc.substr(panobjl.object($1).llist.object(ii).name,$s2)==0) {
return ii }
}
errorMsg("String not found in rvwheres.")
}
return -2
}
supind = 0
//* spkhist assume spk times in vec
// allows superimposing of graphs
// spkhist(bin_size)
proc spkhist () { local ii,jj,min,max,diff
if (numarg()==0) { print "spkhist(bin_size)" return }
if (numarg()==3) { min=$2 max=$3 } else { min=0 max=tstop }
diff = max-min
vrtmp.hist(vec,min,max,$1)
vec0.resize(4*diff/$1)
vec1.resize(4*diff/$1)
vec0.fill(0) vec1.fill(0)
for (ii=min;ii<int(diff/$1);ii=ii+1) {
jj=ii*4
vec0.x[jj+0] = ii*$1
vec0.x[jj+1] = ii*$1
vec0.x[jj+2] = (ii+1)*$1
vec0.x[jj+3] = (ii+1)*$1
vec1.x[jj+0] = 0
vec1.x[jj+1] = vrtmp.x[ii]
vec1.x[jj+2] = vrtmp.x[ii]
vec1.x[jj+3] = 0
}
if (panobj.super==0) {
newPlot(min,max,0,vrtmp.max)
panobj.glist.append(graphItem)
} else { graphItem = panobjl.object(panobj.remote).glist.object(supind)
supind = supind+1 }
vec1.line(graphItem,vec0)
sprint(temp_string_,"Hist: %s %d",panobj.filename,$1)
graphItem.label(0.1,0.9,temp_string_)
}
//** truncvec (vec1,vec2,margin)
// truncate a thresholded time vector so that only one time is given for each spike
// vec1 has thresholded times, vec2 is for scratch use, margin is duration of a spike
proc truncvec () { local ii, num, marg, time0
marg = $3
num=0 time0=-1e3
$o2.resize($o1.size())
$o2.fill(-2)
for ii=0,$o1.size()-1 {
if ($o1.x[ii] > time0+marg) {
$o2.x[ii] = $o1.x[ii]
time0 = $o1.x[ii]
}
}
$o1.where($o2,">",-1)
}
//** redundout(vec) eliminates sequential redundent entries
// destructive
proc redundout () { local x,ii,p1
p1=allocvecs(1)
$o1.sort
x = $o1.x[0]
for ii=1,$o1.size-1 {
if ($o1.x[ii]==x) { $o1.x[ii]=-1e20 } else { x=$o1.x[ii] }
}
mso[p1].where($o1,">",-1e20)
$o1.copy(mso[p1])
dealloc(p1)
}
//** redundkeep(vec) keeps sequential redundent entries
// destructive
proc redundkeep () { local x,ii
$o1.sort
x = $o1.x[0]
for ii=1,$o1.size-1 {
if ($o1.x[ii]!=x) { $o1.x[ii-1]=-1e20 x=$o1.x[ii] }
}
$o1.where($o1,">",-1e20)
}
//** after running spkall can see which cells are responsible for spks
// assumes spk times in vec, spk identities in vec1
// uses ind and vec0
proc whichspked () { local ii
ind.indvwhere(vec,"()",$1,$2) // a range
vec0 = vec1.ind(ind)
ind = vec.ind(ind)
for ii=0,ind.size()-1 { printf("%d %g\n",vec0.x[ii],ind.x[ii]) }
}
// firebtwn(ind,time,min,max) list of cells that fire between times min and max
proc firebtwn () { local ii,p1,p2,p3
p1 = allocvecs(3) p2=p1+1 p3=p2+1
mso[p3].indvwhere($o2,"[]",$3,$4)
mso[p1].index($o1,mso[p3]) // indices
mso[p2].index($o2,mso[p3]) // times
printf("%d hits\n",mso[p3].size)
for vtr2(&x,&y,mso[p1],mso[p2]) {
printf("%4d::%6.2f ",x,y)
if ((ii+1)%5==0) { print "" }
}
print ""
dealloc(p1)
// dealloc(p2) // to save the indexes
}
// elimind(ind,time,min,max) take out cells with nums between min,max
// destructive
proc elimind () { local ii,p1
p1 = allocvecs(1)
mso[p1].indvwhere($o1,"[]",$3,$4)
vecelim($o1,mso[p1]) vecelim($o2,mso[p1])
dealloc(p1)
}
// index/time graph
// tigr(ind,vec,size,marker)
proc tigr () { local sz
if (numarg()==0) { print "tigr(Yvec,Xvec,marker size,marker type)"
print "Marker types: \"o\",t,s,O,T,S,+ (circ, tri, square; CAP is filled)"
return }
if (numarg()>2) { sz=$3 } else { sz=6 }
if (numarg()>3) { temp_string_=$s4 } else { temp_string_="O" }
nvplt($o2)
graphItem.size($o2.min,$o2.max,$o1.min,$o1.max)
$o1.mark(graphItem,$o2,temp_string_,sz,panobj.curcol)
}
// END /usr/site/nrniv/local/hoc/spkts.hoc
//================================================================
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/boxes.hoc
// $Id: boxes.hoc,v 1.42 2003/07/19 19:40:09 billl Exp $
proc boxes () {}
// factor(num) finds the factors that are closest together
// NB: must be at top since declared external in template BX
func factor () { local num, srt, ii
num = $1
srt = int(sqrt(num))
for (ii=srt;ii<num && num/ii!=int(num/ii);ii+=1) {}
if (ii>num/ii) ii=num/ii // return smaller factor
return ii
}
// template for putting up trays and decks
begintemplate BX
public mktray,mkdeck,name,boxes,glist,map,closebox
public min,max,attrnum,rows,cols,trnum,gl
external rv,gv,factor,ltr
objref boxes[3], ob, gitem,gl,XO,nil
double min[1],max[1],trnum[1]
strdef temp_string_,name
proc init () {
min = -1 max = -1
trnum=$1
gl = new List()
}
//mktray(panattr) graph out from llist of a panattr
proc mktray () { local ci, ri, gi, m1, m2, bi
attrnum=$2
ob = $o1.object($2)
cols=$4 rows=$3
if (numarg()==6) {xs=$5 ys=$6} else {xs=100 ys=50}
ri = 0 // count the rows
gi = 0 // count the graphs
boxes[0] = new VBox()
boxes[0].dismiss_action("closebox()")
boxes[0].intercept(1)
name=""
xpanel("",1)
xvarlabel(name)
xpanel()
for ri=0,rows-1 {
boxes[2] = new HBox()
boxes[2].intercept(1)
for ci=0,cols-1 {
gitem = new Graph(0)
gitem.view(0,-100,1000,50,0,0,xs,ys)
gl.append(gitem)
ob.glist.append(gitem)
gi = gi+1
}
boxes[2].intercept(0)
boxes[2].map("")
}
boxes[0].intercept(0)
if (strcmp(name,"")==0) name=ob.filename
sprint(name,"%d:%s",trnum,name)
boxes[0].map(name)
}
proc map() { boxes[0].map() }
proc closebox () { local ii
for (ii=gl.count-1;ii>=0;ii-=1) {
XO=gl.object(ii)
XO.unmap
}
ob.glist.remove_all
gl.remove_all
boxes[0].unmap
boxes[0]=nil
boxes[2]=nil
}
proc mkdeck () { local rows, cols, ci, ri, gi, m1, m2
ob = $o1.object($2)
if (min==-1 || max==-1) {
m1 = 0 m2 = ob.llist.count()-1
} else { m1=min m2=max }
cnt = m2-m1+1
cols=factor(cnt) rows=cnt/factor(cnt)
ri = 0 // count the rows
gi = 0 // count the graphs
boxes[0] = new VBox()
boxes[0].intercept(1)
xpanel("",1)
xbutton("Next","boxes[1].flip_to(decknum=decknum+1)")
xbutton("Previous","boxes[1].flip_to(decknum=decknum-1)")
xpanel()
boxes[1] = new Deck()
boxes[1].intercept(1)
for ri=0,rows-1 {
boxes[2] = new HBox()
boxes[2].intercept(1)
for ci=0,cols-1 {
rv($2,gi+m1)
gi = gi+1
}
boxes[2].intercept(0)
boxes[2].map("")
}
boxes[1].intercept(0)
boxes[1].map("")
boxes[0].intercept(0)
boxes[0].map("Deck")
decknum = 0
boxes[1].flip_to(decknum)
if ($2!=0) {
for ii = 0,gi-1 {
ob.glist.object(ii).label(0.3,0.5,ob.llist.object(ii).name)
}
}
}
endtemplate BX
objref boxer, boxerl
boxerl = new List()
proc mktray () {
if (numarg()==0) { print "mktray(attrnum,rows,cols[,xsize,ysize,label])"
print "Create a tray for attr panel ATTRNUM to superimpose upon."
return }
boxer = new BX(boxerl.count)
boxerl.append(boxer)
trnum=boxer.trnum
if ($1>panobjl.count-1) {
attrlist(5,$1,"NEW","",printStep)
}
panobjl.object($1).super = 1
if (numarg()>3 && numarg()!=4) {
boxer.mktray(panobjl,$1,$2,$3,$4,$5)
} else {
boxer.mktray(panobjl,$1,$2,$3)
}
if (numarg()==4) { boxer.name=$s4 }
if (numarg()==6) { boxer.name=$s6 }
}
proc rmtray () { local attrnum
attrnum=$1
if (boxerl.count<=1) boxerl.remove_all else {
for (ii=boxerl.count-1;ii>=0;ii-=1) {
if (boxerl.object(ii).attrnum==attrnum) boxerl.remove(ii)
}}
remgrs(attrnum)
panobj.super=0
}
proc trsz () {
if (boxerl.count>0) for ltr (XO,boxerl) printf("%d:%d x %d\n",XO.attrnum,XO.rows,XO.cols)
}
proc mktrpanl () {
xgetargs("Make Tray","mktray","Which","rows","cols","xsize","ysize","0,2,3,100,50")
}
//* disptray() redisp() redispv()
proc disptray () { local ii,jj,kk
if (numarg()==0) {print "disptray(attrnum[,cols])" return}
attrnum=$1
ii=panobjl.object(attrnum).llist.count
if (numarg()==2) jj=$2 else jj=factor(ii)
kk=panobjl.object(attrnum).glist.count
mktray(attrnum,ii/jj,jj,100,50)
grall(attrnum,0,ii-1,attrnum,kk)
for ltr(XO,panobjl.object(attrnum).glist) if(i1>=kk) {
XO.size(&x[0])
XO.size(x[0],x[1],x[2],x[3]) }
}
proc redisp () { local supsav
if (numarg()>=2) attrnum=$2
if (numarg()>=3) trnum=$3
panobj=panobjl.object(attrnum)
supsav=panobj.super panobj.super=1
for ltr(graphItem,boxerl.object(trnum).gl) {
graphItem.erase_all()
rv(attrnum,i1)
}
panobj.super=supsav
}
// for bxit () {} go through all the graphs in tray trnum
// for bxit (g1,g2,g3,g4) {} go through selected graphs
// for bxit (-1,g1,g2) {} go through g1-g2
proc bxop () { g=boxerl.object(trnum).gl.object($1) }
iterator bxit () { local i,ii
i1=0
if (numarg()>0) {
if (numarg()==3 && $1==-1) {
for ii = $2, $3 {
g=boxerl.object(trnum).gl.object(ii)
graphItem=g
iterator_statement
i1+=1
}
} else {
for i = 1, numarg() {
if (numarg()==1) XO=$o1.object(ii)
g=boxerl.object(trnum).gl.object($i)
graphItem=g
iterator_statement
i1+=1
}
}
} else {
for ii=0,boxerl.object(trnum).gl.count-1 {
g=boxerl.object(trnum).gl.object(ii)
graphItem=g
iterator_statement
i1+=1
}
}
}
// redispv(VEC,ATTRNUM,TRNUM) -- all args optional
proc redispv () { local supsav
if (numarg()>=2) attrnum=$2
if (numarg()>=3) trnum=$3
panobj=panobjl.object(attrnum)
supsav=panobj.super panobj.super=1
for bxit() {
g.erase_all()
if (numarg()>0) rv(attrnum,$o1.x[i1]) else rv(attrnum,vec.x[i1])
}
panobj.super=supsav
}
proc bxcomm () {
if (numarg()==1) boxerl.object(boxerl.count-1).name=$s1 else {
boxerl.object(boxerl.count-1).name=comment }
}
// END /usr/site/nrniv/local/hoc/boxes.hoc
//================================================================
//================================================================
// INSERTED /usr/site/nrniv/local/hoc/colors.hoc
// $Id: colors.hoc,v 1.12 2003/07/06 22:39:36 billl Exp $
proc colors () {}
//* cbin(min,max): binary colormap
proc cbin () {
$o1.colormap(2)
$o1.colormap(0, 255, 0, 0)
$o1.colormap(1, 255, 255, 0)
$o1.scale($2, $3)
}
//* ternary color map
proc ctern () {
$o1.colormap(3)
$o1.colormap(0, 255, 0, 0)
$o1.colormap(1, 255, 255, 0)
$o1.colormap(2, 0, 0, 255)
$o1.scale($2, $3)
}
//* cbw(min,max): b/w binary colormap
proc cbw () {
$o1.colormap(2)
$o1.colormap(0, 0, 0, 0)
$o1.colormap(1, 255, 255, 255)
$o1.scale($2, $3)
}
//* usage: c1(PLT,# colors)
proc c1 () { local sz,j,jmp,n
if ($2>63) { print "2nd arg must be < 63" return }
sz=$2 j=n=-1 jmp=int(63/sz)
$o1.colormap(sz)
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,175.312) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,15.9375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,31.875,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,47.8125,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,63.75,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,79.6875,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,95.625,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,111.562,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,127.5,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,143.438,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,159.375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,175.312,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,191.25,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,207.188,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,223.125,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,239.062,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,15.9375,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,31.875,255,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,47.8125,255,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,63.75,255,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,79.6875,255,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,95.625,255,175.312) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,111.562,255,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,127.5,255,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,143.438,255,127.5) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,159.375,255,111.562) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,255,95.625) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,191.25,255,79.6875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.188,255,63.75) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,255,47.8125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.062,255,31.875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,15.9375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,239.062,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,223.125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,207.188,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,191.25,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,175.312,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,159.375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,143.438,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,127.5,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,111.562,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,95.625,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,79.6875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,63.75,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,47.8125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,31.875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,15.9375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.062,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.188,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,191.25,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,159.375,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,143.438,0,0) }
}
proc c1a () { local sz,j,jmp,n
if ($2>63) { print "2nd arg must be < 63" return }
sz=$2 j=n=-1 jmp=int(63/sz)
$o1.colormap(sz)
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,175.312) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,15.9375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,31.875,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,47.8125,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,63.75,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,79.6875,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,95.625,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,111.562,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,127.5,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,143.438,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,159.375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,175.312,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,191.25,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,207.188,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,223.125,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,239.062,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,15.9375,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,31.875,255,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,47.8125,255,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,63.75,255,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,79.6875,255,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,95.625,255,175.312) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,111.562,255,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,127.5,255,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,143.438,255,127.5) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,159.375,255,111.562) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,255,95.625) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,191.25,255,79.6875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.188,255,63.75) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,255,47.8125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.062,255,31.875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,15.9375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,239.062,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,223.125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,207.188,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,191.25,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,175.312,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,159.375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,143.438,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,127.5,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,111.562,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,95.625,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,79.6875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,63.75,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,47.8125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,31.875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,15.9375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.062,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.188,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,191.25,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,159.375,0,0) }
}
//* usage: cprint(PLT,# colors) -- extract colors for marks
// eg graph.color(0,"#ffffff")
// cprint(sh,19) // to get 19 colors
proc cprint () { local sz,j,jmp,n
if ($2>63) { print "2nd arg must be < 63" return }
sz=$2 j=n=-1 jmp=int(63/sz)
$o1.colormap(sz)
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,207.188) printf("%d \"#%02x%02x%02x\"\n", n,0,0,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,223.125) printf("%d \"#%02x%02x%02x\"\n", n,0,0,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,239.062) printf("%d \"#%02x%02x%02x\"\n", n,0,0,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,0,255) printf("%d \"#%02x%02x%02x\"\n", n,0,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,15.9375,255) printf("%d \"#%02x%02x%02x\"\n", n,0,15.9375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,31.875,255) printf("%d \"#%02x%02x%02x\"\n", n,0,31.875,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,47.8125,255) printf("%d \"#%02x%02x%02x\"\n", n,0,47.8125,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,63.75,255) printf("%d \"#%02x%02x%02x\"\n", n,0,63.75,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,79.6875,255) printf("%d \"#%02x%02x%02x\"\n", n,0,79.6875,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,95.625,255) printf("%d \"#%02x%02x%02x\"\n", n,0,95.625,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,111.562,255) printf("%d \"#%02x%02x%02x\"\n", n,0,111.562,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,127.5,255) printf("%d \"#%02x%02x%02x\"\n", n,0,127.5,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,143.438,255) printf("%d \"#%02x%02x%02x\"\n", n,0,143.438,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,159.375,255) printf("%d \"#%02x%02x%02x\"\n", n,0,159.375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,175.312,255) printf("%d \"#%02x%02x%02x\"\n", n,0,175.312,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,191.25,255) printf("%d \"#%02x%02x%02x\"\n", n,0,191.25,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,207.188,255) printf("%d \"#%02x%02x%02x\"\n", n,0,207.188,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,223.125,255) printf("%d \"#%02x%02x%02x\"\n", n,0,223.125,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,239.062,255) printf("%d \"#%02x%02x%02x\"\n", n,0,239.062,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,255) printf("%d \"#%02x%02x%02x\"\n", n,0,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,15.9375,255,255) printf("%d \"#%02x%02x%02x\"\n", n,15.9375,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,31.875,255,239.062) printf("%d \"#%02x%02x%02x\"\n", n,31.875,255,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,47.8125,255,223.125) printf("%d \"#%02x%02x%02x\"\n", n,47.8125,255,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,63.75,255,207.188) printf("%d \"#%02x%02x%02x\"\n", n,63.75,255,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,79.6875,255,191.25) printf("%d \"#%02x%02x%02x\"\n", n,79.6875,255,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,95.625,255,175.312) printf("%d \"#%02x%02x%02x\"\n", n,95.625,255,175.312) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,111.562,255,159.375) printf("%d \"#%02x%02x%02x\"\n", n,111.562,255,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,127.5,255,143.438) printf("%d \"#%02x%02x%02x\"\n", n,127.5,255,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,143.438,255,127.5) printf("%d \"#%02x%02x%02x\"\n", n,143.438,255,127.5) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,159.375,255,111.562) printf("%d \"#%02x%02x%02x\"\n", n,159.375,255,111.562) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,255,95.625) printf("%d \"#%02x%02x%02x\"\n", n,175.312,255,95.625) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,191.25,255,79.6875) printf("%d \"#%02x%02x%02x\"\n", n,191.25,255,79.6875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.188,255,63.75) printf("%d \"#%02x%02x%02x\"\n", n,207.188,255,63.75) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,255,47.8125) printf("%d \"#%02x%02x%02x\"\n", n,223.125,255,47.8125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.062,255,31.875) printf("%d \"#%02x%02x%02x\"\n", n,239.062,255,31.875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,15.9375) printf("%d \"#%02x%02x%02x\"\n", n,255,255,15.9375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,0) printf("%d \"#%02x%02x%02x\"\n", n,255,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,239.062,0) printf("%d \"#%02x%02x%02x\"\n", n,255,239.062,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,223.125,0) printf("%d \"#%02x%02x%02x\"\n", n,255,223.125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,207.188,0) printf("%d \"#%02x%02x%02x\"\n", n,255,207.188,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,191.25,0) printf("%d \"#%02x%02x%02x\"\n", n,255,191.25,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,175.312,0) printf("%d \"#%02x%02x%02x\"\n", n,255,175.312,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,159.375,0) printf("%d \"#%02x%02x%02x\"\n", n,255,159.375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,143.438,0) printf("%d \"#%02x%02x%02x\"\n", n,255,143.438,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,127.5,0) printf("%d \"#%02x%02x%02x\"\n", n,255,127.5,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,111.562,0) printf("%d \"#%02x%02x%02x\"\n", n,255,111.562,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,95.625,0) printf("%d \"#%02x%02x%02x\"\n", n,255,95.625,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,79.6875,0) printf("%d \"#%02x%02x%02x\"\n", n,255,79.6875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,63.75,0) printf("%d \"#%02x%02x%02x\"\n", n,255,63.75,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,47.8125,0) printf("%d \"#%02x%02x%02x\"\n", n,255,47.8125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,31.875,0) printf("%d \"#%02x%02x%02x\"\n", n,255,31.875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,15.9375,0) printf("%d \"#%02x%02x%02x\"\n", n,255,15.9375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,0) printf("%d \"#%02x%02x%02x\"\n", n,255,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.062,0,0) printf("%d \"#%02x%02x%02x\"\n", n,239.062,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,0,0) printf("%d \"#%02x%02x%02x\"\n", n,223.125,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.188,0,0) printf("%d \"#%02x%02x%02x\"\n", n,207.188,0,0) }
}
//* c2()
proc c2 () { local sz,j,jmp,n
if ($2>63) { print "2nd arg must be < 63" return }
sz=$2 j=n=-1 jmp=int(63/sz)
$o1.colormap(sz)
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,23.919,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,47.8125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,71.706,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,95.625,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,119.544,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,143.438,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,167.331,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,191.25,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,215.169,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,239.062,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,247.044,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,199.206,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,151.419,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,127.5,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,103.581,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,79.6875,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,55.794,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,31.875,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,7.956,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,15.9375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,39.831) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,63.75) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,87.669) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,111.562) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,135.456) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,183.294) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,231.081) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,255,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,231.081,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,207.188,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,183.294,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,159.375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,135.456,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,111.562,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,87.669,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,63.75,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,39.831,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,0,15.9375,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,7.956,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,31.875,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,55.794,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,79.6875,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,103.581,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,127.5,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,151.419,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,175.312,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,199.206,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,247.044,0,255) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,215.169) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,167.331) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,119.544) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,95.625) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,71.706) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,47.8125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,23.919) }
}
//* c3()
proc c3 () { local sz,j,jmp,n
if ($2>63) { print "2nd arg must be < 63" return }
sz=$2 j=n=-1 jmp=int(63/sz)
$o1.colormap(sz)
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,10.6335,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,21.2415,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,31.875,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,42.5085,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,53.1165,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,63.75,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,74.3835,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,84.9915,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,95.625,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,106.258,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,116.867,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,127.5,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,138.133,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,148.742,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,159.375,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,170.008,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,180.617,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,191.25,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,201.883,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,212.492,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.125,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,233.758,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,244.367,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,10.6335,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,21.2415,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,31.875,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,42.5085,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,53.1165,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,63.75,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,74.3835,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,84.9915,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,95.625,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,106.258,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,116.867,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,127.5,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,138.133,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,148.742,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,159.375,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,170.008,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,180.617,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,191.25,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,201.883,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,212.492,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,223.125,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,233.758,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,244.367,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,15.9375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,31.875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,47.8125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,63.75) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,79.6875) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,95.625) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,111.562) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,127.5) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,143.438) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,159.375) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,175.312) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,191.25) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,207.188) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,223.125) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,239.062) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,255) }
}
//* c4()
proc c4 () { local sz,j,jmp,n
if ($2>63) { print "2nd arg must be < 63" return }
sz=$2 j=n=-1 jmp=int(63/sz)
$o1.colormap(sz)
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,30.0645,0,0) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,49.9545,26.2395,26.2395) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,63.9285,37.1025,37.1025) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,75.3525,45.441,45.441) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,85.2465,52.4535,52.4535) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,94.1205,58.65,58.65) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,102.23,64.26,64.26) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,109.727,69.411,69.411) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,116.764,74.205,74.205) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,123.394,78.693,78.693) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,129.667,82.9515,82.9515) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,135.66,87.006,87.006) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,141.423,90.8565,90.8565) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,146.931,94.5795,94.5795) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,152.26,98.1495,98.1495) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,157.386,101.592,101.592) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,162.359,104.932,104.932) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,167.203,108.145,108.145) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,171.895,111.282,111.282) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,176.46,114.342,114.342) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,180.897,117.3,117.3) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,185.258,120.207,120.207) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,189.49,123.037,123.037) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,193.647,125.791,125.791) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,195.432,131.962,128.52) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,197.166,137.879,131.147) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,198.9,143.514,133.748) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,200.634,148.971,136.297) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,202.343,154.224,138.797) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,204.026,159.299,141.27) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,205.708,164.22,143.667) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,207.392,168.988,146.038) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,209.023,173.629,148.385) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,210.681,178.143,150.679) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,212.287,182.554,152.949) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,213.919,186.864,155.193) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,215.526,191.071,157.386) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,217.107,195.202,159.554) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,218.688,199.232,161.696) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,220.244,203.184,163.812) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,221.799,207.06,165.903) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,223.355,210.885,167.968) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,224.885,214.608,170.008) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,226.415,218.28,172.023) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,227.919,221.901,174.012) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,229.424,225.471,175.976) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,230.928,228.965,177.913) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,232.407,232.407,179.826) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,233.886,233.886,185.436) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,235.365,235.365,190.868) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,236.819,236.819,196.146) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,238.272,238.272,201.272) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,239.7,239.7,206.295) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,241.128,241.128,211.191) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,242.556,242.556,215.959) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,243.958,243.958,220.651) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,245.387,245.387,225.216) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,246.763,246.763,229.704) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,248.166,248.166,234.115) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,249.543,249.543,238.451) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,250.92,250.92,242.684) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,252.297,252.297,246.865) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,253.649,253.649,250.971) }
if ((j+=1)%jmp==0) {n+=1 $o1.colormap(n,255,255,255) }
}
// END /usr/site/nrniv/local/hoc/colors.hoc
//================================================================
// END init.hoc
//================================================================
//================================================================
// INSERTED geom.hoc
// $Id: geom.hoc,v 1.16 2003/07/30 13:53:48 billl Exp $
install_vecst()
//* labels
objref sn[2]
for ii=0,1 sn[ii]=new List()
STYPi= 5
AM = 0
NM = 1
GA = 2
GB = 3
IC = 4
for scase("AMPA","NMDA","GABAA","GABAB","IClamp") sn[0].append(new String(temp_string_))
for scase("ampa","nmda","gabaa","gabab","inj") sn[1].append(new String(temp_string_))
//* Artificial cell home
create acell_home_
access acell_home_
// C_IntIbFire
//* Cortical interneuron INT
// One compartment model
//** begintemplate INT
begintemplate INT // create a new template object
public soma,vpreconnect,vp
public up,po
external STYPi
objref po[1],vp
objref this,up,tobj
create soma[1]
proc init() { local v_potassium, v_sodium
num = $1 fflag=0
objref po[STYPi]
vp=new List()
soma {
Ra = 100 // geometry
nseg = 1
cm=1
diam = 10.
L = 10./PI
}
}
proc vpreconnect () {
soma tobj=new fvpre(0.5)
vp.append(tobj)
setpointer tobj.vpre, $o1.soma.v(0.5)
}
endtemplate INT
//* begintemplate SpikePlot1
begintemplate SpikePlot1
public cells, vecs, g, update
public map, save_data, b
public flush, begin, plot, size, view_count, fastflush
external addplot, tstop
objref cells, vecs[1], nc, g, this, y, tobj, b, outlist, nil
strdef tstr, modestr
proc init() {
fwindow = 100
binwidth = .1
modestr = "Spikes "
mode=1
y = new Vector(1000)
cells = $o1
if (numarg() == 1) {
build()
map()
}
}
proc map() {
sprint(tstr, "%s for %s", this, cells)
if (numarg() > 1) {
b.map(tstr, $2,$3,$4,$5)
}else{
b.map(tstr)
}
update()
flush()
}
proc unmap() {
b.unmap()
g = nil
}
proc build() {
b = new VBox(3)
b.priority(600)
b.save("")
b.ref(this)
b.dismiss_action("unmap()")
b.intercept(1)
xpanel("")
xmenu("Plot")
xbutton("Update", "update() flush()")
xradiobutton("Spikes", "pmode(1)", mode==1)
xradiobutton("Frequency", "pmode(2)", mode==2)
xradiobutton("Histogram", "pmode(3)", mode==3)
xmenu()
xvarlabel(modestr)
xpvalue("Freq Window (ms)", &fwindow, 1, "flush()")
xpvalue("Hist Bin (ms)", &binwidth, 1, "flush()")
xpanel()
g = new Graph()
b.intercept(0)
addplot(this, 1)
begin()
pmode(mode)
}
proc pmode() {
mode = $1
if (mode == 1) {
modestr = "Spikes "
}else if (mode == 2) {
modestr = "Frequency"
}else if (mode == 3) {
modestr = "Histogram"
}
flush()
}
proc update() {local i
n = cells.count
if (n == 0) return
objref vecs[n]
for i=0, n-1 {
vecs[i] = new Vector(0)
tobj = cells.object(i)
tobj.connect2target(nil, nc)
sprint(tstr, "%s", tobj)
vecs[i].label(tstr)
nc.record(vecs[i])
}
objref nc, tobj
}
proc begin() {
}
func view_count() {
if (g == nil) {
return 0
}
return g.view_count()
}
proc plot() {
}
func size() {
if (numarg() == 4) {
g.size($1,$2,0,cells.count+1)
return 1.
}else{
return g.size($1)
}
}
proc fastflush() {}
proc flush() {local i
g.erase_all
g.vfixed(1)
g.label(.9,1)
if (mode == 1) {
for (i=n-1; i >= 0; i -= 1) {
y.resize(vecs[i].size).fill(i+1)
y.label(vecs[i].label)
y.mark(g, vecs[i], "|", 8, 1, 1)
y.line(g, vecs[i], 1, 0)
}
}else if (mode == 2) {
for (i=n-1; i >= 0; i -= 1) {
y = vecs[i].sumgauss(0, tstop, tstop/100, fwindow)
y.label(vecs[i].label)
y.mul(1000).line(g, y.c.indgen(0, tstop/100), 1,1)
}
}else if (mode == 3) {
for (i=n-1; i >= 0; i -= 1) if (vecs[i].size > 1){
y = vecs[i].c.deriv(1,1)
high = y.max
y = y.sumgauss(0, high, high/50, binwidth)
y.label(vecs[i].label)
y.line(g, y.c.indgen(0, high/50), 1,1)
}
}
g.flush()
}
endtemplate SpikePlot1
// END geom.hoc
//================================================================
//================================================================
// INSERTED network.hoc
// $Id: network.hoc,v 1.33 2003/07/29 22:03:38 billl Exp $
objref animv[2]
objref cells, rcells, nclist, netcon
for ii=0,1 animv[ii]=new Vector()
{cells = new List() rcells = new List() nclist = new List()}
//* createnet()
proc createanet () { local i, j
netcon = nil
nclist.remove_all()
cells.remove_all()
for i=0, ncell-1 cells.append(new IntFire2(.5))
wire()
}
proc createRnet () { local i, j
netcon = nil
nclist.remove_all()
rcells.remove_all()
for i=0,ncell-1 {
tmpobj = new INT(ii)
rcells.append(tmpobj)
// tmpobj.soma tmpobj.po[GA]=new GABAA(0.5)
}
}
//* wire()
proc wire () { local i,j
nclist.remove_all()
for i=0,ncell-1 for j=0,ncell-1 if (i!=j) {
netcon = new NetCon(cells.object(i),cells.object(j))
nclist.append(netcon)
}
}
//* wirepre()
proc wirepre () { local i,j
nclist.remove_all()
for i=0,ncell-1 for j=0,ncell-1 if (i!=j) {
rcells.object(i).vpreconnect(rcells.object(j))
}
}
//* wirer()
proc wirer () { local i,j
nclist.remove_all()
for i=0,ncell-1 for j=0,ncell-1 if (i!=j) {
rcells.object(i).soma netcon = new NetCon(&v(0.5),rcells.object(j).po[GA])
nclist.append(netcon)
}
}
proc ranwire () { local proj,beg,end
nclist.remove_all()
rdm.discunif(0,ncell-1)
for i=0,ncell-1 {
proj=rdm.repick()
if (proj<ncell/2) { beg=proj end=proj+int(ncell/2)-1
} else { beg=proj-int(ncell/2)+1 end=proj }
for j=beg,end if (i!=j) {
netcon = new NetCon(cells.object(i),cells.object(j))
nclist.append(netcon)
}
}
}
//* weight(),delay(),tau(),interval()
proc weight () { local i
w = $1
for ltr(XO,nclist) {
XO.weight = $1
XO.threshold=-20
}
}
proc weight2 () { local i,ww
w = $1
for i=0,nclist.count-1 {
if ($o2.contains(i)) ww=0 else ww=w
nclist.object(i).weight = ww
}
}
proc wtpre () { local i,ww
w = $1
for ltr(XO,new List("fvpre")) XO.gmax=w
}
proc delay () { local i
del = $1
for i=0, nclist.count-1 {
nclist.object(i).delay = $1
}
}
proc tau () { local i
ta = $1
for i=0, cells.count-1 {
cells.object(i).tau = $1
}
}
proc interval () { local i, x, dx // args are low and high
low = $1
high = $2
rdm.uniform(low,high)
vec.resize(ncell)
vec.setrand(rdm)
for i=0, cells.count-1 {
cells.object(i).ib = vec.x[i]
}
}
// END network.hoc
//================================================================
//================================================================
// INSERTED params.hoc
// $Id: params.hoc,v 1.49 2003/07/30 14:52:28 billl Exp $
cvode_local(0)
cvode_active(1)
// convert phi value from Wang&Buzsaki to a temperature
proc phi() {celsius = (10*log($1) + 27*log(5))/log(5)}
tstop = 500
phi0=5
phi(phi0)
v_init=1000 // so keep v's as set randomly
ncell = 100
ta=10
w=1e-4
del=4
low=1.1
high=2
createRnet(ncell)
wirepre()
proc setRparams () {
for ltr(XO,rcells) {
XO.soma {
insert naf
insert kdr
insert pas
g_pas = 1e-4
e_pas = -65
}
XO.soma {
XO.po[IC]=new IClamp(0.5)
XO.po[IC].amp=1e-3 // will give 1 microA/cm^2
XO.po[IC].dur=1e9
}
}
}
proc setparams () {
weight(w)
delay(del)
// tau(ta)
interval(low, high)
}
if (cells.count>0) setparams()
if (rcells.count>0) setRparams()
// if (rcells.count>0) weight(w)
if (rcells.count>0) wtpre(w/99)
amp0=1
for ltr(XO,rcells) XO.po[IC].amp=amp0*1e-3
// END params.hoc
//================================================================
//================================================================
// INSERTED run.hoc
// $Id: run.hoc,v 1.88 2003/07/30 15:48:06 billl Exp $
proc init () {
initMisc1 ()
finitialize()
}
proc setMemb () {}
//* savspks() -- save to a vector
proc savspks () { local ii
for ii=0,1 animv[ii].resize(0)
for ltr(XO,cells) {
if (cvode.netconlist(XO, "", "").count==0) {
tmpobj=new NetCon(XO.pp, nil)
} else {
tmpobj=cvode.netconlist(XO, "", "").object(0)
}
tmpobj.record(tvec,ind)
animv[0].append(objnum(tmpobj))
animv[1].append(objnum(tmpobj.pre)) // in this case are all in a row anyway
}
}
objref vrdv // random voltage vector
vrdv=new Vector(ncell)
proc randvs () {
rdm.uniform(-68,-55)
vrdv.setrand(rdm)
sprint(mesg,"V_init mean=%g; sdev=%g",vrdv.mean,vrdv.stdev)
print mesg
}
randvs()
proc initMisc1 () {
for lvtr(XO,&x,rcells,vrdv) XO.soma.v = x
}
savspks()
proc showspks () {
g.erase
ind.mark(g,tvec,"O",2,2,1)
for vtr(&x,tvec) {
g.beginline(3,1)
g.line(x,ind.min) g.line(x,ind.max)
}
g.flush()
}
proc prl () {
printStep=0.05
printlist.remove_all
// for ltr(XO,rcells) { sprint(tstr,"%s",XO) new_printlist_nc(tstr,0) }
record(new List("INT"),"soma.v(0.5)")
}
prl()
proc stxshow () {
nrncontrolmenu()
mesg="Wang/Buzsaki net"
xpanel("Wang/Buzsaki net")
xvarlabel(mesg)
xvalue("phi","phi0",1,"phi(phi0)")
xvalue("Current inj.","amp0",1,"for ltr(XO,rcells) XO.po[IC].amp=amp0*1e-3")
xbutton("Run","run()")
xbutton("Rerandomize","randvs()")
xbutton("Spike plot","panobj.line=4 spkts(0)")
xbutton("Plot cells A&B","showgrs()")
xvalue("Cell A","cellA")
xvalue("Cell B","cellB")
xpanel()
}
cellA=15
cellB=83
proc showgrs () {
if (cellA<0 || cellA>=ncell || cellB<0 || cellB>=ncell) {
sprint(mesg,"ERR: cell numbers range from 0 to %d",ncell-1)
print mesg
return
}
panobj.super=0 panobj.line=4
// spkts(0)
panobj.line=2
gv(cellA)
panobj.super=1 panobj.color=2
gv(cellB)
panobj.color=1 panobj.line=6
drline(0,-52,500,-52)
drline(0,-75,500,-75)
panobj.super=0
}
// syncer doesn't take account of prob of overlaps due to too many spikes stuffed into too
// little time
// q&d synchronization measure
func syncer () { local t0,tt,cnt,width
t0=-1 width=1 cnt=0
for ii=0,tvec.size-1 {
tt=tvec.x[ii]
if (tt>=t0+width) {t0=tt cnt+=1}
}
return 1-cnt/(tstop/width)
}
proc autorun () { local pij
clrveclist()
revec(ind,vec)
for (pij=0.5;pij>=0.1;pij-=0.1) {
distwire(pij)
run()
savevec(ind,tvec)
print pij,syncer()
ind.append(pij) vec.append(syncer())
}
}
proc setdensity () { local ii,S,pij,C,max
max=-0.1 pij=$1
S=nclist.count
rdm.discunif(0,S-1)
vec0.resize(0)
rdmunq(vec0,(1-pij)*S,rdm) // number to set to 0
C = (1-pij) // percent convergence
w=max/C // scale weight up as convergence goes down
setparams()
weight2(w,vec0)
}
// rdmunq(vec,n,rdm) -- augment vec1 by n unique vals from rdm
proc rdmunq () { local n,num,flag,xx,loop,a
a=allocvecs(1)
n=$2 num=0 flag=1 loop=0
mso[a].resize(n*4) // hopefully will get what we want
while (flag) {
mso[a].setrand($o3)
for ii=0,mso[a].size-1 {
xx=mso[a].x[ii]
if (! $o1.contains(xx)) { $o1.append(xx) num+=1 }
if (num==n) { flag=0 break }
}
loop+=1
if (loop==10) { print "rdmunq ERR; inf loop" flag=0 break }
}
dealloc(a)
}
// rdmord (vec,n) randomly ordered numbers 0->n-1 in vec
proc rdmord () { local n,a
a=allocvecs(1)
n=$2
rdm.uniform(0,100)
mso[a].resize(n)
mso[a].setrand(rdm)
mso[a].sortindex($o1)
dealloc(a)
}
// vcount (num,vec)
// for vtr(&x,vec0) if (vcount(x,vec0)>1) print x,vcount(x,vec0)
func vcount () { local a
a=allocvecs(1)
mso[a].where($o2,"==",$1)
return mso[a].size
dealloc(a)
}
// mktray(0,9,1)
// setrange(0,30,tstop-30,ind.min-10,ind.max+10)
// setrange(0,-1)
// g.erase vec[2].line(g,vec[1],1,3) vec[2].mark(g,vec[1],"O",8,2,1)
proc grsy () {
for ltrp(XO,YO,veclist,&y) {
g=boxerl.object(trnum).gl.object(y)
ind.copy(XO) tvec.copy(YO)
showspks()
}
}
order = 1
// cvode.condition_order(order)
//* mapping functions
//** getcnum(CELL_OBJ) return index given cell object
func getcnum () {
sprint(tstr,"%s",$o1)
// sscanf(tstr,"%*[A-Za-z_][%d]",&x)
if (sscanf(tstr,"IntFire2[%d]",&x) != 1) x=-1
return x
}
//** fconn(vec_pre,vec_post) return pre and postsyn indices from nclist
proc fconn () {
$o1.resize(0) $o2.resize(0)
for ii=0,nclist.count-1 {
XO=nclist.object(ii)
if (XO.weight!=0) {
$o1.append(getcnum(XO.pre))
$o2.append(getcnum(XO.syn))
}
}
}
//** showconns() -- show all the connections as line segments
proc showconns () { local pr,po,a,b
a=b=allocvecs(2) b+=1
g.erase
fconn(mso[a],mso[b])
for ii=0,mso[a].size-1 {
pr=mso[a].x[ii] po=mso[b].x[ii]
drawline(pr,po,10)
}
g.flush()
dealloc(a)
}
//** showconv1() -- show convergence to one cell as line seg
proc showconv1 () { local pr,po,id,colr,a,b
a=b=allocvecs(2) b+=1
id=$1
if (numarg()==2) colr=$2 else colr=2
fconn(mso[a],mso[b])
for ii=0,mso[a].size-1 {
pr=mso[a].x[ii] po=mso[b].x[ii]
if (po==id) { drawline(pr,po,10,colr,3) printf("%d ",pr)}
}
print ""
g.flush()
dealloc(a)
}
//** showdiv1() -- show divergence from one cell as line seg
proc showdiv1 () { local pr,po,id,colr,a,b
a=b=allocvecs(2) b+=1
id=$1
if (numarg()==2) colr=$2 else colr=2
fconn(mso[a],mso[b])
for ii=0,mso[a].size-1 {
pr=mso[a].x[ii] po=mso[b].x[ii]
if (pr==id) { drawline(pr,po,10,colr,8) printf("%d ",po) }
}
print ""
g.flush()
dealloc(a)
}
//*** pos (cell_ind,&xi,&yi,cols) -- sets xi, yi to location on the grid
proc pos () { local ci,cols
ci=$1 cols=$4
$&2 = ci%cols $&3=int(ci/cols)
print $&2,$&3
}
func xpos () { return $1%$2 }
func ypos () { return int($1/$2) }
//*** func distn () calc distance
func distn () { local c1,c2,xd,yd,cols
c1=$1 c2=$2 cols=$3
xd=xpos(c1,cols)-xpos(c2,cols)
yd=ypos(c1,cols)-ypos(c2,cols)
return sqrt(xd*xd+yd*yd)
}
//*** distwire(pij)
proc distwire () { local syn,prob,maxdist,cnt,total,C,loop
pij=$1
allsyns = nclist.count
total=pij*allsyns // how many syns to set
rdm.uniform(0,1) // for flipping coin
// maxdist==12.728 for 10x10; mindist=1 (neighbors)
maxdist=0.33*distn(0,ncell-1,sqrt(ncell)) // the full dist from lower left to upper right
maxwt=-0.9/pij // norm wt by convergence
loop=cnt=0 // counters
for i=0,allsyns-1 nclist.object(i).weight = 0 // clear weights
while (cnt<total && loop<4) {
rdmord(vec0,allsyns) // test each synapse in random order
for ii=0,vec0.size-1 {
XO=nclist.object(vec0.x[ii]) // pick a synapse
// max prob of connection is 0.8*(1-mindist/maxdist)~74% for 10x10
// zero prob of diag connection from corner to corner
prob = 1.0*(1-(distn(getcnum(XO.pre),getcnum(XO.syn),sqrt(ncell))/maxdist))
if (rdm.repick<prob) {
XO.weight=maxwt
cnt+=1
}
if (cnt>=total) break // finished
}
}
print cnt,total
if (cnt<total) printf("distwire ERR: target %d, set %d\n",total,cnt)
}
//*** drawline()
proc drawline () { local beg,end,cols,clr,lwid
beg=$1 end=$2 cols=$3
if (numarg()>=4) clr=$4 else clr=4
if (numarg()>=5) lwid=$5 else lwid=1
g.beginline(clr,lwid)
g.line(xpos(beg,cols),ypos(beg,cols))
g.line(xpos(end,cols),ypos(end,cols))
}
//* animation
objref sl,gx[2],drv
sl = new SectionList() // empty list
drv = new Vector(ncell) // drawing vector
Gshp=0
tveclen=0
proc animplot () {
gx[Gshp] = new PlotShape(sl,0)
flush_list.append(gx[Gshp])
ctern(gx[Gshp],0,2)
gx[Gshp].view(1,0,1.1,1.1,500,200,100,100)
drawcells()
}
proc drawcells () { local i,j,ny,nx
gx[Gshp].erase_all
xoff=1.1 yoff=0.1 wdt=0.1
nx=ny=10
for i=0,nx-1 for j=0,ny-1 gx[Gshp].hinton(&drv.x[j*nx+i],(i+.5)*wdt+xoff,(j+.5)*wdt+yoff,wdt/2)
gx[Gshp].size(1, 2.2, 0, 1.2)
gx[Gshp].exec_menu("Shape Plot")
}
proc chkhint () { drv.fill(0) drv.x[$1]=2 gx.flush() }
//* anim()
proc anim () { local tstep,ii,jj,sz
tstep=0.1
sz = ind.size-1
gx[Gshp].exec_menu("Shape Plot")
mso[a].copy(tvec)
mso[a].add(5*tstep) // how many steps to keep it illuminated
drv.fill(0)
ii=jj=0
for (tt=0;tt<=tstop;tt+=tstep) {
print tt
for (;ii<sz && tt>tvec.x[ii];ii+=1) drv.x[animv.indwhere("==",ind.x[ii])]=2
for (;jj<sz && tt> mso[a].x[jj];jj+=1) drv.x[animv.indwhere("==",ind.x[jj])]=0
gx[Gshp].fastflush
// doEvents()
}
}
// END run.hoc
//================================================================
stxshow()
// END batch.hoc
//================================================================