## Set file for zebrafish_cb1r.ode on Fri Apr 9 2021 12 Number of equations and auxiliaries 54 Number of parameters # Numerical stuff 1 nout 40 nullcline mesh 8 Qual RK 70000 total 0.02 DeltaT 0 T0 10000 Transient 500001 Bound 1e-12 DtMin 1 DtMax 0.001 Tolerance 0.001 Abs. Tolerance 0 Max Delay 100 Eigenvector iterates 0.001 Eigenvector tolerance 0.001 Newton tolerance 0 Poincare plane 1e-05 Boundary value tolerance 1e-05 Boundary value epsilon 20 Boundary value iterates 0 Poincare None 1 Poincare variable 1 Poincare sign 0 Stop on Section 0 Delay flag 70000 Current time 70000 Last Time 1 MyStart 1 INFLAG # Delays 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 # Bndry conds 0 0 0 0 0 0 0 0 0 0 0 0 # Old ICs -33.269 MV 0.0048411 MW 3.3 MCA 0.1 IGSYN -29 EV 0.007 EW 4.7 ECA 0.01 ES -29 I2V 0.007 I2W 4.7 I2CA 0.01 I2S # Ending ICs -42.06969743030677 MV 0.001724248105836436 MW 1.436253061725241 MCA 1.721425480577061 IGSYN -31.47687436282752 EV 0.0059545535371928 EW 5.05241651071749 ECA 0.01859797971314407 ES -40.21501955429911 I2V 0.002138952890862532 I2W 9.845073124176153 I2CA 0.007446113435486954 I2S # Parameters -1.2 vf1 18 vf2 12 vf3 17 vf4 4 gca 120 vca 2 gl 8 gk -60 vl -84 vk 0.23 phi 1 cm 1 kca 0.25 gkca 0.005 eps 0.19 mu 10 ca0 31 mbiapp 20000 it0 1 fre 2 dur 0 thetas 4 ss 0.5 gsynmm 0.029 sm2 -50 mvsyn 20 igsynmax 10 mca0 10000 tauagm 4 mgca 0.3 mgkca 0.9 mkca 0 cb1rim 0 cb1rem 0.15 gsynem 0.5 gsynim 43.9 ebiapp 70 eiapp 30 evsyn 15 ealpha 0.3 ebeta 20 ecm 0.5 egsyni 0.005 eeps 36 ibiapp -50 ivsyn 3 ialpha 0.3 ibeta 20 icm 36 i2biapp 8.5 i2alpha 0.046 i2beta 0 cb1rei 0.75 gsynei # Graphics 0.7071097251469876 rm -0.4999999999826661 rm 0.4999958366025516 rm 0.7071038372138505 rm 0.5000041633974484 rm -0.4999999999826661 rm 0 rm 0.7071038372138505 rm 0.7071097251469876 rm 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 -1000 1000 0 0 3DFlag 1 Timeflag 0 Colorflag 0 Type 1 color scale 0 minscale 70000 xmax 0 xmin 39.8256950378418 ymax -53.27024459838867 ymin 12 zmax -12 zmin 35000 2.857142857142857e-05 -6.722274780273438 0.02148321406728305 0 0.08333333333333333 45 Theta 45 Phi 0 xshft 0 yshft 0 zshft 0 xlo -53.27024459838867 ylo 10000 -40 70000 xhi 39.8256950378418 yhi 70000 30 # Transpose variables etc MV 2 n columns 1 n rows 1 row skip 1 col skip 1 row 0 # Coupling stuff for H funs 0 0 0 0 0 0 0 0 0 0 0 0 # Array plot stuff 1 NCols 0 Row 1 50 NRows 8 RowSkip 0 Zmin 1 Zmax # Torus information 0 Torus flag 1=ON 6.283185307179586 Torus period # Range information vf1 -1 eq-range stab col 0 shoot flag 1=on 10 eq-range steps 0 eq_range low 1 eq_range high MV MV 20 Range steps 0 Cycle color 1=on 1 Reset data 1=on 1 Use old I.C.s 1=yes 0 Par1 low 0 Par2 low 1 Par1 high 1 Par2 high vf1 0 BVP side 0 color cycle flag 1=on 10 BVP range steps 0 BVP range low 1 BVP range high RHS etc ... dMV/dT=(MBIAPP-E2MSYN-I2MSYN-MGCA*MINF(MV)*(MV-VCA)-GK*MW*(MV-VK)-GL*(MV-VL)-MGKCA*(MCA/(MCA+CA0))*(MV-VK)-GSYNMM*SM2*(MV-MVSYN))/CM dMW/dT=PHI*(WINF(MV)-MW)/TAUW(MV) dMCA/dT=EPS*(-MU*GCA*MINF(MV)*(MV-VCA)-MKCA*MCA) dIGSYN/dT=(IGSYNMAX/(MCA+MCA0)-IGSYN)/TAUAGM dEV/dT=(EBIAPP+EIAPP*(HEAV(T-IT0)*HEAV(SIN(PI*2*FRE/1000*T)-SIN(5*PI/2-PI*DUR*FRE/1000)))-GCA*MINF(EV)*(EV-VCA)-GK*EW*(EV-VK)-GL*(EV-VL)-GKCA*(ECA/(ECA+CA0))*(EV-VK))/ECM dEW/dT=PHI*(WINF(EV)-EW)/TAUW(EV) dECA/dT=EPS*(-MU*GCA*MINF(EV)*(EV-VCA)-KCA*ECA) dES/dT=EALPHA*(1-ES)*ESINF(EV)-EBETA*ES dI2V/dT=(I2BIAPP-E2ISYN2-GCA*MINF(I2V)*(I2V-VCA)-GK*I2W*(I2V-VK)-GL*(I2V-VL)-GKCA*(I2CA/(I2CA+CA0))*(I2V-VK))/ICM dI2W/dT=PHI*(WINF(I2V)-I2W)/TAUW(I2V) dI2CA/dT=EPS*(-MU*GCA*MINF(I2V)*(I2V-VCA)-KCA*I2CA) dI2S/dT=I2ALPHA*(1-I2S)*ISINF(I2V)-I2BETA*I2S where ... E2MSYN = GSYNEM*IGSYN*(1+CB1REM)*ES*(MV-EVSYN) I2MSYN = GSYNIM*IGSYN*(1-CB1RIM)*I2S*(MV-IVSYN) E2ISYN2 = GSYNEI*IGSYN*ES*(1+CB1REI)*(I2V-EVSYN) User-defined functions: MINF(V) = 0.5*(1+TANH((V-VF1)/VF2)) WINF(V) = 0.5*(1+TANH((V-VF3)/VF4)) TAUW(V) = 1/COSH((V-VF3)/(2*VF4)) ESINF(V) = 1./(1.+EXP(-(V+THETAS)/SS)) ISINF(V) = 1./(1.+EXP(-(V+THETAS)/SS))