/* Use run.hoc to start simulation. Creates a raster plot similar to Figure 2C in "Variability in respiratory rhythm generation: in vitro and in silico models", C Fietkiewicz, GO Shafer, EA Platt, CG Wilson, Communications in Nonlinear Science and Numerical Simulation, Volume 32, March 2016, Pages 158–168 (doi: 10.1016/j.cnsns.2015.08.018).
NOTE: To get more bursts, increase the simulation time.
Author contact: chris.fietkiewicz@case.edu
Author website: http://filer.case.edu/cxf47
*/

//Initializes the parameters necessary for main.hoc to run 
proc initialize() {
	strdef fileSuffix
	setStop = $1
	fileSuffix = $s2
	outputMode = $3
	seed = $4
	tonicToPMweight = $5
	tonicToPMprob = $6
	PMtoPMweight = $7
	PMtoPMprob = $8
	tonicNoise = $9
	tonicToPMrange = $10
	PMtoPMrange = $11
	tonicSeed = $12
	tonicPeriodrange = $13
	numTonic = $14
	numPM = $15
	tonicPeriodMean = $16
	setEK = $17
	setEleak = $18
}