This is the readme for the models associated with the paper:

Raudies F, Zilli EA, Hasselmo ME (2014) Deep belief networks learn
context dependent behavior. PLoS One 9:e93250

This code was contributed by Florian Raudies. Note that the code is
also available at the journal web site
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093250#s5

This directory contains Matlab (R) code to replicate the figures and
simulations from the paper.

Note the approximate length of time that it takes the scripts to run
is included in the comments at the top of the scripts as revealed by
this grep command:

$ grep min Fig*.m | grep about | grep \%
Figure2.m:%   This script will run for about 2 minutes.
Figure3A.m:%   This script will run for about 45 minutes.
Figure3B.m:%   This script will run for about 620 minutes or 10 hours.
Figure3C.m:%   This script will run for about 50 minutes.
Figure3D.m:%   This script will run for about 40 minutes.
Figure3E.m:%   This script will run for about 500 minutes or 8 hours.
Figure3F.m:%   This script will run for about 45 minutes.
Figure3G.m:%   This script will run for about 35 minutes.
Figure3H.m:%   This script will run for about 35 minutes.
Figure4B.m:%   This script will run for about 80 minutes.
Figure4C.m:%   This script will run for about 1,100 minutes or 16 hours.
Figure4D.m:%   This script will run for about 40 minutes.
$ 

Entering Figure2 on the matlab command prompt for example generates
the following figures:


Figure 2B


Figure 2C


Figure 2D


Figure 2E


Figure 2F


Figure 2G

Please report problems, bugs, or suggestions to  fraudies__at__bu__dot__edu
(Replace __at__ by @ and __dot__ by .).

If you use any of the methods or code, please cite our article:
Raudies F, Zilli EA, Hasselmo ME (2014) Deep belief networks learn
context dependent behavior. PLoS One 9:e93250

Copyright (C) 2014 Florian Raudies, Boston University.

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see http://www.gnu.org/licenses/.