# M1NetworkModel
## Description
A multiscale model of mouse primary motor cortex (M1)

Developed using NetPyNE (http://netpyne.org)

## Setup and execution

Requires NEURON with Python and MPI support. 

1. Type or `./compile or the equivalent `nrnivmodl mod`. This should create a directory called either i686 or x86_64, depending on your computer's architecture. 
2. To run type: `./runsim [num_proc]' or the equivalent `mpiexec -np [num_proc] nrniv -python -mpi init.py`

## Overview of file structure:

* /sim/init.py: Main executable; calls functions from other modules. Sets what parameter file to use.

* /sim/netParams.py: Network parameters

* /sim/cfg.py: Simulation configuration

* /data: where the model and simulation data is stored 


For further information please contact: salvadordura@gmail.com