The code provided is part of a computational model that simulates the electrical activity of neurons, specifically focusing on the presynaptic aspects of neuronal firing and synaptic transmission.
The code models the process of action potential generation and the subsequent synaptic release. Action potentials are the fundamental electrical signals through which neurons communicate. These are triggered when the membrane potential of the neuron exceeds a certain threshold, indicated by the thresh
parameter in the code. This aligns with the biological process wherein voltage-gated sodium channels open once a critical voltage is surpassed, leading to a rapid influx of sodium ions and depolarization of the neuron.
The PRESYN
point process in the code is particularly focused on presynaptic mechanisms, which involve the part of the neuron where neurotransmitter release occurs. In a biological context, once an action potential reaches the axon terminal of a presynaptic neuron, it results in the opening of voltage-gated calcium channels. This influx of calcium ions triggers vesicle fusion and neurotransmitter release into the synaptic cleft.
The presynaptic aspect of the code monitors the 'spiking' activity (spk
and spk_internal
) to simulate neurotransmitter release. When the voltage v
exceeds the threshold, a spike is registered (spk = 1
), representing the release of neurotransmitters in a biological neuron. The use of newspike()
reflects this event's occurrence, mirroring the biological process wherein neurotransmitter-filled vesicles release their contents into the synaptic cleft.
The num
parameter suggests the capability to reference or log the occurrence of spikes, which is common in experimental and modeling studies to quantify neural activity. This is akin to experimentally recording spike trains using methods like electrophysiological recordings.
The condition that resets spk_internal
to 0 once the voltage drops below the threshold emulates the reset phase of the action potential. Biologically, this corresponds to the inactivation of sodium channels and activation of potassium channels that repolarize the neuron back to its resting potential, allowing it to fire again.
Overall, the code is an abstraction of a neuronal model that emphasizes presynaptic action potential generation and neurotransmitter release. It captures essential aspects of neuronal activity, focusing on the threshold-dependent nature of action potential firing and replication of presynaptic processes involved in synaptic transmission.