The following explanation has been generated automatically by AI and may contain errors.
The provided code is part of a computational neuroscience model that simulates neural dynamics in a cortical network, with a focus on understanding bistability in such networks. Bistability is a phenomenon where a system can reside in one of two stable states under the same set of conditions, which, in this context, translates to different firing rate states in the brain. ### Biological Basis 1. **Multi-area Model**: The code utilizes a `MultiAreaModel` to simulate a complex network of interconnected brain areas, specifically the visual cortex (V1). The modularity of the network is highlighted through different areas and populations (like excitatory and inhibitory neurons), reflecting the heterogeneity in cortical circuitry. 2. **Connectivity and Indegree**: The `conn_params` variable specifies parameters for synaptic connectivity. For instance, `av_indegree_V1` indicates the average number of synaptic inputs to a neuron in area V1. This indirectly represents the synaptic connections in the cortical column, which are critical for input integration. 3. **External Input and Excitatory Populations**: The `input_params` parameter, with `rate_ext`, simulates external inputs (such as sensory stimuli) that would drive neural activity. The parameter `fac_nu_ext` relates to scaling factors of external inputs on specific cortical layers like 5E and 6E—excitatory neurons in layers 5 and 6—indicating layer-specific activity modulation. 4. **Neuronal Dynamics**: The `neuron_params` linking `V0_mean` and `V0_sd` describe the baseline membrane potential and its standard deviation, representing intrinsic neuronal properties. 5. **Simulating Bi-stable States**: Two distinct states are modeled: a low-activity state (`kappa = 1`) and a high-activity state (`kappa = 1.125`). These correspond to two stable population firing rates of the cortical network under the same conditions, showing how small changes in parameters can lead to significant shifts in network activity. 6. **Activity Analysis**: The analysis focuses on the distribution and rate of neuronal firing across different areas and populations within the model. This is reflective of real biological investigations into neural circuit function, where analyzing firing rates can reveal insights into cognitive states or processing capabilities. This code effectively models the balance of neural excitation and inhibition, connectivity patterns, and plasticity within the cortical networks of the brain. Through computational simulations, it provides insight into how different neural circuits can manifest stable patterns of activity under similar biological conditions, a phenomenon that is crucial for understanding cognitive functions like perception and decision-making.