The provided code models an NMDA synapse incorporating elements of synaptic depression. Below, I describe the specific biological concepts represented in this code:
NMDA Receptor and AMPA Receptor: While the title mentions NMDA, the code specifies AMPA receptors, a common receptor in excitatory synaptic transmission. AMPA receptors are ligand-gated ion channels that mediate fast synaptic transmission in the central nervous system by allowing Na+ and K+ influx, which leads to depolarization.
Synaptic Currents: The keyword NONSPECIFIC_CURRENT iampa
simulates the ionic current through AMPA receptors, which contributes to changes in post-synaptic potential.
Depression and Plasticity: Synaptic depression is a form of short-term synaptic plasticity where the synaptic efficacy decreases upon repetitive stimulation. This could be represented by the parameters gampa
and its decay with time (tau_ampa
), modeling how the conductance changes over time and decreases after activation.
Time Constants and Spiking Parameters: The model includes parameters like tau_ampa
for the decay time constant, del
for the delay before synaptic activation, Tspike
for time interval between spikes, and Nspike
for the number of spikes. These parameters are critical in representing how synaptic currents evolve and how frequently stimulations occur, influencing synaptic depression.
Conductance Change (gampa
): This represents the synaptic conductance which changes according to the receptor activation governed by the rise and fall of current (iampa
). The conductance value is crucial for translating synaptic input into post-synaptic potentials, affecting excitability and synaptic efficacy.
Maximum Conductance (gmax
): The gmax
parameter denotes the maximum possible conductance through the AMPA receptors, serving as a cap for synaptic strength under maximum stimulation.
v
and local_v
): The membrane potential variables show the voltage across the membrane, which is updated during synaptic events and used to compute synaptic currents. The change in these potentials impacts neuronal excitability and spike generation.This code fragment captures the interaction between ionic currents through AMPA receptors and synaptic plasticity phenomena, specifically depression, in a neuron model. This abstraction allows neuroscientists to simulate and study the dynamic processes that regulate synaptic strength and plasticity in neuronal networks.