Soltesz I, Armstrong C, Raikov I, Bezaire M, Burk K. (2016). SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON bioRxiv.

See more from authors: Soltesz I · Armstrong C · Raikov I · Bezaire M · Burk K

References and models cited by this paper

Armstrong C et al. (2016). Target-selectivity of parvalbumin-positive interneurons in layer II of medial entorhinal cortex in normal and epileptic animals. Hippocampus. 26 [PubMed]

Ascoli GA, De Schutter E, Kennedy DN. (2003). An information science infrastructure for neuroscience. Neuroinformatics. 1 [PubMed]

Beltrame F, Koslow SH. (1999). Neuroinformatics as a megascience issue. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society. 3 [PubMed]

Bezaire MJ. (). Simtracker - Parallel NEURON Network Model Simulation Management & Analysis Simtooldb, accessed 2016.

Bezaire MJ. (2016). Hippocampal CA1 Network In Parallel NEURON With Spontaneous Theta, Gamma: Full Scale & Network Clamp Modeldb, 2016A.

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

Carnevale NT, Hines M. (). Research reports that have used NEURON (accessed Sep 28th, 2015).

Churchland AK, Abbott LF. (2016). Conceptual and technical advances define a key moment for theoretical neuroscience. Nature neuroscience. 19 [PubMed]

Davison A. (2012). Automated capture of experiment context for easier reproducibility in computational research Computing In Science And Engineering. 14

Ferguson AR, Nielson JL, Cragin MH, Bandrowski AE, Martone ME. (2014). Big data from small data: data-sharing in the 'long tail' of neuroscience. Nature neuroscience. 17 [PubMed]

Gleeson P et al. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS computational biology. 6 [PubMed]

Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hines ML, Carnevale NT. (2008). Translating network models to parallel hardware in NEURON. Journal of neuroscience methods. 169 [PubMed]

Kandel ER, Markram H, Matthews PM, Yuste R, Koch C. (2013). Neuroscience thinks big (and collaboratively). Nature reviews. Neuroscience. 14 [PubMed]

Mattioni M, Cohen U, Le Novère N. (2012). Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. Frontiers in neuroinformatics. 6 [PubMed]

McDougal RA, Bulanova AS, Lytton WW. (2016). Reproducibility in Computational Neuroscience Models and Simulations. IEEE transactions on bio-medical engineering. 63 [PubMed]

Merali Z. (2010). Computational science: ...Error. Nature. 467 [PubMed]

Poolos NP, Migliore M, Johnston D. (2002). Pharmacological upregulation of h-channels reduces the excitability of pyramidal neuron dendrites. Nature neuroscience. 5 [PubMed]

Soltesz I, Raikov I, Bezaire MJ, Burk K, Vyas D. (2015). Simulation results from full scale and rationally reduced network models of the isolated hippocampal CA1 subfield in rat CRCNS.org.

Stevens JL, Elver M, Bednar JA. (2013). An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook. Frontiers in neuroinformatics. 7 [PubMed]

Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC. (2014). NeuroElectro: a window to the world's neuron electrophysiology data. Frontiers in neuroinformatics. 8 [PubMed]

References and models that cite this paper

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

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