Brette R, Goodman DF. (2011). Vectorized algorithms for spiking neural network simulation. Neural computation. 23 [PubMed]

• Vectorized algorithms for spiking neural network simulation (Brette and Goodman 2011) [Model]

Carnevale NT, Rosenthal S. (1992). Kinetics of diffusion in a spherical cell. I. No solute buffering. Journal of neuroscience methods. 41 [PubMed]

Diesmann M, Gewaltig M-O. (2007). NEST (Neural Simulation Tool) Scholarpedia. 2

Goodman DF, Brette R. (2009). The brian simulator. Frontiers in neuroscience. 3 [PubMed]

HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]

• Squid axon (Hodgkin, Huxley 1952) (NEURON) [Model]
• Squid axon (Hodgkin, Huxley 1952) (SNNAP) [Model]
• Squid axon (Hodgkin, Huxley 1952) (LabAXON) [Model]
• Squid axon (Hodgkin, Huxley 1952) (SBML, XPP, other) [Model]
• Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language) [Model]

Hines M. (1984). Efficient computation of branched nerve equations. International journal of bio-medical computing. 15 [PubMed]

Hines M et al. (2016). Leveraging a Cluster-Booster Architecture for Brain-Scale Simulations.

Hines M, Kumar S, Schürmann F. (2011). Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Frontiers in computational neuroscience. 5 [PubMed]

• Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011) [Model]

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Hines ML, Markram H, Schürmann F. (2008). Fully implicit parallel simulation of single neurons. Journal of computational neuroscience. 25 [PubMed]

• Fully Implicit Parallel Simulation of Single Neurons (Hines et al. 2008) [Model]

Kandel ER, Markram H, Matthews PM, Yuste R, Koch C. (2013). Neuroscience thinks big (and collaboratively). Nature reviews. Neuroscience. 14 [PubMed]

Korf RE. (1998). A complete anytime algorithm for number partitioning Artif Intell. 106

Kozloski J, Wagner J. (2011). An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Frontiers in neuroinformatics. 5 [PubMed]

Kumar S, Heidelberger P, Chen D, Hines M. (2010). Optimization of Applications with Non-blocking Neighborhood Collectives via Multisends on the Blue Gene/P Supercomputer. Proceedings. IPDPS (Conference). 2010 [PubMed]

Kumbhar P et al. (2019). CoreNEURON : An Optimized Compute Engine for the NEURON Simulator. Frontiers in neuroinformatics. 13 [PubMed]

Markram H, Gerstner W, Sjöström PJ. (2012). Spike-timing-dependent plasticity: a comprehensive overview. Frontiers in synaptic neuroscience. 4 [PubMed]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Zenke F, Gerstner W. (2014). Limits to high-speed simulations of spiking neural networks using general-purpose computers. Frontiers in neuroinformatics. 8 [PubMed]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]