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Model properties
Properties autocomplete as you type or you can use the down arrow to see
the full list.
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selections.
Model type:
Agent-based model
Axon
Boolean network
Channel/Receptor
Connectionist Network
Dendrite
Electrogenic pump
Extracellular
Glia
Molecular Network
Multilayer Hierarchical Gaussian filter (HGF)
Muscle model and vibrissa biomechanics
Network growth
Neural mass
Neuromuscular Junction
Neuron or other electrically excitable cell
Predictive Coding Network
Realistic Network
Spiking neural network
Statistical learning model
Synapse
Neurons:
Antennal lobe olfactory projection neuron (insect)
Cerebellum Purkinje GABA cell
Cerebellum interneuron Golgi GABA cell
Cerebellum interneuron granule GLU cell
Cerebellum interneuron stellate GABA cell
Cochlea hair inner GLU cell
Cochlea hair outer GLU cell
Cochlear nucleus bushy GLU cell
Cochlear nucleus octopus GLU cell
Cochlear nucleus pyramidal/fusiform GLU cell
Dentate gyrus granule GLU cell
Globus pallidus principal GABA cell
Hippocampus CA1 interneuron basket GABA cell
Hippocampus CA1 interneuron oriens alveus GABA cell
Hippocampus CA1 pyramidal GLU cell
Hippocampus CA3 interneuron basket GABA cell
Hippocampus CA3 interneuron oriens alveus GABA cell
Hippocampus CA3 pyramidal GLU cell
Hippocampus CA4 pyramidal GLU cell
Locus ceruleus principal NE cell
Neocortex L2/3 pyramidal GLU cell
Neocortex L5/6 pyramidal GLU cell
Neocortex M1 L2/6 pyramidal intratelencephalic GLU cell
Neocortex M1 L4 stellate GLU cell
Neocortex M1 L5B pyramidal pyramidal tract GLU cell
Neocortex M1 L6 pyramidal corticothalamic GLU cell
Neocortex M1 interneuron basket PV GABA cell
Neocortex M1 interneuron bipolar VIP/CR GABA cell
Neocortex M1 interneuron chandelier SOM GABA cell
Neocortex U1 L2/6 pyramidal intratelencephalic GLU cell
Neocortex U1 L4 stellate GLU cell
Neocortex U1 L5B pyramidal pyramidal tract GLU cell
Neocortex U1 L6 pyramidal corticalthalamic GLU cell
Neocortex U1 interneuron basket PV GABA cell
Neocortex U1 interneuron bipolar VIP/CR GABA cell
Neocortex U1 interneuron chandelier SOM GABA cell
Neocortex V1 L4 stellate GLU cell
Neocortex V1 L5B pyramidal pyramidal tract GLU cell
Neocortex V1 interneuron basket PV GABA cell
Neocortex V1 interneuron bipolar VIP/CR GABA cell
Neocortex V1 interneuron chandelier SOM GABA cell
Neostriatum interneuron ACh cell
Neostriatum interneuron SOM/NOS GABA cell
Neostriatum interneuron gaba/parvalbumin GABA cell
Neostriatum medium spiny direct pathway GABA cell
Neostriatum medium spiny indirect pathway GABA cell
Olfactory bulb main interneuron granule MC GABA cell
Olfactory bulb main interneuron granule TC GABA cell
Olfactory bulb main interneuron periglomerular GABA cell
Olfactory bulb main interneuron tufted external GABA cell
Olfactory bulb main mitral GLU cell
Olfactory bulb main tufted middle GLU cell
Olfactory bulb short axon deep GABA cell
Olfactory receptor GLU cell
Piriform cortex anterior interneuron deep layer GABA cell
Piriform cortex anterior interneuron layer II GABA cell
Piriform cortex anterior interneuron superficial GABA cell
Piriform cortex anterior pyramidal deep GLU cell
Piriform cortex anterior pyramidal layer II GLU cell
Piriform cortex anterior semilunar GLU cell
Piriform cortex posterior interneuron deep GABA cell
Piriform cortex posterior interneuron layer ll GABA cell
Piriform cortex posterior interneuron superficial GABA cell
Piriform cortex posterior pyramidal deep GLU cell
Piriform cortex posterior pyramidal layer II GLU cell
Piriform cortex posterior semilunar GLU cell
Raphe nuclei principal 5HT cell
Retina amacrine ACh cell
Retina bipolar GLU cell
Retina ganglion GLU cell
Retina horizontal GABA cell
Retina photoreceptor cone GLU cell
Retina photoreceptor rod GLU cell
Septum principal ACh cell
Spinal cord lumbar Interneuron 1a GLY cell
Spinal cord lumbar motor neuron alpha ACh cell
Spinal cord lumbar motor neuron gamma ACh cell
Substantia nigra pars compacta DA cell
Substantia nigra pars reticulata principal GABA cell
Subthalamic nucleus principal GABA cell
Thalamus geniculate nucleus/lateral principal GLU cell
Thalamus reticular nucleus GABA cell
Vestibular organ hair GLU cell
Currents:
ATP-senstive potassium current
Ca pump
Channelrhodopsin (ChR)
I A
I A, slow
I ANO2
I C
I CAN
I CNG
I Ca SOCC
I Ca,p
I Calcium
I Chloride
I Cl, leak
I Cl,Ca
I K
I K,Ca
I K,leak
I Krp
I L high threshold
I M
I MI
I Mixed
I N
I Na, leak
I Na, slow inactivation
I Na,p
I Na,t
I Potassium
I Q
I R
I Sodium
I T low threshold
I TRPM8
I h
I p,q
I trp
IK Bkca
IK Skca
I_AHP
I_HCO3
I_HERG
I_K,Na
I_KD
I_KHT
I_KLT
I_Ks
I_Na,Ca
I_SERCA
KCC1
KCC2
KCNQ1
Kir
Kir, inactivating
Kir2 leak
Late Na
NBC
NKCC1
Na+-glutamate transporter
Na/Ca exchanger
Na/K pump
Osmosis-driven water flux
TASK channel
Neurotransmitters:
ATP
Acetylcholine
Amino Acids
Angiotensin
CO
CabTRP 1a
Dopamine
Dynorphin
Endocannabinoid
Ephinephrine
Gaba
Gases
Glutamate
Glycine
Histamine
Ions
Monoamines
NO
Neurotrophin
Norephinephrine
Peptides
Serotonin
Somatostatin
Zn2+
neuropeptide Y
Receptors:
5-HT1
5-HT2
5-HT3
5-HT4
AMPA
AT1R
Adrenergic
Alpha
Alpha1
Alpha2
Amino Acid Receptors
Beta
CO
Cholinergic Receptors
D1
D2
D5
Dopaminergic Receptor
Dynorphin
Gaba
GabaA
GabaB
Gaseous Receptors
Glutamate
Glycine
H1
H2
H3R
Histamine
IP3
Ion Receptors
Kainate
M1
M2
M3
M4
M5
Mechanoreceptors
Monoamine Receptors
Muscarinic
NMDA
NO
Nicotinic
Olfactory Receptors
Opsins
P2X3
Peptide Receptors
Sensory Receptors
Serotonin
TrpM3
Zn2+
mGluR
mGluR1
mGluR2
mGluR3
mGluR4
mGluR5
mGluR6
mGluR7
mGluR8
Genes:
CLC-2 CLCN2
Cav1.1 CACNA1S
Cav1.2 CACNA1C
Cav1.3 CACNA1D
Cav2.1 CACNA1A
Cav2.2 CACNA1B
Cav3.1 CACNA1G
Cav3.2 CACNA1H
Cav3.3 CACNA1I
D1 DRD1A
D2 DRD2
D5 DRD5
FMR1 FMRP
HCN Cnga1
HCN1
HCN2
HCN3
HCN4
HERG KCNH2
IRK
KCa1.1 KCNMA1
KCa2.1 KCNN1
KCa2.2 KCNN2
KCa3.1 KCNN4
Kir2.1 KCNJ2
Kir2.2 KCNJ12
Kir2.3 KCNJ4
Kir2.4 KCNJ14
Kir6.2 KCNJ11
Kv1.1 KCNA1
Kv1.2 KCNA2
Kv1.3 KCNA3
Kv1.4 KCNA4
Kv1.5 KCNA5
Kv1.9 Kv7.1 KCNQ1
Kv2.1 KCNB1
Kv3.1 KCNC1
Kv3.3 KCNC3
Kv3.4 KCNC4
Kv4.1 KCND1
Kv4.2 KCND2
Kv4.3 KCND3
Kv7.4 KCNQ4
Kvb2 KCNAB2
NR2A GRIN2A
NR2B GRIN2B
Nav SCN1B
Nav1.1 SCN1A
Nav1.2 SCN2A
Nav1.3 SCN3A
Nav1.4 SCN4A
Nav1.5 SCN5A
Nav1.6 SCN8A
Nav1.7 SCN9A
Nav1.8 SCN10A
Nav1.9 SCN11A SCN12A
Nav2.1
Nav2.2
Nav2.3 SCN7A
Nav3.1
PMCA ATP2B2
nAChR alpha 7
Concepts:
Action Potential Initiation
Action Potentials
Action Selection/Decision Making
Active Dendrites
Activity Patterns
Acute hepatic encephalopathy (AHE)
Addiction
Aging/Alzheimer`s
Alcohol Use Disorder
Amblyopia
Analog coding
Anoxic depolarization
Apoptosis
Attractor Neural Network
Audition
Autism spectrum disorder
Axonal Action Potentials
Balanced networks
Behavioral switching
Beta oscillations
Bifurcation
Binocular energy model/Stereopsis
Biofeedback
Bipolar Disorder (BP)
Boolean network
Borderline Personality Disorder (BPD)
Brain Rhythms
Brain Tumor
Brugada
Bursting
COVID-19
CREB
Calcium dynamics
Calcium waves
Cardiac pacemaking
Cardiac-related electrode motion
Cellular volume dynamics
Chloride regulation
Circadian Rhythms
Coincidence Detection
Color selectivity
Complementary and alternative medicine
Conductance distributions
Conductances estimation
Conduction failure
Connectivity matrix
Context integration
Contrast-gain control
Current Dipole
Cytokine Signaling
Deep brain stimulation
Delay
Dendritic Action Potentials
Dendritic Bistability
Depolarization block
Depression
Detailed Neuronal Models
Development
Direction Selectivity
Disparity estimation
Double cable
Drug binding
Duration Selectivity
Dynamic extracellular concentrations
Early evolution
Effective Optokinetic Response (OKR)
Electrical-chemical
Electrodiffusion
Electrotonus
Eligibility traces
Energy consumption
Envelope synthesis
Ephaptic coupling
Epilepsy
Equivalent PI circuit
Erythromelalgia
Evoked LFP
Evolution
Excitability
Extracellular Fields
Eyeblink Conditioning (EBC)
Facilitation
Feature selectivity
G-protein coupled
Gain-bandwidth product (GBWP)
Gamma oscillations
Grid cell
Hallucinations
Heart disease
Hebbian plasticity
Homeostasis
Homeostatic plasticity
Huntington's
Impedance
Influence of Dendritic Geometry
Information transfer
Intermittent block
Intracortical Microstimulation
Intrinsic plasticity
Invertebrate
Ion Channel Kinetics
Kesten Process
Laminar Connectivity
Langevin process
Learning
Locking, mixed mode
Long-QT
Long-term Synaptic Plasticity
Magnetic stimulation
Magnetoencephalography
Maintenance
Major Depression Disease (MDD)
Markov-type model
Maximum entropy models
Membrane Properties
Memory
Methods
Motion Detection
Motor control
Multiple sclerosis
Multiscale
Negative feedback
Neurite growth
Neurite loss
Neurogenesis
Neuromodulation
Neurotransmitter dynamics
Nociception
Noise Sensitivity
Olfaction
Orientation selectivity
Oscillations
Pacemaking mechanism
Pain processing
Parameter Fitting
Parameter sensitivity
Paranoia
Parkinson's
Pathophysiology
Pattern Recognition
Pattern Separation
Perceptual Categories
Persistent activity
Phase Response Curves
Phase interference
Phenomenological inductance
Place cell/field
Post-Tetanic Potentiation
Posture and locomotion
Potassium buffering
Ramping
Rate-coding model neurons
Reaction-diffusion
Rebound firing
Receptive field
Recurrent Discharge
Reinforcement Learning
Reliability
Reservoir Computing
Respiratory control
Reward-modulated STDP
STDP
Schizophrenia
Sensory coding
Sensory processing
Sequence learning
Short-term Synaptic Plasticity
Signaling pathways
Simplified Models
Sleep
Sleep-Wake transition
Sodium pump
Soma-dendrite cross-talk
Spatial Navigation
Spatial connectivity
Spatio-temporal Activity Patterns
Spike Frequency Adaptation
Spindles
Spreading depolarization
Spreading depression
Stimulus selectivity
Stochastic simulation
Storage/recall
Structural plasticity
Stuttering
Subthreshold signaling
Synaptic Amplification
Synaptic Convergence
Synaptic Integration
Synaptic Plasticity
Synaptic Tagging and Capture
Synaptic noise
Synaptic-input statistic
Synchronization
Temperature
Temporal Coding
Temporal Pattern Generation
Therapeutics
Theta oscillations
Timothy Syndrome
Top-down input
Touch
Triggered activity
Tutorial/Teaching
Two-port analysis of electrotonus
Unsupervised Learning
Vestibular
Vision
Voltage transfer ratio
Volume transmission
Whisking
Winner-take-all
Working memory
unscented Kalman filter
Region or organism:
Amygdala
Aplysia
Auditory brainstem
Auditory cortex
Barrel cortex
Basal ganglia
Blowfly (Calliphora vicina)
Brainstem
Cerebellum
Dentate gyrus
Drosophila
Egg-laying circuit
Enteric nervous system
Entorhinal cortex
Generic
Globus pallidus externa (GPe)
Goldfish
Hawkmoth Deilephila elpenor
Helix pomatia (snail)
Hippocampus
Honeybee (Apis mellifera)
Human
Inferior Colliculus
Lamprey, Spinal cord, Brainstem
Leech
Locust
Medial Septum
Mouse
Mushroom body
Neocortex
Olfactory bulb
Olfactory cortex
Optic lobe/Praying Mantis
Prefrontal cortex (PFC)
Retina
Spinal motoneuron
Stomatogastric ganglion
Striatum
Subthalamic Nucleus
Superior colliculus
Thalamus
Tritonia
Turtle cortex
Turtle vestibular system
Unknown
Visual cortex
Xenopus
Simulation environment:
AnimatLab v1
Arbor
BETSE (web link to model)
BioNet (web link to model)
BioPAX
BioPAX (web link to model)
BluePyOpt
Brain Dynamics Toolbox
Brain Dynamics Toolbox (web link to model)
Brian
Brian (web link to method)
Brian (web link to model)
Brian 2
Brian 2 (web link to model)
C or C++ program
C or C++ program (web link to model)
C#
CNrun
COMSOL
COMSOL (web link to model)
CONTENT
COPASI
CSIM
CSIM (web link to model)
CalC Calcium Calculator
CalC Calcium Calculator (web link to model)
Catacomb
Catacomb (web link to model)
CellDesigner
CellExcite
CellExcite (web link to model)
CellML
CellML (web link to model)
Chemesis
Cx3Dp
Cython
DynaSim
DynaSim (web link to model)
Dynamics Solver
EDLUT
ERNST (Event Related Neuronal Simulation Tool)
ERNST (Event Related Neuronal Simulation Tool) (web link to model)
Emergent/PDP++
FORTRAN
FORTRAN (web link to a model)
GENESIS
GENESIS (web link to model)
GNUstep NeXTStep/OpenStep
HSPICE
IChMASCOT
IDL
IGOR Pro
IGOR Pro (web link to model)
IonChannelLab
Java
Java (web link to model)
Javascript
Javascript (web link to model)
Julia
Julia (web link to model)
KInNeSS
KInNeSS (web link to model)
KNPsim (web link to method)
L-Neuron
LCG
LFPy
LFPy (web link to model)
LibRoadRunner
Lua
MATLAB
MATLAB (web link to model)
MCell
MOOSE/PyMOOSE
MOOSE/PyMOOSE (web link to method)
MVASpike
MadSim
Mathematica
Mathematica (web link to model)
MySQL
MySQL (web link to model)
NCS
NEST
NEST (web link to model)
NEURON
NEURON (web link to model)
NEURONPM
NEURONPM (web link to tool)
NSL
NSM
NSM (web link to model)
Nengo
Neosim
NetPyNE
Network
NeuGen
Neural Field Simulator
NeuroGPU
NeuroML
NeuroML (web link to model)
NeuroRD
NeuronC
NeuronC (web link to model)
NeuronetExperimenter
NeuronetExperimenter (web link to model)
Neuronify
Neuronify (web link to model)
Neuronvisio
Neuronvisio (web link to model)
Norns - Neural Net Studio
Octave
PCSIM
PGENESIS
PSICS
PSpice
Pascal
Pascal (web link to model)
Pascal/Delphi
PyNN
Python
Python (web link to model)
QBasic/QuickBasic/Turbo Basic/VBA
QuB
R
R (web link to model)
ReMoto
ReMoto (web link to model)
SABER
SBML
SBML (web link to model)
SNNAP
SPLIT
STEPS
STEPS (web link to model)
SciLab
Scilab (web link to model)
Simulink
Snnet
Snudda
Snudda (web link to model)
SpiNNaker
Sspice Symbolic SPICE
Surf-Hippo
Synthesis
T2N
T2N (web link to model)
The Virtual Brain
The Virtual Brain (web link to model)
The Virtual Mouse Brain (TVMB)
The Virtual Mouse Brain (TVMB) (web link to model)
Topographica
Topographica (web link to model)
Trentool
VERTEX
Virtual Cell
Virtual Cell (web link to model)
XML
XML (web link to model)
XNBC
XPP
XPP (web link to model)
Yale HMM
cirsiumNeuron
cirsiumNeuron (web link to model)
eFEL
neuroConstruct
neuroConstruct (web link to model)
neurolib
neurolib (web link to model)
ngspice
pHHotoreceptor
parplex