Dangerfield CE, Kay D, Burrage K. (2012). Modeling ion channel dynamics through reflected stochastic differential equations Physical review. E, Statistical, nonlinear, and soft matter physics. 85 [PubMed]

• Reflected SDE Hodgkin-Huxley Model (Dangerfield et al. 2012) [Model]

Denizot A, Arizono M, Nägerl UV, Soula H, Berry H. (2019). Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLoS computational biology. 15 [PubMed]

• Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019) [Model]

Kilinc D, Demir A. (2015). Simulation of noise in neurons and neuronal circuits Proceedings of the IEEE/ACM international conference on computer-aided design (ICCAD).

• A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Kilinc D, Demir A. (2017). Noise in Neuronal and Electronic Circuits: A General Modeling Framework and Non-Monte Carlo Simulation Techniques. IEEE transactions on biomedical circuits and systems. 11 [PubMed]

• A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Kilinc D, Demir A. (2018). Spike timing precision of neuronal circuits. Journal of computational neuroscience. 44 [PubMed]

• A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Orio P, Soudry D. (2012). Simple, fast and accurate implementation of the diffusion approximation algorithm for stochastic ion channels with multiple states. PloS one. 7 [PubMed]

• Simple and accurate Diffusion Approximation algor. for stochastic ion channels (Orio & Soudry 2012) [Model]

Pezo D, Soudry D, Orio P. (2014). Diffusion approximation-based simulation of stochastic ion channels: which method to use? Frontiers in computational neuroscience. 8 [PubMed]

• Comparison of DA-based Stochastic Algorithms (Pezo et al. 2014) [Model]