Williams AH, O'Donnell C, Sejnowski TJ, O'Leary T. (2016). Dendritic trafficking faces physiologically critical speed-precision tradeoffs. eLife. 5 [PubMed]

See more from authors: Williams AH · O'Donnell C · Sejnowski TJ · O'Leary T

References and models cited by this paper

Aakalu G, Smith WB, Nguyen N, Jiang C, Schuman EM. (2001). Dynamic visualization of local protein synthesis in hippocampal neurons. Neuron. 30 [PubMed]

Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Bading H. (2000). Transcription-dependent neuronal plasticity: The nuclear calcium hypothesis. European journal of biochemistry. 267 [PubMed]

Bhalla US. (2011). Trafficking motifs as the basis for two-compartment signaling systems to form multiple stable states. Biophysical journal. 101 [PubMed]

Bhalla US. (2014). Molecular computation in neurons: a modeling perspective. Current opinion in neurobiology. 25 [PubMed]

Block SM, Goldstein LS, Schnapp BJ. (1990). Bead movement by single kinesin molecules studied with optical tweezers. Nature. 348 [PubMed]

Bloodgood BL, Sharma N, Browne HA, Trepman AZ, Greenberg ME. (2013). The activity-dependent transcription factor NPAS4 regulates domain-specific inhibition. Nature. 503 [PubMed]

Bressloff P, Newby J. (2009). Directed intermittent search for hidden targets New Journal of Physics. 11

Bressloff PC. (2006). Stochastic model of protein receptor trafficking prior to synaptogenesis. Physical review. E, Statistical, nonlinear, and soft matter physics. 74 [PubMed]

Bressloff PC, Earnshaw BA. (2007). Diffusion-trapping model of receptor trafficking in dendrites. Physical review. E, Statistical, nonlinear, and soft matter physics. 75 [PubMed]

Bressloff PC, Newby JM. (2013). Stochastic models of intracellular transport Reviews of Modern Physics. 85

Buxbaum AR, Haimovich G, Singer RH. (2015). In the right place at the right time: visualizing and understanding mRNA localization. Nature reviews. Molecular cell biology. 16 [PubMed]

Buxbaum AR, Wu B, Singer RH. (2014). Single ß-actin mRNA detection in neurons reveals a mechanism for regulating its translatability. Science (New York, N.Y.). 343 [PubMed]

Buxbaum AR, Yoon YJ, Singer RH, Park HY. (2015). Single-molecule insights into mRNA dynamics in neurons. Trends in cell biology. 25 [PubMed]

Cajigas IJ et al. (2012). The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging. Neuron. 74 [PubMed]

Caspi A, Granek R, Elbaum M. (2000). Enhanced diffusion in active intracellular transport. Physical review letters. 85 [PubMed]

Ch'ng TH, Martin KC. (2011). Synapse-to-nucleus signaling. Current opinion in neurobiology. 21 [PubMed]

Deisseroth K, Mermelstein PG, Xia H, Tsien RW. (2003). Signaling from synapse to nucleus: the logic behind the mechanisms. Current opinion in neurobiology. 13 [PubMed]

Doyle M, Kiebler MA. (2011). Mechanisms of dendritic mRNA transport and its role in synaptic tagging. The EMBO journal. 30 [PubMed]

Dynes JL, Steward O. (2007). Dynamics of bidirectional transport of Arc mRNA in neuronal dendrites. The Journal of comparative neurology. 500 [PubMed]

Farris S, Lewandowski G, Cox CD, Steward O. (2014). Selective localization of arc mRNA in dendrites involves activity- and translation-dependent mRNA degradation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Fedotov S, Méndez V. (2008). Non-Markovian model for transport and reactions of particles in spiny dendrites. Physical review letters. 101 [PubMed]

Flavell SW, Greenberg ME. (2008). Signaling mechanisms linking neuronal activity to gene expression and plasticity of the nervous system. Annual review of neuroscience. 31 [PubMed]

Frey U, Morris RG. (1997). Synaptic tagging and long-term potentiation. Nature. 385 [PubMed]

Frey U, Morris RG. (1998). Weak before strong: dissociating synaptic tagging and plasticity-factor accounts of late-LTP. Neuropharmacology. 37 [PubMed]

Gagnon JA, Mowry KL. (2011). Molecular motors: directing traffic during RNA localization. Critical reviews in biochemistry and molecular biology. 46 [PubMed]

Gardiner C. (2009). Stochastic methods: a handbook for the natural and social sciences (Springer series in synergetics). 4th edn

Grant BD, Donaldson JG. (2009). Pathways and mechanisms of endocytic recycling. Nature reviews. Molecular cell biology. 10 [PubMed]

Green WN, Montgomery JM, Zheng N, Jeyifous O, Munro C. (2015). Synaptic activity regulates AMPA receptor trafficking through different recycling pathways eLife. 4

Greer PL, Greenberg ME. (2008). From synapse to nucleus: calcium-dependent gene transcription in the control of synapse development and function. Neuron. 59 [PubMed]

Han EB, Heinemann SF. (2013). Distal dendritic inputs control neuronal activity by heterosynaptic potentiation of proximal inputs. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33 [PubMed]

Hancock WO. (2014). Bidirectional cargo transport: moving beyond tug of war. Nature reviews. Molecular cell biology. 15 [PubMed]

Hines M. (1984). Efficient computation of branched nerve equations. International journal of bio-medical computing. 15 [PubMed]

Hines ML, Davison AP, Muller E. (2009). NEURON and Python. Frontiers in neuroinformatics. 3 [PubMed]

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]

Hirokawa N, Niwa S, Tanaka Y. (2010). Molecular motors in neurons: transport mechanisms and roles in brain function, development, and disease. Neuron. 68 [PubMed]

Hoffman DA, Magee JC, Colbert CM, Johnston D. (1997). K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature. 387 [PubMed]

Holt CE, Schuman EM. (2013). The central dogma decentralized: new perspectives on RNA function and local translation in neurons. Neuron. 80 [PubMed]

Jones E, Oliphant T, Peterson P. (2001). SciPy: Open Source Scientific Tools for Python. http://www.scipy.org/.

Kandel ER. (2001). The molecular biology of memory storage: a dialogue between genes and synapses. Science (New York, N.Y.). 294 [PubMed]

Kang H, Schuman EM. (1996). A requirement for local protein synthesis in neurotrophin-induced hippocampal synaptic plasticity. Science (New York, N.Y.). 273 [PubMed]

Kao DI, Aldridge GM, Weiler IJ, Greenough WT. (2010). Altered mRNA transport, docking, and protein translation in neurons lacking fragile X mental retardation protein. Proceedings of the National Academy of Sciences of the United States of America. 107 [PubMed]

Keener J, Sneyd J. (1998). Mathematical Physiology Interdisciplinary Applied Mathematics. 8

Kim S, Martin KC. (2015). Neuron-wide RNA transport combines with netrin-mediated local translation to spatially regulate the synaptic proteome. eLife. 4 [PubMed]

Klumpp S, Lipowsky R. (2005). Cooperative cargo transport by several molecular motors. Proceedings of the National Academy of Sciences of the United States of America. 102 [PubMed]

Lyles V, Zhao Y, Martin KC. (2006). Synapse formation and mRNA localization in cultured Aplysia neurons. Neuron. 49 [PubMed]

Magee JC. (1998). Dendritic hyperpolarization-activated currents modify the integrative properties of hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Migliore M, Migliore R. (2012). Know your current I(h): interaction with a shunting current explains the puzzling effects of its pharmacological or pathological modulations. PloS one. 7 [PubMed]

Mironov SL. (2007). ADP regulates movements of mitochondria in neurons. Biophysical journal. 92 [PubMed]

Moga DE et al. (2004). Activity-regulated cytoskeletal-associated protein is localized to recently activated excitatory synapses. Neuroscience. 125 [PubMed]

Müller MJ, Klumpp S, Lipowsky R. (2008). Tug-of-war as a cooperative mechanism for bidirectional cargo transport by molecular motors. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

Newby J, Bressloff PC. (2010). Local synaptic signaling enhances the stochastic transport of motor-driven cargo in neurons. Physical biology. 7 [PubMed]

Newby JM, Bressloff PC. (2010). Quasi-steady state reduction of molecular motor-based models of directed intermittent search. Bulletin of mathematical biology. 72 [PubMed]

Nguyen PV, Abel T, Kandel ER. (1994). Requirement of a critical period of transcription for induction of a late phase of LTP. Science (New York, N.Y.). 265 [PubMed]

Okuno H et al. (2012). Inverse synaptic tagging of inactive synapses via dynamic interaction of Arc/Arg3.1 with CaMKIIß. Cell. 149 [PubMed]

Park M, Penick EC, Edwards JG, Kauer JA, Ehlers MD. (2004). Recycling endosomes supply AMPA receptors for LTP. Science (New York, N.Y.). 305 [PubMed]

Park M et al. (2006). Plasticity-induced growth of dendritic spines by exocytic trafficking from recycling endosomes. Neuron. 52 [PubMed]

Redondo RL, Morris RG. (2011). Making memories last: the synaptic tagging and capture hypothesis. Nature reviews. Neuroscience. 12 [PubMed]

Rogers SL, Gelfand VI. (1998). Myosin cooperates with microtubule motors during organelle transport in melanophores. Current biology : CB. 8 [PubMed]

Roy S, Yang G, Tang Y, Scott DA. (2011). A simple photoactivation and image analysis module for visualizing and analyzing axonal transport with high temporal resolution. Nature protocols. 7 [PubMed]

Smith DA, Simmons RM. (2001). Models of motor-assisted transport of intracellular particles. Biophysical journal. 80 [PubMed]

Soundararajan HC, Bullock SL. (2014). The influence of dynein processivity control, MAPs, and microtubule ends on directional movement of a localising mRNA. eLife. 3 [PubMed]

Spiegel I et al. (2014). Npas4 regulates excitatory-inhibitory balance within neural circuits through cell-type-specific gene programs. Cell. 157 [PubMed]

Steward O, Farris S, Pirbhoy PS, Darnell J, Driesche SJ. (2014). Localization and local translation of Arc/Arg3.1 mRNA at synapses: some observations and paradoxes. Frontiers in molecular neuroscience. 7 [PubMed]

Steward O, Wallace CS, Lyford GL, Worley PF. (1998). Synaptic activation causes the mRNA for the IEG Arc to localize selectively near activated postsynaptic sites on dendrites. Neuron. 21 [PubMed]

Steward O, Worley PF. (2001). Selective targeting of newly synthesized Arc mRNA to active synapses requires NMDA receptor activation. Neuron. 30 [PubMed]

Sutton MA, Schuman EM. (2006). Dendritic protein synthesis, synaptic plasticity, and memory. Cell. 127 [PubMed]

Vickers CA, Dickson KS, Wyllie DJ. (2005). Induction and maintenance of late-phase long-term potentiation in isolated dendrites of rat hippocampal CA1 pyramidal neurones. The Journal of physiology. 568 [PubMed]

Voit EO, Martens HA, Omholt SW. (2015). 150 years of the mass action law. PLoS computational biology. 11 [PubMed]

Wang X, Schwarz TL. (2009). The mechanism of Ca2+ -dependent regulation of kinesin-mediated mitochondrial motility. Cell. 136 [PubMed]

Welte MA. (2004). Bidirectional transport along microtubules. Current biology : CB. 14 [PubMed]

Williams AH. (2016). PyNeuron Toolbox. https://github.com/ahwillia/PyNeuron-Toolbox.

Williams AH. (2016). PyNeuron Toolbox. https://github.com/ahwillia/PyNeuron-Toolbox.

Wu B, Eliscovich C, Yoon YJ, Singer RH. (2016). Translation dynamics of single mRNAs in live cells and neurons. Science (New York, N.Y.). 352 [PubMed]

References and models that cite this paper
This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.