Bianchi D et al. (2014). Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus. 24 [PubMed]

• Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014) [Model]

Bianchi D et al. (2012). On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons. Journal of computational neuroscience. 33 [PubMed]

• CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012) [Model]

Bittner KC et al. (2015). Conjunctive input processing drives feature selectivity in hippocampal CA1 neurons. Nature neuroscience. 18 [PubMed]

Bliss TV, Collingridge GL. (1993). A synaptic model of memory: long-term potentiation in the hippocampus. Nature. 361 [PubMed]

Capocchi G, Zampolini M, Larson J. (1992). Theta burst stimulation is optimal for induction of LTP at both apical and basal dendritic synapses on hippocampal CA1 neurons. Brain research. 591 [PubMed]

Castelli L, Nigro MJ, Magistretti J. (2007). Analysis of resurgent sodium-current expression in rat parahippocampal cortices and hippocampal formation. Brain research. 1163 [PubMed]

Dietzel I, Heinemann U, Hofmeier G, Lux HD. (1980). Transient changes in the size of the extracellular space in the sensorimotor cortex of cats in relation to stimulus-induced changes in potassium concentration. Experimental brain research. 40 [PubMed]

Dietzel I, Heinemann U, Hofmeier G, Lux HD. (1982). Stimulus-induced changes in extracellular Na+ and Cl- concentration in relation to changes in the size of the extracellular space. Experimental brain research. 46 [PubMed]

Druckmann S et al. (2011). Effective stimuli for constructing reliable neuron models. PLoS computational biology. 7 [PubMed]

Ellingsrud AJ, Solbrå A, Einevoll GT, Halnes G, Rognes ME. (2020). Finite Element Simulation of Ionic Electrodiffusion in Cellular Geometries. Frontiers in neuroinformatics. 14 [PubMed]

Enrico P et al. (2016). Morphofunctional alterations in ventral tegmental area dopamine neurons in acute and prolonged opiates withdrawal. A computational perspective. Neuroscience. 322 [PubMed]

• VTA neurons: Morphofunctional alterations in acute opiates withdrawal (Enrico et al. 2016) [Model]

French CR, Sah P, Buckett KJ, Gage PW. (1990). A voltage-dependent persistent sodium current in mammalian hippocampal neurons. The Journal of general physiology. 95 [PubMed]

Halnes G et al. (2016). Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. PLoS computational biology. 12 [PubMed]

• Effect of ionic diffusion on extracellular potentials (Halnes et al 2016) [Model]

Hernandez RV, Navarro MM, Rodriguez WA, Martinez JL, LeBaron RG. (2005). Differences in the magnitude of long-term potentiation produced by theta burst and high frequency stimulation protocols matched in stimulus number. Brain research. Brain research protocols. 15 [PubMed]

Hines ML, Davison AP, Muller E. (2009). NEURON and Python. Frontiers in neuroinformatics. 3 [PubMed]

• NEURON + Python (Hines et al. 2009) [Model]

Hoffman DA, Johnston D. (1999). Neuromodulation of dendritic action potentials. Journal of neurophysiology. 81 [PubMed]

Kager H, Wadman WJ, Somjen GG. (2000). Simulated seizures and spreading depression in a neuron model incorporating interstitial space and ion concentrations. Journal of neurophysiology. 84 [PubMed]

LeBeau FE, Towers SK, Traub RD, Whittington MA, Buhl EH. (2002). Fast network oscillations induced by potassium transients in the rat hippocampus in vitro. The Journal of physiology. 542 [PubMed]

Magee JC. (1999). Dendritic Ih normalizes temporal summation in hippocampal CA1 neurons Nature neuroscience. 2 [PubMed]

Magee JC, Johnston D. (1995). Characterization of single voltage-gated Na+ and Ca2+ channels in apical dendrites of rat CA1 pyramidal neurons. The Journal of physiology. 487 [PubMed]

Majumdar S, Sikdar SK. (2007). Periodicity in Na(+) channel properties alters excitability of a model neuron. Biochemical and biophysical research communications. 359 [PubMed]

Marcelin B et al. (2009). h channel-dependent deficit of theta oscillation resonance and phase shift in temporal lobe epilepsy. Neurobiology of disease. 33 [PubMed]

• CA1 pyramidal neuron: h channel-dependent deficit of theta oscill. resonance (Marcelin et al. 2008) [Model]

Megías M, Emri Z, Freund TF, Gulyás AI. (2001). Total number and distribution of inhibitory and excitatory synapses on hippocampal CA1 pyramidal cells. Neuroscience. 102 [PubMed]

Migliore M et al. (2015). Synaptic clusters function as odor operators in the olfactory bulb. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]

• 3D olfactory bulb: operators (Migliore et al, 2015) [Model]

Migliore M, De Simone G, Migliore R. (2015). Effect of the initial synaptic state on the probability to induce long-term potentiation and depression. Biophysical journal. 108 [PubMed]

• Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015) [Model]

Migliore M, Hoffman DA, Magee JC, Johnston D. (1999). Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. Journal of computational neuroscience. 7 [PubMed]

• CA1 pyramidal neuron (Migliore et al 1999) [Model]

Migliore M, Migliore R. (2012). Know your current I(h): interaction with a shunting current explains the puzzling effects of its pharmacological or pathological modulations. PloS one. 7 [PubMed]

• CA1 pyramidal neuron: Ih current (Migliore et al. 2012) [Model]

Migliore R et al. (2018). The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow. PLoS computational biology. 14 [PubMed]

Müller M, Somjen GG. (2000). Na(+) and K(+) concentrations, extra- and intracellular voltages, and the effect of TTX in hypoxic rat hippocampal slices. Journal of neurophysiology. 83 [PubMed]

Narayanan R, Johnston D. (2007). Long-term potentiation in rat hippocampal neurons is accompanied by spatially widespread changes in intrinsic oscillatory dynamics and excitability. Neuron. 56 [PubMed]

• Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]
• Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007) [Model]

Narayanan R, Johnston D. (2008). The h channel mediates location dependence and plasticity of intrinsic phase response in rat hippocampal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]

Nygren A, Halter JA. (1999). A general approach to modeling conduction and concentration dynamics in excitable cells of concentric cylindrical geometry. Journal of theoretical biology. 199 [PubMed]

Pumain R, Heinemann U. (1985). Stimulus- and amino acid-induced calcium and potassium changes in rat neocortex. Journal of neurophysiology. 53 [PubMed]

Somjen GG. (2001). Mechanisms of spreading depression and hypoxic spreading depression-like depolarization. Physiological reviews. 81 [PubMed]

Sætra MJ, Einevoll GT, Halnes G. (2020). An electrodiffusive, ion conserving Pinsky-Rinzel model with homeostatic mechanisms. PLoS computational biology. 16 [PubMed]

Uebachs M et al. (2010). Efficacy loss of the anticonvulsant carbamazepine in mice lacking sodium channel beta subunits via paradoxical effects on persistent sodium currents. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• CA1 pyramidal neuron to study INaP properties and repetitive firing (Uebachs et al. 2010) [Model]

Wilent WB, Contreras D. (2005). Stimulus-dependent changes in spike threshold enhance feature selectivity in rat barrel cortex neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]